Rh2AG098900

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012223
Physical Location & Seq
Forward (+)
8372945 .. 8376191
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG098900.1

Sequence Viewer

Length: 1095 bp
ATGGTACCTGTCTATGCTACTGACTCGATGATATCCTTGTTGAATCCGAAGTTGTCTCTAGCATGTGACATTCTAAGAAGCTGTTATGAAGCGTTTGCCTTGTATTCTTTTGGAAGCTACTTGGTTGCTTGTCTGGGAGGTGAGAGAAGAGTAGTAGAATTACTTGAAAATCAATCTGGAAAGATCCTAAACAAAGCATTGGTAGAAGGGGAAGATGAGAATTGCAGGAAACCACACTGGTCTCTTCGCAACTTCTTCAGGCGACCAACTATTATTGGGAAAAATTTGCTCACTATAGTGAAATTCGGTCTTGTACAATATATGATTCTGAAGACAGTTTGTGCATTCCTAGCACTCGTGTTGGAAATCTTTGGCGTCTATGGTGATGGGGAATTCAAGTTTCACTACGGGTATCCATACATTACGATGGTACTGAATTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGCAATTCTATAATGTGACTCATGAAAGACTTCAACCAATAAGGCCGCTTGCAAAGTTCATCAGCTTTAAGGCTATTGTGTTTGCGACTTGGTGGCAAGGTGTAGGTATTGCGCTGTTGTGTTATTTTGGTGTTCTTCCCAACCAGGAAAAACTACAAACAGGGTTGCAGGATTTCTTGATTTGTATAGAAATGGCAATTGCAGCTGTTGCACATGTGTTTGTCTTTTCGGCAGAACCTTACCATTACATTCCATCTTCTTCTGGGTATGAGAAGATCACCACCACTGAAACAACCAGTGAGGAAGCAGTGAAGTTGGAGGAAGGTGACAGTAGTACACAAGCTGTGGTTGAAACAAAAGAAACTCAGGTCGAGGCTCCCGGAACAAGTGTGACTGAGAGTGTTCAGGACATAGTGTTTGAAGGTGGTCATCATGTTGTCAAGGATGTTGTGTTGACCATAAATCAAGCAATAGGGCCTGTGGAGAAGGGTGTGACGAAGGGTGTGACAAAGATACAAGAAACCTTCCACCAAAGATCAGATGAGCATGACGATAAGTCGAAGGTTTCAGTTGAGGAGAGTATTGAAGTGACTCTTTCCGATGAAGAAACACATTTGGACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

364

Amino Acids

40.9

Weight (kDa)

5.22

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 1 - 237 2.4e-78 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 515
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 4 cut(s) 283, 302, 392, 436
AcuI CTGAAG 2 cut(s) 241, 350
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 4 cut(s) 6, 315, 432, 805
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 7 cut(s) 43, 167, 397, 503, 821, 890, 1055
AhdI GACNNNNNGTC 1 cut(s) 1024
AjnI CCWGG 1 cut(s) 612
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 5 cut(s) 81, 117, 534, 674, 812
AluI AGCT 5 cut(s) 81, 117, 534, 674, 812
Alw26I GTCTC 2 cut(s) 60, 246
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 512, 944
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 4 cut(s) 283, 302, 392, 436
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
Asp700I GAANNNNTTC 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 944, 1087
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 4 cut(s) 152, 395, 739, 806
AvaII GGWCC 1 cut(s) 1087
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 683
BccI CCATC 3 cut(s) 380, 421, 730
BciT130I CCWGG 1 cut(s) 614
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 2 cut(s) 60, 246
BfaI CTAG 2 cut(s) 59, 350
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 2 cut(s) 515, 672
BlsI GCNGC 2 cut(s) 516, 673
Bme1390I CCNGG 2 cut(s) 614, 849
Bme18I GGWCC 1 cut(s) 1087
BmeRI GACNNNNNGTC 1 cut(s) 1024
BmgT120I GGNCC 2 cut(s) 944, 1087
BmiI GGNNCC 2 cut(s) 6, 846
BmrFI CCNGG 2 cut(s) 614, 849
BpiI GAAGAC 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 242, 765
BseBI CCWGG 1 cut(s) 614
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 848, 855
BseNI ACTGG 2 cut(s) 242, 765
BseRI GAGGAG 1 cut(s) 1058
BseXI GCAGC 1 cut(s) 683
BshFI GGCC 2 cut(s) 514, 946
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 849
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 2 cut(s) 60, 246
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 514, 946
Bso31I GGTCTC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 3 cut(s) 183, 744, 1004
BspACI CCGC 1 cut(s) 515
BspANI GGCC 2 cut(s) 514, 946
BspCNI CTCAG 2 cut(s) 847, 856
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 6, 846
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 2 cut(s) 242, 765
BssMI GATC 3 cut(s) 183, 744, 1004
BssNI GRCGYC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 337, 800, 1091
Bst6I CTCTTC 2 cut(s) 142, 249
BstACI GRCGYC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 74, 834, 864
BstF5I GGATG 1 cut(s) 919
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 3 cut(s) 186, 747, 1007
BstMAI GTCTC 2 cut(s) 60, 246
BstMBI GATC 3 cut(s) 183, 744, 1004
BstMWI GCNNNNNNNGC 3 cut(s) 350, 671, 677
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 2 cut(s) 66, 686
BstSCI CCNGG 2 cut(s) 612, 847
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 683
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 514, 946
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 4 cut(s) 235, 753, 772, 783
Cac8I GCNNGC 1 cut(s) 519
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 944, 1087
CseI GACGC 1 cut(s) 364
Csp6I GTAC 4 cut(s) 5, 314, 431, 804
CviAII CATG 5 cut(s) 63, 491, 683, 902, 1016
CviQI GTAC 4 cut(s) 5, 314, 431, 804
DdeI CTNAG 3 cut(s) 74, 834, 864
DpnI GATC 3 cut(s) 185, 746, 1006
DpnII GATC 3 cut(s) 183, 744, 1004
DriI GACNNNNNGTC 1 cut(s) 1024
Eam1104I CTCTTC 2 cut(s) 142, 249
Eam1105I GACNNNNNGTC 1 cut(s) 1024
EarI CTCTTC 2 cut(s) 142, 249
Eco31I GGTCTC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 1087
Eco57I CTGAAG 2 cut(s) 241, 350
EcoO109I RGGNCCY 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 612
EcoRV GATATC 1 cut(s) 33
FaeI CATG 5 cut(s) 66, 494, 686, 905, 1019
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FatI CATG 5 cut(s) 62, 490, 682, 901, 1015
Fnu4HI GCNGC 2 cut(s) 515, 672
FokI GGATG 1 cut(s) 926
Fsp4HI GCNGC 2 cut(s) 515, 672
FspBI CTAG 2 cut(s) 59, 350
GlaI GCGC 1 cut(s) 582
GluI GCNGC 2 cut(s) 515, 672
HaeIII GGCC 2 cut(s) 514, 946
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 583
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 66, 494, 686, 905, 1019
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HinfI GANTC 5 cut(s) 23, 43, 325, 487, 1060
HpaII CCGG 1 cut(s) 849
HphI GGTGA 4 cut(s) 152, 395, 739, 806
Hpy166II GTNNAC 2 cut(s) 806, 924
Hpy188I TCNGA 4 cut(s) 48, 330, 1009, 1069
Hpy188III TCNNGA 4 cut(s) 177, 491, 646, 875
Hpy8I GTNNAC 2 cut(s) 806, 924
HpyAV CCTTC 7 cut(s) 200, 785, 884, 949, 961, 1003, 1024
HpyCH4III ACNGT 3 cut(s) 337, 800, 1091
HpyCH4V TGCA 7 cut(s) 225, 344, 472, 521, 637, 671, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 671, 677
HpyF3I CTNAG 3 cut(s) 74, 834, 864
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 66, 494, 686, 905, 1019
HspAI GCGC 1 cut(s) 581
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 183, 744, 1004
LmnI GCTCC 1 cut(s) 850
Lsp1109I GCAGC 1 cut(s) 683
MaeI CTAG 2 cut(s) 59, 350
MaeIII GTNAC 7 cut(s) 65, 484, 794, 859, 961, 973, 1057
MalI GATC 3 cut(s) 185, 746, 1006
MboI GATC 3 cut(s) 183, 744, 1004
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 183
MluCI AATT 8 cut(s) 158, 220, 283, 302, 392, 436, 473, 666
MlyI GAGTC 3 cut(s) 17, 481, 1054
MmeI TCCRAC 2 cut(s) 342, 765
MnlI CCTC 5 cut(s) 131, 763, 781, 835, 1036
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 2 cut(s) 537, 1093
MslI CAYNNNNRTG 2 cut(s) 296, 425
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 849
MspR9I CCNGG 2 cut(s) 614, 849
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 350, 671, 677
NciI CCSGG 1 cut(s) 849
NdeII GATC 3 cut(s) 183, 744, 1004
NlaIII CATG 5 cut(s) 66, 494, 686, 905, 1019
NlaIV GGNNCC 2 cut(s) 6, 846
NmuCI GTSAC 7 cut(s) 65, 484, 794, 859, 961, 973, 1057
NspI RCATGY 2 cut(s) 66, 686
OliI CACNNNNGTG 1 cut(s) 296
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 682
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 43, 325
PfoI TCCNGGA 1 cut(s) 847
PkrI GCNGC 2 cut(s) 516, 673
PleI GAGTC 3 cut(s) 17, 481, 1054
PpsI GAGTC 3 cut(s) 17, 481, 1054
PscI ACATGT 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 6, 846
PspPI GGNCC 2 cut(s) 944, 1087
PsuI RGATCY 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 4 cut(s) 6, 315, 432, 805
RsaNI GTAC 4 cut(s) 5, 314, 431, 804
RseI CAYNNNNRTG 2 cut(s) 296, 425
SaqAI TTAA 2 cut(s) 537, 1093
SatI GCNGC 2 cut(s) 515, 672
Sau3AI GATC 3 cut(s) 183, 744, 1004
Sau96I GGNCC 2 cut(s) 944, 1087
SchI GAGTC 3 cut(s) 17, 481, 1054
ScrFI CCNGG 2 cut(s) 614, 849
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 1087
SmiMI CAYNNNNRTG 2 cut(s) 296, 425
Sse9I AATT 8 cut(s) 158, 220, 283, 302, 392, 436, 473, 666
SsiI CCGC 1 cut(s) 515
SspMI CTAG 2 cut(s) 59, 350
StyD4I CCNGG 2 cut(s) 612, 847
TaaI ACNGT 3 cut(s) 337, 800, 1091
TaqI TCGA 3 cut(s) 26, 840, 1028
TaqII GACCGA 1 cut(s) 296
TasI AATT 8 cut(s) 158, 220, 283, 302, 392, 436, 473, 666
TatI WGTACW 2 cut(s) 313, 803
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 2 cut(s) 43, 325
Tru1I TTAA 2 cut(s) 537, 1093
Tru9I TTAA 2 cut(s) 537, 1093
TscAI CASTG 4 cut(s) 242, 760, 772, 783
TseFI GTSAC 7 cut(s) 65, 484, 794, 859, 961, 973, 1057
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 7 cut(s) 65, 484, 794, 859, 961, 973, 1057
TspDTI ATGAA 4 cut(s) 102, 507, 517, 1086
TspRI CASTG 4 cut(s) 242, 760, 772, 783
VpaK11BI GGWCC 1 cut(s) 1087
XapI RAATTY 4 cut(s) 283, 302, 392, 436
XceI RCATGY 2 cut(s) 66, 686
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 59, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.