Rmu_sc0010847.1_g000005

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010847.1
OG0012223
Physical Location & Seq
Reverse (-)
19326 .. 22758
3433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010847.1_g000005.1.cds

Sequence Viewer

Length: 1029 bp
atgggcaataaattcagactccggaatctagtcattagtcaggtcgtcggattcgggattccgatgaacggtcgccagatttcggtcaccggtcaccggaatctgcggctggccactggtcacccgagtccgatattagagcttgcattattcatgaatggctattacgcaggaggtgagagaagagtagtagaattacttgaaaatcaatctggaaagatcctaaacaaagcattggtagaaggggaagatgagaattgcaggaaaccacactggtctcttcgcaacttcttcaggcgaccaactattattgggaaaaatttgctcactatagtgaaattcggtcttgtacaatatatgattctgaagacagtttgtgcattcctagcactcgtgttggaaatctttggcgtctatggtgatggggaattcaagtttcactacgggtatccatacatcacgatagtactgaatttcagccagatgtgggcattgtattgccttgtgcaattctataatgtgactcatgaaagacttcaaccaataaggccgcttgcaaagttcatcagctttaaggctattgtgtttgcgacttggtggcaaggtatggcaattgcagctgttgcacatgtgtttgtcttttcggcagaaccttaccattacattccatcttcttctgggtatgagaaaatcaccaccactgaaacaaccagtgaggaagcagtgaagttggaggaaggtgacagtagtacacaagctgtggttgaaacaaaagaaactcaggtcgaggctcccggaacaagtgtgactgagagtgttcaggacatagtgtttgaaggtggtcatcatgttgtcaaggatgttgtgttgaccataaatcaagcaatagggcctgtggagaagggtgtgacaaagatacaagaaaccttccaccaaagatcagatgagcatgacgataagtcgaaggtttcagttgaggagagtattgaagtgactctttccgatgaagaaacacatttggaccgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

342

Amino Acids

38.55

Weight (kDa)

5.97

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 106, 551
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 5 cut(s) 11, 319, 338, 428, 472
AcuI CTGAAG 2 cut(s) 277, 386
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 3 cut(s) 351, 468, 751
AfiI CCNNNNNNNGG 4 cut(s) 68, 82, 96, 487
AflIII ACRYGT 1 cut(s) 628
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 6 cut(s) 203, 433, 539, 767, 836, 989
AhdI GACNNNNNGTC 1 cut(s) 958
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 4 cut(s) 142, 570, 620, 758
AluI AGCT 4 cut(s) 142, 570, 620, 758
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 3 cut(s) 111, 548, 890
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 5 cut(s) 11, 319, 338, 428, 472
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
AsiGI ACCGGT 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 890, 1021
AsuC2I CCSGG 1 cut(s) 795
AsuHPI GGTGA 7 cut(s) 79, 86, 113, 188, 431, 685, 752
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 1021
BalI TGGCCA 1 cut(s) 113
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 629
BccI CCATC 2 cut(s) 416, 676
BciVI GTATCC 1 cut(s) 459
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 29, 386
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 459
BisI GCNGC 3 cut(s) 107, 551, 618
BlsI GCNGC 3 cut(s) 108, 552, 619
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 795
Bme18I GGWCC 1 cut(s) 1021
BmeRI GACNNNNNGTC 1 cut(s) 958
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 890, 1021
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 795
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 282
BsaWI WCCGGW 3 cut(s) 21, 89, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 82, 96, 487
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 121, 278, 711
BseAI TCCGGA 1 cut(s) 21
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 4 cut(s) 68, 82, 96, 487
BseMII CTCAG 2 cut(s) 794, 801
BseNI ACTGG 3 cut(s) 121, 278, 711
BseRI GAGGAG 1 cut(s) 992
BseXI GCAGC 1 cut(s) 629
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 113, 550, 892
BshTI ACCGGT 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 22, 90, 97, 795
BslI CCNNNNNNNGG 4 cut(s) 68, 82, 96, 487
BsmAI GTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 113, 550, 892
Bso31I GGTCTC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 124
Bsp13I TCCGGA 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 219, 938
BspACI CCGC 2 cut(s) 106, 551
BspANI GGCC 3 cut(s) 113, 550, 892
BspCNI CTCAG 2 cut(s) 793, 802
BspEI TCCGGA 1 cut(s) 21
BspHI TCATGA 2 cut(s) 153, 526
BspLI GGNNCC 1 cut(s) 792
BspPI GGATC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 3 cut(s) 121, 278, 711
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 219, 938
BssNI GRCGYC 1 cut(s) 411
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 4 cut(s) 71, 373, 746, 1025
Bst6I CTCTTC 2 cut(s) 178, 285
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 3 cut(s) 111, 144, 555
BstDEI CTNAG 2 cut(s) 780, 810
BstEII GGTNACC 3 cut(s) 85, 92, 119
BstF5I GGATG 1 cut(s) 865
BstKTI GATC 2 cut(s) 222, 941
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 2 cut(s) 219, 938
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 386, 617, 623
BstNSI RCATGY 1 cut(s) 632
BstPI GGTNACC 3 cut(s) 85, 92, 119
BstSCI CCNGG 1 cut(s) 793
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 3 cut(s) 113, 550, 892
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 5 cut(s) 114, 271, 699, 718, 729
Cac8I GCNNGC 3 cut(s) 111, 144, 555
CciI TCATGA 2 cut(s) 153, 526
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 890, 1021
CseI GACGC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 350, 467, 750
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 5 cut(s) 154, 527, 629, 848, 950
CviQI GTAC 3 cut(s) 350, 467, 750
DdeI CTNAG 2 cut(s) 780, 810
DpnI GATC 2 cut(s) 221, 940
DpnII GATC 2 cut(s) 219, 938
DriI GACNNNNNGTC 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 2 cut(s) 178, 285
Eam1105I GACNNNNNGTC 1 cut(s) 958
EarI CTCTTC 2 cut(s) 178, 285
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 1021
Eco57I CTGAAG 2 cut(s) 277, 386
Eco88I CYCGRG 1 cut(s) 124
Eco91I GGTNACC 3 cut(s) 85, 92, 119
EcoO109I RGGNCCY 1 cut(s) 890
EcoO65I GGTNACC 3 cut(s) 85, 92, 119
EcoRI GAATTC 1 cut(s) 428
FaeI CATG 5 cut(s) 157, 530, 632, 851, 953
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FatI CATG 5 cut(s) 153, 526, 628, 847, 949
Fnu4HI GCNGC 3 cut(s) 107, 551, 618
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 3 cut(s) 107, 551, 618
FspBI CTAG 2 cut(s) 29, 386
GluI GCNGC 3 cut(s) 107, 551, 618
HaeIII GGCC 3 cut(s) 113, 550, 892
HapII CCGG 4 cut(s) 22, 90, 97, 795
HgaI GACGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 5 cut(s) 157, 530, 632, 851, 953
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HinfI GANTC 9 cut(s) 18, 25, 51, 58, 100, 127, 361, 523, 994
HpaII CCGG 4 cut(s) 22, 90, 97, 795
HphI GGTGA 7 cut(s) 79, 86, 113, 188, 431, 685, 752
Hpy166II GTNNAC 2 cut(s) 752, 870
Hpy188I TCNGA 7 cut(s) 17, 50, 63, 132, 366, 943, 1003
Hpy188III TCNNGA 7 cut(s) 22, 55, 154, 213, 460, 527, 821
Hpy8I GTNNAC 2 cut(s) 752, 870
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 6 cut(s) 236, 731, 830, 895, 937, 958
HpyCH4III ACNGT 4 cut(s) 71, 373, 746, 1025
HpyCH4V TGCA 7 cut(s) 146, 261, 380, 508, 557, 617, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 617, 623
HpyF3I CTNAG 2 cut(s) 780, 810
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 5 cut(s) 157, 530, 632, 851, 953
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 219, 938
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 1 cut(s) 629
MaeI CTAG 2 cut(s) 29, 386
MaeIII GTNAC 8 cut(s) 85, 92, 119, 520, 740, 805, 907, 991
MalI GATC 2 cut(s) 221, 940
MboI GATC 2 cut(s) 219, 938
MboII GAAGA 8 cut(s) 195, 260, 272, 283, 379, 663, 666, 1019
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 9 cut(s) 11, 194, 256, 319, 338, 428, 472, 509, 612
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 4 cut(s) 12, 136, 517, 988
MmeI TCCRAC 3 cut(s) 28, 378, 711
MnlI CCTC 5 cut(s) 167, 709, 727, 781, 970
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 534
MscI TGGCCA 1 cut(s) 113
MseI TTAA 2 cut(s) 573, 1027
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 4 cut(s) 22, 90, 97, 795
MspR9I CCNGG 1 cut(s) 795
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 386, 617, 623
NciI CCSGG 1 cut(s) 795
NdeII GATC 2 cut(s) 219, 938
NlaIII CATG 5 cut(s) 157, 530, 632, 851, 953
NlaIV GGNNCC 1 cut(s) 792
NmuCI GTSAC 8 cut(s) 85, 92, 119, 520, 740, 805, 907, 991
NspI RCATGY 1 cut(s) 632
OliI CACNNNNGTG 1 cut(s) 332
PagI TCATGA 2 cut(s) 153, 526
PciI ACATGT 1 cut(s) 628
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 5 cut(s) 25, 51, 58, 100, 361
PfoI TCCNGGA 1 cut(s) 793
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 3 cut(s) 108, 552, 619
PleI GAGTC 4 cut(s) 12, 135, 517, 988
PpsI GAGTC 4 cut(s) 12, 135, 517, 988
PscI ACATGT 1 cut(s) 628
PspEI GGTNACC 3 cut(s) 85, 92, 119
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 2 cut(s) 890, 1021
PsuI RGATCY 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 351, 468, 751
RsaNI GTAC 3 cut(s) 350, 467, 750
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 573, 1027
SatI GCNGC 3 cut(s) 107, 551, 618
Sau3AI GATC 2 cut(s) 219, 938
Sau96I GGNCC 2 cut(s) 890, 1021
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 4 cut(s) 12, 136, 517, 988
ScrFI CCNGG 1 cut(s) 795
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 1021
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 9 cut(s) 11, 194, 256, 319, 338, 428, 472, 509, 612
SsiI CCGC 2 cut(s) 106, 551
SspMI CTAG 2 cut(s) 29, 386
StyD4I CCNGG 1 cut(s) 793
TaaI ACNGT 4 cut(s) 71, 373, 746, 1025
TaqI TCGA 2 cut(s) 786, 962
TaqII GACCGA 2 cut(s) 73, 332
TasI AATT 9 cut(s) 11, 194, 256, 319, 338, 428, 472, 509, 612
TatI WGTACW 3 cut(s) 349, 466, 749
TauI GCSGC 2 cut(s) 109, 553
TfiI GAWTC 5 cut(s) 25, 51, 58, 100, 361
Tru1I TTAA 2 cut(s) 573, 1027
Tru9I TTAA 2 cut(s) 573, 1027
TscAI CASTG 5 cut(s) 121, 278, 706, 718, 729
TseFI GTSAC 8 cut(s) 85, 92, 119, 520, 740, 805, 907, 991
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 8 cut(s) 85, 92, 119, 520, 740, 805, 907, 991
TspDTI ATGAA 6 cut(s) 80, 142, 170, 543, 553, 1020
TspRI CASTG 5 cut(s) 121, 278, 706, 718, 729
VpaK11BI GGWCC 1 cut(s) 1021
XapI RAATTY 5 cut(s) 11, 319, 338, 428, 472
XceI RCATGY 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 2 cut(s) 29, 386
ZrmI AGTACT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.