Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005109

Physical Location & Seq

Genomic Coordinates Reverse (-)

43421411 .. 43422874

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0262300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATAGATCAAGACAGGCAAGGAGCAGGAGCACCCCATGGAGTTCTGCTAGTAGTTGTGGTGGTGTTGGTGATATTCGTCCCCTTCTTCCTCGGCGAGCAAGGTGAGGCCATAACTGAAGGCATCGCCGAGCTTCTCAGCCCCGTCGGGCTTCTCCTCCTCCCCATCATCCTCCTCCTCACCATCCAGTTCTTGTCCTCGCCTCACGGCTCTTTTGTCTCCCCCATCTTCTCCACCGGAGAGCCCAACACCATCCACAGGGTCAGTGGCTCCCCGGTGGGCGTCGCATTGGTTCTTCTACTCGTCTTGTTTCTTCTCTACAATCGCATGTCGATCTTCGGTGGCGGCGACGATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006950 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009853 GO:0009987 GO:0016020 GO:0016740 GO:0016769 GO:0036293 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047635 GO:0047958 GO:0048046 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

120

Amino Acids

12.71

Weight (kDa)

4.45

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23310 AT1G23310 AT1G70580 AT1G70580 AT1G70580 AT1G70580
fragaria_vesca	FvH4_4g25450 FvH4_4g25450 FvH4_4g25450
malus_domestica	MD13G1102800.v1.1 MD16G1103000.v1.1
prunus_persica	Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1
pyrus_communis	pycom13g08990 pycom16g08770
rosa_chinensis	RchiOBHm_Chr4g0432761
rosa_laevigata	RLG00000006814
rosa_multiflora	Rmu_sc0012180.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374220
rosa_rugosa	Rorug04G0262300 Rorug04G0262400 Rorug04G0262500 Rorug04G0262600 Rorug04G0262700
rosa_samantha	Rh4BG324900 Rh4CG339900 Rh4DG320100
rosa_wichuraiana	Rw4G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	82, 116, 172
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	34
BccI	CCATC	4 cut(s)	173, 191, 233, 260
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	37, 91, 273
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	37, 91, 273
BseGI	GGATG	3 cut(s)	168, 183, 252
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	4 cut(s)	146, 149, 164, 167
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	237, 275
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	34, 246
Bsp143I	GATC	2 cut(s)	7, 333
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	37, 91, 273
BssMI	GATC	2 cut(s)	7, 333
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	168, 183, 252
BstKTI	GATC	2 cut(s)	10, 336
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	7, 333
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	168, 183, 252
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	98
CseI	GACGC	1 cut(s)	271
CviAII	CATG	2 cut(s)	38, 328
CviJI	RGCY	7 cut(s)	110, 133, 141, 151, 210, 244, 270
CviKI_1	RGCY	7 cut(s)	110, 133, 141, 151, 210, 244, 270
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	9, 335
DpnII	GATC	2 cut(s)	7, 333
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 331
FaiI	YATR	3 cut(s)	39, 113, 329
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	37, 327
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	3 cut(s)	155, 170, 239
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	237, 275
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	41, 331
HpaII	CCGG	2 cut(s)	237, 275
HphI	GGTGA	3 cut(s)	82, 116, 172
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	3 cut(s)	149, 287, 353
HpyAV	CCTTC	2 cut(s)	94, 113
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	41, 331
Kzo9I	GATC	2 cut(s)	7, 333
LmnI	GCTCC	3 cut(s)	23, 29, 275
LpnPI	CCDG	5 cut(s)	12, 200, 244, 250, 288
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	9, 335
MboI	GATC	2 cut(s)	7, 333
MboII	GAAGA	5 cut(s)	79, 220, 287, 305, 328
MhlI	GDGCHC	2 cut(s)	34, 246
MnlI	CCTC	9 cut(s)	100, 101, 167, 170, 182, 185, 188, 208, 213
MspI	CCGG	2 cut(s)	237, 275
MspR9I	CCNGG	1 cut(s)	275
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	7, 333
NlaIII	CATG	2 cut(s)	41, 331
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	2 cut(s)	72, 154
NspI	RCATGY	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	271
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	2 cut(s)	7, 333
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	34, 246
SetI	ASST	2 cut(s)	106, 135
SfaNI	GCATC	1 cut(s)	132
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	37
TaqI	TCGA	1 cut(s)	332
TauI	GCSGC	1 cut(s)	348
TscAI	CASTG	1 cut(s)	271
TspRI	CASTG	1 cut(s)	271
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.