AT1G23310

aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
8268385 .. 8272021
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23310.1

Sequence Viewer

Length: 1446 bp
ATGGCTCTCAAGGCATTAGACTACGATACTCTGAATGAAAACGTCAAGAAGTGTCAGTATGCCGTAAGAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGAGATGGGATTCTAGTTCCGGTTCCACAGTATCCACTTTACTCAGCTACCATATCACTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGATGAGTCTGAAAACTGGGGACTTGATGTTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTAAGCGAAGCTAACATAAGAGAGATATTGAAGTTCTGTTATAACGAGAAACTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCTTTTCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAATGTCTCTGCGCAAATCTTTATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGGTGCAATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGA

Protein Analysis

481

Amino Acids

53.3

Weight (kDa)

6.49

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 84 - 454 5.5e-39 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
Acc16I TGCGCA 1 cut(s) 993
AccB7I CCANNNNNTGG 2 cut(s) 230, 1031
AccII CGCG 1 cut(s) 456
AciI CCGC 2 cut(s) 294, 456
AclI AACGTT 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 532, 1287
AfiI CCNNNNNNNGG 4 cut(s) 230, 934, 1031, 1295
AgsI TTSAA 8 cut(s) 318, 362, 442, 709, 1082, 1123, 1384, 1393
AjnI CCWGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
Alw21I GWGCWC 1 cut(s) 1204
Alw26I GTCTC 5 cut(s) 738, 871, 991, 1029, 1256
AlwNI CAGNNNCTG 1 cut(s) 1289
AoxI GGCC 2 cut(s) 322, 670
ApeKI GCWGC 3 cut(s) 97, 1128, 1211
AspLEI GCGC 2 cut(s) 193, 994
AsuHPI GGTGA 3 cut(s) 83, 655, 896
AsuII TTCGAA 1 cut(s) 1436
AsuNHI GCTAGC 1 cut(s) 416
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BalI TGGCCA 1 cut(s) 672
BanII GRGCYC 1 cut(s) 1204
Bbv12I GWGCWC 1 cut(s) 1204
BbvCI CCTCAGC 1 cut(s) 974
BbvI GCAGC 3 cut(s) 84, 1115, 1198
BccI CCATC 7 cut(s) 365, 404, 461, 805, 1006, 1109, 1332
BceAI ACGGC 3 cut(s) 47, 380, 811
BcgI CGANNNNNNTGC 4 cut(s) 1120, 1152, 1154, 1186
BciT130I CCWGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BciVI GTATCC 3 cut(s) 387, 504, 899
BclI TGATCA 1 cut(s) 645
BcoDI GTCTC 5 cut(s) 738, 871, 991, 1029, 1256
BfaI CTAG 3 cut(s) 215, 417, 476
BfmI CTRYAG 1 cut(s) 98
BfuI GTATCC 3 cut(s) 387, 504, 899
BisI GCNGC 3 cut(s) 98, 1129, 1212
BlsI GCNGC 3 cut(s) 99, 1130, 1213
Bme1390I CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BmiI GGNNCC 3 cut(s) 140, 486, 662
BmrFI CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 4 cut(s) 241, 420, 971, 1350
BmtI GCTAGC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 1089, 1121
BpmI CTGGAG 1 cut(s) 1053
Bpu10I CCTNAGC 2 cut(s) 606, 974
Bpu14I TTCGAA 1 cut(s) 1436
BpuEI CTTGAG 2 cut(s) 603, 1238
BsaBI GATNNNNATC 2 cut(s) 375, 434
BsaJI CCNNGG 3 cut(s) 655, 656, 932
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 735, 765
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 934, 1031, 1295
Bse1I ACTGG 5 cut(s) 572, 673, 673, 735, 1051
Bse3DI GCAATG 2 cut(s) 645, 1170
Bse8I GATNNNNATC 2 cut(s) 375, 434
BseBI CCWGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BseDI CCNNGG 3 cut(s) 655, 656, 932
BseGI GGATG 1 cut(s) 781
BseJI GATNNNNATC 2 cut(s) 375, 434
BseLI CCNNNNNNNGG 4 cut(s) 230, 934, 1031, 1295
BseMI GCAATG 2 cut(s) 645, 1170
BseMII CTCAG 7 cut(s) 84, 342, 519, 620, 988, 1319, 1424
BseNI ACTGG 5 cut(s) 572, 673, 673, 735, 1051
BseRI GAGGAG 1 cut(s) 959
BseXI GCAGC 3 cut(s) 84, 1115, 1198
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 2 cut(s) 324, 672
BsiHKAI GWGCWC 1 cut(s) 1204
BsiSI CCGG 2 cut(s) 482, 1364
BslFI GGGAC 2 cut(s) 585, 768
BslI CCNNNNNNNGG 4 cut(s) 230, 934, 1031, 1295
BsmAI GTCTC 5 cut(s) 738, 871, 991, 1029, 1256
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 2 cut(s) 585, 768
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 2 cut(s) 324, 672
Bsp119I TTCGAA 1 cut(s) 1436
Bsp1286I GDGCHC 1 cut(s) 1204
Bsp143I GATC 2 cut(s) 645, 1368
BspACI CCGC 2 cut(s) 294, 456
BspANI GGCC 2 cut(s) 324, 672
BspCNI CTCAG 7 cut(s) 85, 343, 518, 619, 987, 1320, 1423
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 2 cut(s) 1107, 1404
BspLI GGNNCC 3 cut(s) 140, 486, 662
BspMAI CTGCAG 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 1090
BspT104I TTCGAA 1 cut(s) 1436
BsrDI GCAATG 2 cut(s) 645, 1170
BsrI ACTGG 5 cut(s) 572, 673, 673, 735, 1051
BssECI CCNNGG 3 cut(s) 655, 656, 932
BssMI GATC 2 cut(s) 645, 1368
BssT1I CCWWGG 1 cut(s) 932
Bst2UI CCWGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
Bst4CI ACNGT 8 cut(s) 311, 492, 522, 631, 865, 1188, 1250, 1285
Bst6I CTCTTC 1 cut(s) 1090
BstAPI GCANNNNNTGC 1 cut(s) 968
BstBI TTCGAA 1 cut(s) 1436
BstC8I GCNNGC 2 cut(s) 418, 1347
BstDEI CTNAG 9 cut(s) 93, 351, 505, 606, 680, 974, 1261, 1328, 1410
BstEII GGTNACC 1 cut(s) 1188
BstF5I GGATG 1 cut(s) 781
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 2 cut(s) 193, 994
BstKTI GATC 2 cut(s) 648, 1371
BstMAI GTCTC 5 cut(s) 738, 871, 991, 1029, 1256
BstMBI GATC 2 cut(s) 645, 1368
BstMWI GCNNNNNNNGC 4 cut(s) 11, 968, 1208, 1220
BstNI CCWGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BstPI GGTNACC 1 cut(s) 1188
BstSCI CCNGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
BstSFI CTRYAG 1 cut(s) 98
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 84, 1115, 1198
BsuI GTATCC 3 cut(s) 387, 504, 899
BsuRI GGCC 2 cut(s) 324, 672
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 4 cut(s) 316, 405, 518, 680
Cac8I GCNNGC 2 cut(s) 418, 1347
CaiI CAGNNNCTG 1 cut(s) 1289
CciI TCATGA 2 cut(s) 1107, 1404
CfoI GCGC 2 cut(s) 193, 994
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 531, 1286
CviAII CATG 4 cut(s) 146, 1108, 1372, 1405
CviQI GTAC 2 cut(s) 531, 1286
DdeI CTNAG 9 cut(s) 93, 351, 505, 606, 680, 974, 1261, 1328, 1410
DpnI GATC 2 cut(s) 647, 1370
DpnII GATC 2 cut(s) 645, 1368
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 1 cut(s) 1090
EarI CTCTTC 1 cut(s) 1090
Ecl136II GAGCTC 1 cut(s) 1202
Eco130I CCWWGG 1 cut(s) 932
Eco147I AGGCCT 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 1204
Eco53kI GAGCTC 1 cut(s) 1202
Eco57I CTGAAG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 1188
EcoICRI GAGCTC 1 cut(s) 1202
EcoO65I GGTNACC 1 cut(s) 1188
EcoRII CCWGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
EcoT14I CCWWGG 1 cut(s) 932
EcoT38I GRGCYC 1 cut(s) 1204
ErhI CCWWGG 1 cut(s) 932
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 4 cut(s) 149, 1111, 1375, 1408
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 2 cut(s) 585, 768
FatI CATG 4 cut(s) 145, 1107, 1371, 1404
FauNDI CATATG 1 cut(s) 1045
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 98, 1129, 1212
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 1 cut(s) 1204
Fsp4HI GCNGC 3 cut(s) 98, 1129, 1212
FspBI CTAG 3 cut(s) 215, 417, 476
FspI TGCGCA 1 cut(s) 993
GlaI GCGC 2 cut(s) 192, 993
GluI GCNGC 3 cut(s) 98, 1129, 1212
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 2 cut(s) 324, 672
HapII CCGG 2 cut(s) 482, 1364
HgaI GACGC 1 cut(s) 770
HhaI GCGC 2 cut(s) 193, 994
Hin1II CATG 4 cut(s) 149, 1111, 1375, 1408
Hin6I GCGC 2 cut(s) 191, 992
HinP1I GCGC 2 cut(s) 191, 992
HinfI GANTC 8 cut(s) 314, 472, 557, 1075, 1082, 1119, 1275, 1408
HpaII CCGG 2 cut(s) 482, 1364
HphI GGTGA 3 cut(s) 83, 655, 896
Hpy166II GTNNAC 2 cut(s) 74, 893
Hpy188I TCNGA 5 cut(s) 33, 86, 94, 562, 1329
Hpy188III TCNNGA 9 cut(s) 46, 318, 439, 551, 1079, 1108, 1296, 1384, 1405
Hpy8I GTNNAC 2 cut(s) 74, 893
Hpy99I CGWCG 2 cut(s) 1142, 1400
HpyAV CCTTC 6 cut(s) 101, 335, 599, 796, 1151, 1307
HpyCH4III ACNGT 8 cut(s) 311, 492, 522, 631, 865, 1188, 1250, 1285
HpyCH4IV ACGT 4 cut(s) 42, 132, 1137, 1239
HpyCH4V TGCA 8 cut(s) 100, 260, 433, 962, 1131, 1146, 1163, 1214
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 968, 1208, 1220
HpyF3I CTNAG 9 cut(s) 93, 351, 505, 606, 680, 974, 1261, 1328, 1410
HpySE526I ACGT 4 cut(s) 42, 132, 1137, 1239
Hsp92II CATG 4 cut(s) 149, 1111, 1375, 1408
HspAI GCGC 2 cut(s) 191, 992
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 2 cut(s) 645, 1368
LguI GCTCTTC 1 cut(s) 1090
LmnI GCTCC 4 cut(s) 208, 413, 800, 1199
Lsp1109I GCAGC 3 cut(s) 84, 1115, 1198
LweI GCATC 4 cut(s) 241, 420, 971, 1350
MaeI CTAG 3 cut(s) 215, 417, 476
MaeII ACGT 4 cut(s) 42, 132, 1137, 1239
MaeIII GTNAC 2 cut(s) 383, 1188
MalI GATC 2 cut(s) 647, 1370
MboI GATC 2 cut(s) 645, 1368
MboII GAAGA 4 cut(s) 728, 1104, 1107, 1364
MfeI CAATTG 1 cut(s) 966
MhlI GDGCHC 1 cut(s) 1204
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 3 cut(s) 442, 966, 1147
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 2 cut(s) 566, 1402
MmeI TCCRAC 1 cut(s) 211
Mox20I TGGCCA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 672
MseI TTAA 2 cut(s) 651, 1017
Msp20I TGGCCA 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 248, 1128
MspI CCGG 2 cut(s) 482, 1364
MspR9I CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 11, 968, 1208, 1220
NdeI CATATG 1 cut(s) 1045
NdeII GATC 2 cut(s) 645, 1368
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 4 cut(s) 149, 1111, 1375, 1408
NlaIV GGNNCC 3 cut(s) 140, 486, 662
NmuCI GTSAC 1 cut(s) 383
NsbI TGCGCA 1 cut(s) 993
NspV TTCGAA 1 cut(s) 1436
PagI TCATGA 2 cut(s) 1107, 1404
PasI CCCWGGG 1 cut(s) 656
PceI AGGCCT 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 1090
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 6 cut(s) 314, 472, 1075, 1082, 1119, 1275
PflMI CCANNNNNTGG 2 cut(s) 230, 1031
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 3 cut(s) 99, 1130, 1213
PleI GAGTC 2 cut(s) 565, 1402
PpsI GAGTC 2 cut(s) 565, 1402
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 1204
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
PspEI GGTNACC 1 cut(s) 1188
PspGI CCWGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
PspN4I GGNNCC 3 cut(s) 140, 486, 662
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 1289
PvuII CAGCTG 2 cut(s) 248, 1128
RsaI GTAC 2 cut(s) 532, 1287
RsaNI GTAC 2 cut(s) 531, 1286
SacI GAGCTC 1 cut(s) 1204
SapI GCTCTTC 1 cut(s) 1090
SaqAI TTAA 2 cut(s) 651, 1017
SatI GCNGC 3 cut(s) 98, 1129, 1212
Sau3AI GATC 2 cut(s) 645, 1368
SchI GAGTC 2 cut(s) 566, 1402
ScrFI CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
SduI GDGCHC 1 cut(s) 1204
SfaNI GCATC 4 cut(s) 241, 420, 971, 1350
SfcI CTRYAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 1436
SmlI CTYRAG 3 cut(s) 8, 618, 1253
SmoI CTYRAG 3 cut(s) 8, 618, 1253
Sse9I AATT 3 cut(s) 442, 966, 1147
SseBI AGGCCT 1 cut(s) 324
SsiI CCGC 2 cut(s) 294, 456
SspMI CTAG 3 cut(s) 215, 417, 476
SstI GAGCTC 1 cut(s) 1204
StuI AGGCCT 1 cut(s) 324
StyD4I CCNGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 8 cut(s) 311, 492, 522, 631, 865, 1188, 1250, 1285
TaiI ACGT 4 cut(s) 45, 135, 1140, 1242
TaqI TCGA 2 cut(s) 592, 1436
TasI AATT 3 cut(s) 442, 966, 1147
TfiI GAWTC 6 cut(s) 314, 472, 1075, 1082, 1119, 1275
Tru1I TTAA 2 cut(s) 651, 1017
Tru9I TTAA 2 cut(s) 651, 1017
TscAI CASTG 4 cut(s) 316, 412, 525, 680
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 97, 1128, 1211
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 51, 346, 1032, 1393
TspGWI ACGGA 2 cut(s) 195, 589
TspRI CASTG 4 cut(s) 316, 412, 525, 680
Van91I CCANNNNNTGG 2 cut(s) 230, 1031
XspI CTAG 3 cut(s) 215, 417, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.