RchiOBHm_Chr2g0095421

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012223
Physical Location & Seq
Forward (+)
8354216 .. 8356581
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47040

Sequence Viewer

Length: 1329 bp
ATGGCATCGTCTTCTTCACATACTTCAGTCCATGAAAACATATATGCAGATCTCTACAAACCAGCCGTGATAACTGCAGCTTCCTTTACAGTTGTGGCACTCATTCTCTCCCTTTTTCTCATCCTTCGGCATCTCAGATCATACAACAAGCCTTCAGTCAGTTCCTTTTCCACTCAGAATTGTGAACAAATATGGGTGGTTGCTGTTGTTTTCATGGTACCTGTCTATGCTACTGACTCGATGATATCCTTGTTGAATCCGAAGTTGTCTCTAGCATGTGACATTCTAAGAAGCTGTTATGAAGCGTTTGCCTTGTATTCTTTTGGAAGCTACTTGGTTGCTTGTCTGGAGCTTGCATTATTCATGAATGGCTATTACACAGGAGGTGAGAGAAGAGTAGTAGAATTACTTGAAAATCAATCTGGAAAGATCCTAAACAAAGCATTGGTAGAAGGGGAAGATGAGAATTGCAGGAAACCACACTGGTCTCTTCGCAACTTCTTCAGGCGACCAACTATTATTGGGAAAAATTTGCTCATTATAGTGAAATTCGGTCTTGTACAATATATGATTCTGAAGACAGTTTGTGCATTCCTAGCACTCGTGTTGGAAATCTTTGGCGTCTATGGTGATGGGGAATTCAAGTTTCAGTACGGGTATCCATACATCACGATAGTACTGAATTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGCAATTCTATAATGTGACTCATGAAAGACTTCAACCAATAAGGCCGCTTGCAAAGTTCATCAGCTTTAAGGCTATTGTGTTTGCGACTTGGTGGCAAGGTGTAGGTATTGCGCTGTTGTGTTATTTTGGTGTTCTTCCAAACCAGGAAAAACTACAAACAGGGTTGCAGGATTTCTTGATTTGTATAGAAATGGCAATTGCAGCTGTTGCACATGTGTTTGTCTTTTCGGCAGAACCTTACCATTACATTCCATCTTCTTCTGGGTATGAGAAGATCACCACCACTGAAACAACCAGTGAGGAAGCAGTGAAGTTGGAGGAAGGTGACAGTAGCACACAAGCTGTGGTTGAAACAAAAGAAACTCAGGTCGAGGCTCCCGGAACAAGTGTGACTGAGAGTGTTCAGGACATAGTGTTTGAAGGTGGTCATCATGTTGTCAAGGATGTTGTGTTGACCATAAATCAAGCAATAGGGCCTGTGGAGAAGGGTGTGACAAAGATACAAGAAACCTTCCACCAAAGATCAGATGAGCATGACGATAAGTCGAAGGTTTCAGTTGAGGAGAGTATTGAAGTGACTCTTTCCGATGAAGAAACACATTTGGACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

442

Amino Acids

49.64

Weight (kDa)

5.3

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 23 - 319 2.2e-83 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 217
AciI CCGC 1 cut(s) 761
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 4 cut(s) 529, 548, 638, 682
AcuI CTGAAG 4 cut(s) 9, 138, 487, 596
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 4 cut(s) 219, 561, 653, 678
AfiI CCNNNNNNNGG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 7 cut(s) 256, 413, 643, 749, 1067, 1136, 1289
AhdI GACNNNNNGTC 1 cut(s) 1258
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 7 cut(s) 80, 294, 330, 352, 780, 920, 1058
AluI AGCT 7 cut(s) 80, 294, 330, 352, 780, 920, 1058
Alw26I GTCTC 2 cut(s) 273, 492
AlwI GGATC 1 cut(s) 424
AoxI GGCC 2 cut(s) 758, 1190
ApeKI GCWGC 2 cut(s) 77, 917
ApoI RAATTY 4 cut(s) 529, 548, 638, 682
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
Asp700I GAANNNNTTC 1 cut(s) 744
Asp718I GGTACC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 2 cut(s) 1190, 1321
AsuC2I CCSGG 1 cut(s) 1095
AsuHPI GGTGA 4 cut(s) 398, 641, 985, 1052
AvaII GGWCC 1 cut(s) 1321
BanI GGYRCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 2 cut(s) 3, 584
BbvI GCAGC 2 cut(s) 89, 929
BccI CCATC 2 cut(s) 626, 976
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 860
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 1 cut(s) 1095
BcoDI GTCTC 2 cut(s) 273, 492
BfaI CTAG 2 cut(s) 272, 596
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 78, 761, 918
BlsI GCNGC 3 cut(s) 79, 762, 919
BmcAI AGTACT 1 cut(s) 678
Bme1390I CCNGG 2 cut(s) 860, 1095
Bme18I GGWCC 1 cut(s) 1321
BmeRI GACNNNNNGTC 1 cut(s) 1258
BmgT120I GGNCC 2 cut(s) 1190, 1321
BmiI GGNNCC 2 cut(s) 219, 1092
BmrFI CCNGG 2 cut(s) 860, 1095
BmsI GCATC 2 cut(s) 14, 139
BpiI GAAGAC 2 cut(s) 3, 584
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 1095
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 488, 1011
BseBI CCWGG 1 cut(s) 860
BseGI GGATG 2 cut(s) 120, 1165
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMII CTCAG 4 cut(s) 148, 188, 1094, 1101
BseNI ACTGG 2 cut(s) 488, 1011
BseRI GAGGAG 1 cut(s) 1292
BseXI GCAGC 2 cut(s) 89, 929
BshFI GGCC 2 cut(s) 760, 1192
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 1095
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 2 cut(s) 273, 492
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 760, 1192
Bso31I GGTCTC 1 cut(s) 492
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 5 cut(s) 49, 137, 429, 990, 1238
BspACI CCGC 1 cut(s) 761
BspANI GGCC 2 cut(s) 760, 1192
BspCNI CTCAG 4 cut(s) 147, 187, 1093, 1102
BspHI TCATGA 2 cut(s) 363, 736
BspLI GGNNCC 2 cut(s) 219, 1092
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 2 cut(s) 488, 1011
BssMI GATC 5 cut(s) 49, 137, 429, 990, 1238
BssNI GRCGYC 1 cut(s) 621
BssSI CACGAG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 4 cut(s) 91, 583, 1046, 1325
Bst6I CTCTTC 2 cut(s) 388, 495
BstACI GRCGYC 1 cut(s) 621
BstAPI GCANNNNNTGC 1 cut(s) 923
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 354, 765
BstDEI CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
BstF5I GGATG 2 cut(s) 120, 1165
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 5 cut(s) 52, 140, 432, 993, 1241
BstMAI GTCTC 2 cut(s) 273, 492
BstMBI GATC 5 cut(s) 49, 137, 429, 990, 1238
BstMWI GCNNNNNNNGC 3 cut(s) 596, 917, 923
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 2 cut(s) 279, 932
BstSCI CCNGG 2 cut(s) 858, 1093
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 89, 929
BstV2I GAAGAC 2 cut(s) 3, 584
BstX2I RGATCY 2 cut(s) 49, 429
BstYI RGATCY 2 cut(s) 49, 429
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 760, 1192
BtsCI GGATG 2 cut(s) 120, 1165
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 4 cut(s) 481, 999, 1018, 1029
Cac8I GCNNGC 2 cut(s) 354, 765
CciI TCATGA 2 cut(s) 363, 736
CfoI GCGC 1 cut(s) 829
Cfr13I GGNCC 2 cut(s) 1190, 1321
CseI GACGC 1 cut(s) 610
Csp6I GTAC 4 cut(s) 218, 560, 652, 677
CviAII CATG 8 cut(s) 32, 214, 276, 364, 737, 929, 1148, 1250
CviQI GTAC 4 cut(s) 218, 560, 652, 677
DdeI CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
DpnI GATC 5 cut(s) 51, 139, 431, 992, 1240
DpnII GATC 5 cut(s) 49, 137, 429, 990, 1238
DriI GACNNNNNGTC 1 cut(s) 1258
Eam1104I CTCTTC 2 cut(s) 388, 495
Eam1105I GACNNNNNGTC 1 cut(s) 1258
EarI CTCTTC 2 cut(s) 388, 495
Eco31I GGTCTC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 1321
Eco57I CTGAAG 4 cut(s) 9, 138, 487, 596
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 1 cut(s) 246
FaeI CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
FalI AAGNNNNNCTT 2 cut(s) 1281, 1313
FatI CATG 8 cut(s) 31, 213, 275, 363, 736, 928, 1147, 1249
Fnu4HI GCNGC 3 cut(s) 78, 761, 918
FokI GGATG 2 cut(s) 107, 1172
Fsp4HI GCNGC 3 cut(s) 78, 761, 918
FspBI CTAG 2 cut(s) 272, 596
GlaI GCGC 1 cut(s) 828
GluI GCNGC 3 cut(s) 78, 761, 918
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 760, 1192
HapII CCGG 1 cut(s) 1095
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 829
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HinfI GANTC 5 cut(s) 236, 256, 571, 733, 1294
HpaII CCGG 1 cut(s) 1095
HphI GGTGA 4 cut(s) 398, 641, 985, 1052
Hpy166II GTNNAC 2 cut(s) 185, 1170
Hpy188I TCNGA 6 cut(s) 137, 177, 261, 576, 1243, 1303
Hpy188III TCNNGA 7 cut(s) 347, 364, 423, 670, 737, 892, 1121
Hpy8I GTNNAC 2 cut(s) 185, 1170
HpyAV CCTTC 8 cut(s) 134, 162, 446, 1031, 1130, 1195, 1237, 1258
HpyCH4III ACNGT 4 cut(s) 91, 583, 1046, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 917, 923
HpyF3I CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
HspAI GCGC 1 cut(s) 827
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 5 cut(s) 49, 137, 429, 990, 1238
LmnI GCTCC 2 cut(s) 349, 1096
Lsp1109I GCAGC 2 cut(s) 89, 929
LweI GCATC 2 cut(s) 14, 139
MaeI CTAG 2 cut(s) 272, 596
MaeIII GTNAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
MalI GATC 5 cut(s) 51, 139, 431, 992, 1240
MboI GATC 5 cut(s) 49, 137, 429, 990, 1238
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 49, 429
MluCI AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
MlyI GAGTC 3 cut(s) 230, 727, 1288
MmeI TCCRAC 2 cut(s) 588, 1011
MnlI CCTC 5 cut(s) 377, 1009, 1027, 1081, 1270
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 2 cut(s) 783, 1327
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 1095
MspR9I CCNGG 2 cut(s) 860, 1095
MunI CAATTG 1 cut(s) 912
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 3 cut(s) 596, 917, 923
NciI CCSGG 1 cut(s) 1095
NdeII GATC 5 cut(s) 49, 137, 429, 990, 1238
NlaIII CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
NlaIV GGNNCC 2 cut(s) 219, 1092
NmuCI GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
NspI RCATGY 2 cut(s) 279, 932
PagI TCATGA 2 cut(s) 363, 736
PciI ACATGT 1 cut(s) 928
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 2 cut(s) 256, 571
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 3 cut(s) 79, 762, 919
PleI GAGTC 3 cut(s) 230, 727, 1288
PpsI GAGTC 3 cut(s) 230, 727, 1288
PscI ACATGT 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 858
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 219, 1092
PspPI GGNCC 2 cut(s) 1190, 1321
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 49, 429
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 4 cut(s) 219, 561, 653, 678
RsaNI GTAC 4 cut(s) 218, 560, 652, 677
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 783, 1327
SatI GCNGC 3 cut(s) 78, 761, 918
Sau3AI GATC 5 cut(s) 49, 137, 429, 990, 1238
Sau96I GGNCC 2 cut(s) 1190, 1321
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 3 cut(s) 230, 727, 1288
ScrFI CCNGG 2 cut(s) 860, 1095
SfaNI GCATC 2 cut(s) 14, 139
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 1321
SmiMI CAYNNNNRTG 1 cut(s) 542
Sse9I AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
SsiI CCGC 1 cut(s) 761
SspMI CTAG 2 cut(s) 272, 596
StyD4I CCNGG 2 cut(s) 858, 1093
TaaI ACNGT 4 cut(s) 91, 583, 1046, 1325
TaqI TCGA 3 cut(s) 239, 1086, 1262
TaqII GACCGA 1 cut(s) 542
TasI AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
TatI WGTACW 2 cut(s) 559, 676
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 2 cut(s) 256, 571
Tru1I TTAA 2 cut(s) 783, 1327
Tru9I TTAA 2 cut(s) 783, 1327
TscAI CASTG 4 cut(s) 488, 1006, 1018, 1029
TseFI GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
TseI GCWGC 2 cut(s) 77, 917
Tsp45I GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
TspDTI ATGAA 8 cut(s) 48, 202, 315, 352, 380, 753, 763, 1320
TspRI CASTG 4 cut(s) 488, 1006, 1018, 1029
VpaK11BI GGWCC 1 cut(s) 1321
XapI RAATTY 4 cut(s) 529, 548, 638, 682
XceI RCATGY 2 cut(s) 279, 932
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 272, 596
ZrmI AGTACT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.