Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005109

Physical Location & Seq

Genomic Coordinates Forward (+)

43447769 .. 43454659

Gene Structure 6891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3981 bp

ATGAACTTGCTTGGTGACTCGGTGGAAGATGTAGCTAGCTGTTCTACTACTGCTTTGGTTTCGTCTCATAATCAAGAGAGATTAGACCTCAAGTCCATTCGGGCGGTTGTCATTTCAGTCAATCAATGCATTCTCAAACTCATAGCAAATGCCAAAACTAGAAACTCTATAAGGGTGAGATGTATCTCCAAGCTTCAAAATCAGAAACAGGATTTCTTCGAATTCTCTGACCAGTCTGTCATATCAAATCTTTACTGGGGTATTGACAGCATAGAAGCTGCAATTACCGCCGAATGGCCAGAAGAGAAAGCCGCTCAGCTGAGGAAGGCAGAGCAGATGCTACAAGTGCCCGCGCTACTCGATGAGGATGGAGTCACAGCTGGAATTCCGAACAGTTATTTGGTGTGTTGCTCATACTTTTACCTCTCTGTTGTTCGAAAACTCCAAGAGGATGAGTGGCAGGTTGCACTGCATTTCCTACAGGCCGTGCTGGTCTCCCCGAGACTTGTTCAGACAGAATTTGCGCATGACCTTTATGAAAGTCTTTTCCCGACTTGCGGCCGTTCTGAAAGACAAGAAATAAGAGCGAGTAAGAGCTTGGAATCAATTGACAAGGATGAAGCAATAAGGCAGATGGCAAGGATATATAGAGATTGGTTGATGTATTATAAGGTCATGTTATATGGCGCGACTCCTCAGGGTCAAGGTGGAGGATACAGAGGCATTTTGTCCCCTGACAAAGAGTCACTATATTCTCTACATGGGAAATCCACTAGGTCGGACTGTTCAAATAATATTGAGCATGACCACAGCTTGCACACTCAATGGAATTATGGAAAAGTGCACCCTTTTGATTCTCAAGAAGATATTGCCATCGAAGATGAACTGAAACAATCCATCCACATCTCAGAATTTGAAGAATATGGGAAATCCAAAAATGATTTGAATCAAGCAACAGAGTTTCATGTTAAAACTAGAGAGCTCCAGAGGAATTCAAGTATTAAAAGACTCCAAGATTTGCTGGATGACTCTCAATCAGACACACCAACTTCAGTGGATTCATGCTCTGATTATTCAGATTATGACATTGAGTCAGAGGTCATTGATGGTGGTGAGTGCTCAACCAGAGATGCAAGAATAGGTGCAGATTTTTCCAAGAAACTGCAGGCTACTAGCTCCACATCAGACCCAAAGTACGAAGCATTATCTTTTTCACAAGTCTGTCAGGATCCAGTCCCTAACGAAGTCATTCAAGTAAATAACTCTATGATTCTTTCGAGCAGATTCACAGATTCCATCAATGGTTTATTAACTATTTCAGAGCATAGAGATAAAAGATCAAAGACCCATCAGAATTTATATGTACAAAAGGAGTATGCATCTCAGCGGAACTATAGGATCAACCAAAGGGATCACCAAAGAAGTGTTGCAAGGAAAAAACATAGTTCTCGTAGCCAGAAAAGCTCTATTGAACTTCGCTTACATTCCACAAAAGATTCGAAAAGTGAACTACTGAGTATTACTGAAAAAGCAATTTCAAAACTATTTCAGTGGGAAGGATTGGGAAAATGGGATGAAGATTATGCTGTAGAAGTTACAACAATATATCAAATACTATGCAACAAAAAAGGAGAGAAATGTGCTGTCTTGAAAGACATGATATTGGATCAACTGCTCATAGGTATTTCAGCTTCAAAGGAGGAGAAAGTGATAAGGGTATCAGTGTCTATACTAACTACTATTGTTGCAGCTAATAAGTCAGTTATCGAGGACATAAAGAAGAAAGGTCTGCAGTTATCTGATTTGGCAAGTGCTCTAAAAAGAAATGTTCATGAGGCAGCAATACTGTTTTATCTAATGAATCCATCTCCTACAGAAATTAAGACTTTAGAACTTTTACCGGCATTGTTGGGGGTCGTGTGCTCTCCAAACAGTTATAAGGGTAGGCCAGCATCAGTGCCAACACCTCTGACAGCATCACTAATGATTATTGGAGTTTTAGTATCTTCATTTGACCATGCCACAAATAATGTGCACTTGGCTGAAATCAGTTATCCCAATGTGCTGCATGGGCTCCTAGTTGTTGCAAGAGATAGTAACATTGAAGAATTGATCTCCTGGGCCACTATTCTTGTCAAATGCATACAATACGATGGAAACTGCAGAAGATATATATCAAGATTAGCTCCAATGGCTCCATTTTCCCGTCTCCTAGAATGTAAGATGAAGCATGCCAGGTGCATAGCGCTGGAATTTTTTCATGAAGTTCTTTGTATTCCAAGGTCATCGGCTACTGCCTTGTTGCAGAGGCTGCAAAAAGAAGGAAGCACGAAGATTATGAACTCACTCATGCTTTGTGTCCAACAATTGCAACCTGAATACCAACTTTTGGCAGCAAATTTGCTGCTTCATTTAGATACACTAGATAACTCCTCCTGTAAGAGTGCATTGACAGAAGAAGCTATGCAGGTTCTCCTCAAGTTGGTCGCATCTGAAGAAAGTTCCACTACACAGCACTTATCTGCATTCATCTTATCAAATCTCGGTGGAACATATTCATGGGCAGGGGAACCATATACAGTAGCATGGTTGGTTAAAAAGGCAGGTGTGACTTCCTCGTATCGACGGAATATGATAAAAACTATCCATTGGTTGGATGATTGCTTAGAGGATTCTGGCACGGACTCATGGTGCAGCAAAATTTCCAGAAGCATCATTAACATTGGGAATCCTGTCTTTGATTCTTTAGTGAAGGGTCTAAAGAGCACAACAAGGAAGGTTTCTAGGGACTGTCTAATAGCCATAGCATGGCTTGGGTTTGAAATTGCAAAGAGTCCAGATATCATCAGATATTCTGCCTGTGAGATCTTACTTAGTGGAGTTGAGCAATTTTTGCATCCTGGATTGGAGCTAGAAGAACGAGTTCTAGCATGTCTCTGCATATATAACTATGCTTCTGGTAAAGGGATGAAAAAGTTGATTCATTTCTCGGAAGGAGTGAGAGAATCACTAAGACGCTTGTCAAATGTAACCTGGATGGCAGAGGAGCTACATAAAGTAGCTGATTATGTTCTGCCAAACCGATCACGCATTTCTTGTGTTCATACCCAAATTCTCGAGGTTGGAGTCAATTACAGTGGAGCTGTATGTGCCCTCATGTATTACAAAGGATTTCTTCATGGTGGCTACTCAGATGGTTCTGTGAAGGTCTGGAACATAAAAGGTCAGTCAGCCACACTCGTATGGGACATGAAGGAGCACAAAAAGGCAGTTACATGCTTTTCACTACTTGAATCCAGGGACAGCCTTATAAGTGGATCACTGGACAAAACTATCAGGGTCTGGCAAGTGGTCCACAAAAAACTGGAGTGCATTGAGGTGATAGAAACCAAGGAACCAATTCGGCATCTGAATACATGCGGGGACATGATATTTGCAATTACCCGTGGCCATGGGATTAAGGTGATTGATGCATCAAGAAAGGTCAAAGATAATTGCACGAATAAAAAGGTAAAGTGTATGGCGGTGGTTCAGGGGAAGATTTATGCAGGTTGCAAGGATTCAAGCATACAGGAGTTGTCTACAACAAGCAATCGGGCACAAGAGATCAAAGCAGCATCAAAATTTTGGAGGCTGCAACGGAGACCCATAAATGCAGTTGTCACGTATAAAGATTGGCTTTACAGTGCAAGTTCAATTGTGCAAGGTTCAAACTTGAAGGAATGGAAAAGACACGGCAAACCCCAAATGTCACTTAAAACCGGGAAAAGAGAAAAGGTGACGGCAATGGGAATAACGGAAGACTTCATATACCTCAACTGCAACTCATCAACAAACAGCATCCAGATATGGCTGAGAGGGACACAGCAGAAAGTGGGCAGAATCTCAGCAGGAAGCAGAATTACGAGCATCCTCACAGCCAACGACATTATCTTGTGTGGTACCGAAGCGGGGCTAATCAAGGGATGGATCCCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006950 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009853 GO:0009987 GO:0016020 GO:0016740 GO:0016769 GO:0036293 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047635 GO:0047958 GO:0048046 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

1326

Amino Acids

148.9

Weight (kDa)

8.38

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_LIN	PF23568	33 - 184	4.5e-29	E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_2nd	PF23654	503 - 664	5.3e-48	E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_C	PF23628	668 - 1020	7.8e-55	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Beta-prop_TEP1_2nd	PF25047	1050 - 1118	6.5e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	1059 - 1137	6.5e-11	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	1061 - 1194	2.8e-08	THOC3 beta-propeller domain
WD40_Prp19	PF24814	1062 - 1134	2e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	1063 - 1136	5.9e-09	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23310 AT1G23310 AT1G70580 AT1G70580 AT1G70580 AT1G70580
fragaria_vesca	FvH4_4g25450 FvH4_4g25450 FvH4_4g25450
malus_domestica	MD13G1102800.v1.1 MD16G1103000.v1.1
prunus_persica	Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1
pyrus_communis	pycom13g08990 pycom16g08770
rosa_chinensis	RchiOBHm_Chr4g0432761
rosa_laevigata	RLG00000006814
rosa_multiflora	Rmu_sc0012180.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374220
rosa_rugosa	Rorug04G0262300 Rorug04G0262400 Rorug04G0262500 Rorug04G0262600 Rorug04G0262700
rosa_samantha	Rh4BG324900 Rh4CG339900 Rh4DG320100
rosa_wichuraiana	Rw4G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	669, 1938, 3311
AarI	CACCTGC	1 cut(s)	2594
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	4 cut(s)	451, 2458, 2594, 3539
Acc65I	GGTACC	1 cut(s)	3941
AccB1I	GGYRCC	1 cut(s)	3941
AccB7I	CCANNNNNTGG	3 cut(s)	2389, 2653, 2808
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	3581
AccII	CGCG	2 cut(s)	353, 689
AciI	CCGC	9 cut(s)	104, 288, 312, 351, 558, 1387, 3420, 3524, 3950
AclWI	GGATC	8 cut(s)	1223, 1236, 1406, 1419, 1674, 3325, 3964, 3977
AcoI	YGGCCR	3 cut(s)	296, 559, 3448
AcuI	CTGAAG	2 cut(s)	1035, 2514
AfaI	GTAC	3 cut(s)	1196, 1365, 3943
AfeI	AGCGCT	1 cut(s)	2247
AfiI	CCNNNNNNNGG	7 cut(s)	294, 557, 2389, 2482, 2653, 2808, 3951
AhdI	GACNNNNNGTC	3 cut(s)	91, 742, 1090
AjnI	CCWGG	5 cut(s)	2117, 2234, 2899, 3032, 3296
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
Alw21I	GWGCWC	8 cut(s)	846, 984, 1121, 1816, 1925, 2037, 2768, 3261
Alw26I	GTCTC	6 cut(s)	69, 496, 499, 2213, 2939, 3637
Alw44I	GTGCAC	2 cut(s)	842, 2033
AlwI	GGATC	8 cut(s)	1223, 1236, 1406, 1419, 1674, 3325, 3964, 3977
AlwNI	CAGNNNCTG	2 cut(s)	2311, 3342
Ama87I	CYCGRG	2 cut(s)	499, 3116
Aor51HI	AGCGCT	1 cut(s)	2247
AoxI	GGCC	6 cut(s)	296, 483, 559, 1946, 2121, 3448
ApaLI	GTGCAC	2 cut(s)	842, 2033
ArsI	GACNNNNNNTTYG	2 cut(s)	3416, 3448
Asp700I	GAANNNNTTC	5 cut(s)	1248, 2256, 2554, 2922, 3399
Asp718I	GGTACC	1 cut(s)	3941
AspLEI	GCGC	4 cut(s)	355, 526, 689, 2248
AspS9I	GGNCC	2 cut(s)	2121, 3352
AsuC2I	CCSGG	1 cut(s)	3763
AsuHPI	GGTGA	7 cut(s)	26, 187, 1124, 1406, 3391, 3475, 3790
AsuII	TTCGAA	3 cut(s)	219, 436, 1499
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	2 cut(s)	499, 3116
AvaII	GGWCC	1 cut(s)	3352
AxyI	CCTNAGG	1 cut(s)	696
BaeGI	GKGCMC	5 cut(s)	351, 846, 2037, 3154, 3601
BalI	TGGCCA	2 cut(s)	298, 3450
BamHI	GGATCC	2 cut(s)	1228, 3969
BanI	GGYRCC	1 cut(s)	3941
BanII	GRGCYC	2 cut(s)	984, 2076
BarI	GAAGNNNNNNTAC	4 cut(s)	1675, 1707, 3886, 3918
BbsI	GAAGAC	1 cut(s)	3807
Bbv12I	GWGCWC	8 cut(s)	846, 984, 1121, 1816, 1925, 2037, 2768, 3261
BbvCI	CCTCAGC	1 cut(s)	320
BceAI	ACGGC	4 cut(s)	470, 546, 3751, 3798
BciT130I	CCWGG	5 cut(s)	2119, 2236, 2901, 3034, 3298
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	3763
BcoDI	GTCTC	6 cut(s)	69, 496, 499, 2213, 2939, 3637
BfmI	CTRYAG	8 cut(s)	479, 1163, 1393, 1587, 1790, 1872, 2161, 3977
BfoI	RGCGCY	1 cut(s)	2249
BfuAI	ACCTGC	4 cut(s)	451, 2458, 2594, 3539
BfuI	GTATCC	1 cut(s)	707
BglII	AGATCT	1 cut(s)	2865
BlpI	GCTNAGC	1 cut(s)	315
Bme1390I	CCNGG	6 cut(s)	2119, 2236, 2901, 3034, 3298, 3763
Bme18I	GGWCC	1 cut(s)	3352
BmeRI	GACNNNNNGTC	3 cut(s)	91, 742, 1090
BmeT110I	CYCGRG	2 cut(s)	499, 3116
BmgT120I	GGNCC	2 cut(s)	2121, 3352
BmiI	GGNNCC	7 cut(s)	1230, 2075, 2196, 2571, 3396, 3943, 3971
BmrFI	CCNGG	6 cut(s)	2119, 2236, 2901, 3034, 3298, 3763
BmrI	ACTGGG	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	3019
BpiI	GAAGAC	1 cut(s)	3807
BpmI	CTGGAG	2 cut(s)	968, 3386
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	3 cut(s)	219, 436, 1499
BpuEI	CTTGAG	3 cut(s)	74, 843, 2462
BpuMI	CCSGG	1 cut(s)	3763
BsaAI	YACGTR	1 cut(s)	3666
BsaBI	GATNNNNATC	2 cut(s)	945, 2173
BsaI	GGTCTC	2 cut(s)	499, 3637
BsaJI	CCNNGG	6 cut(s)	2118, 2279, 3297, 3390, 3445, 3451
BsaXI	ACNNNNNCTCC	2 cut(s)	1986, 2016
Bsc4I	CCNNNNNNNGG	7 cut(s)	294, 557, 2389, 2482, 2653, 2808, 3951
Bse118I	RCCGGY	1 cut(s)	1900
Bse1I	ACTGG	5 cut(s)	232, 260, 1232, 3327, 3369
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	1 cut(s)	3792
Bse8I	GATNNNNATC	2 cut(s)	945, 2173
BseBI	CCWGG	5 cut(s)	2119, 2236, 2901, 3034, 3298
BseDI	CCNNGG	6 cut(s)	2118, 2279, 3297, 3390, 3445, 3451
BseJI	GATNNNNATC	2 cut(s)	945, 2173
BseLI	CCNNNNNNNGG	7 cut(s)	294, 557, 2389, 2482, 2653, 2808, 3951
BseMI	GCAATG	1 cut(s)	3792
BseMII	CTCAG	9 cut(s)	311, 329, 710, 921, 1397, 1505, 3204, 3845, 3900
BseNI	ACTGG	5 cut(s)	232, 260, 1232, 3327, 3369
BseRI	GAGGAG	5 cut(s)	684, 1715, 2422, 2465, 3059
BseSI	GKGCMC	5 cut(s)	351, 846, 2037, 3154, 3601
BseX3I	CGGCCG	1 cut(s)	559
BsgI	GTGCAG	2 cut(s)	1164, 2713
Bsh1236I	CGCG	2 cut(s)	353, 689
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	6 cut(s)	298, 485, 561, 1948, 2123, 3450
BshNI	GGYRCC	1 cut(s)	3941
BsiEI	CGRYCG	1 cut(s)	562
BsiHKAI	GWGCWC	8 cut(s)	846, 984, 1121, 1816, 1925, 2037, 2768, 3261
BsiHKCI	CYCGRG	2 cut(s)	499, 3116
BsiSI	CCGG	2 cut(s)	1901, 3762
BslFI	GGGAC	7 cut(s)	715, 1220, 2801, 3260, 3314, 3437, 3874
BslI	CCNNNNNNNGG	7 cut(s)	294, 557, 2389, 2482, 2653, 2808, 3951
BsmAI	GTCTC	6 cut(s)	69, 496, 499, 2213, 2939, 3637
BsmBI	CGTCTC	2 cut(s)	69, 2213
BsmFI	GGGAC	7 cut(s)	715, 1220, 2801, 3260, 3314, 3437, 3874
BsmI	GAATGC	2 cut(s)	129, 2525
BsnI	GGCC	6 cut(s)	298, 485, 561, 1948, 2123, 3450
Bso31I	GGTCTC	2 cut(s)	499, 3637
BsoBI	CYCGRG	2 cut(s)	499, 3116
Bsp119I	TTCGAA	3 cut(s)	219, 436, 1499
Bsp1407I	TGTACA	1 cut(s)	1363
Bsp1720I	GCTNAGC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	3451
BspACI	CCGC	9 cut(s)	104, 288, 312, 351, 558, 1387, 3420, 3524, 3950
BspANI	GGCC	6 cut(s)	298, 485, 561, 1948, 2123, 3450
BspCNI	CTCAG	9 cut(s)	312, 328, 709, 920, 1396, 1506, 3203, 3846, 3899
BspFNI	CGCG	2 cut(s)	353, 689
BspHI	TCATGA	2 cut(s)	1831, 2260
BspLI	GGNNCC	7 cut(s)	1230, 2075, 2196, 2571, 3396, 3943, 3971
BspMAI	CTGCAG	3 cut(s)	1167, 1794, 2165
BspMI	ACCTGC	4 cut(s)	451, 2458, 2594, 3539
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	8 cut(s)	1223, 1236, 1406, 1419, 1674, 3325, 3964, 3977
BspT104I	TTCGAA	3 cut(s)	219, 436, 1499
BspT107I	GGYRCC	1 cut(s)	3941
BspTNI	GGTCTC	2 cut(s)	499, 3637
BsrBI	CCGCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	3792
BsrFI	RCCGGY	1 cut(s)	1900
BsrGI	TGTACA	1 cut(s)	1363
BsrI	ACTGG	5 cut(s)	232, 260, 1232, 3327, 3369
BssAI	RCCGGY	1 cut(s)	1900
BssECI	CCNNGG	6 cut(s)	2118, 2279, 3297, 3390, 3445, 3451
BssT1I	CCWWGG	3 cut(s)	2279, 3390, 3451
Bst2UI	CCWGG	5 cut(s)	2119, 2236, 2901, 3034, 3298
Bst4CI	ACNGT	8 cut(s)	395, 785, 1848, 1934, 2581, 2792, 3137, 3686
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	2 cut(s)	2311, 2893
BstAUI	TGTACA	1 cut(s)	1363
BstBAI	YACGTR	1 cut(s)	3666
BstBI	TTCGAA	3 cut(s)	219, 436, 1499
BstC8I	GCNNGC	6 cut(s)	37, 351, 815, 1167, 1950, 2232
BstDSI	CCRYGG	2 cut(s)	3445, 3451
BstFNI	CGCG	2 cut(s)	353, 689
BstH2I	RGCGCY	1 cut(s)	2249
BstHHI	GCGC	4 cut(s)	355, 526, 689, 2248
BstMAI	GTCTC	6 cut(s)	69, 496, 499, 2213, 2939, 3637
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 346, 1461, 2071, 2192, 2311, 2893, 3149
BstNI	CCWGG	5 cut(s)	2119, 2236, 2901, 3034, 3298
BstNSI	RCATGY	4 cut(s)	2234, 2934, 3279, 3420
BstPAI	GACNNNNGTC	1 cut(s)	3019
BstSCI	CCNGG	6 cut(s)	2117, 2234, 2899, 3032, 3296, 3761
BstSFI	CTRYAG	8 cut(s)	479, 1163, 1393, 1587, 1790, 1872, 2161, 3977
BstSLI	GKGCMC	5 cut(s)	351, 846, 2037, 3154, 3601
BstUI	CGCG	2 cut(s)	353, 689
BstV2I	GAAGAC	1 cut(s)	3807
BstX2I	RGATCY	3 cut(s)	1228, 2865, 3969
BstYI	RGATCY	3 cut(s)	1228, 2865, 3969
BstZI	CGGCCG	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	6 cut(s)	298, 485, 561, 1948, 2123, 3450
BtgI	CCRYGG	2 cut(s)	3445, 3451
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	8 cut(s)	467, 1059, 1556, 1728, 1962, 3142, 3320, 3691
BveI	ACCTGC	4 cut(s)	451, 2458, 2594, 3539
Cac8I	GCNNGC	6 cut(s)	37, 351, 815, 1167, 1950, 2232
CaiI	CAGNNNCTG	2 cut(s)	2311, 3342
CciI	TCATGA	2 cut(s)	1831, 2260
CfoI	GCGC	4 cut(s)	355, 526, 689, 2248
Cfr10I	RCCGGY	1 cut(s)	1900
Cfr13I	GGNCC	2 cut(s)	2121, 3352
CseI	GACGC	1 cut(s)	3024
Csp6I	GTAC	3 cut(s)	1195, 1364, 3942
CspCI	CAANNNNNGTGG	6 cut(s)	1035, 1070, 2113, 2148, 3118, 3153
CviQI	GTAC	3 cut(s)	1195, 1364, 3942
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	3 cut(s)	91, 742, 1090
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	3 cut(s)	296, 559, 3448
EagI	CGGCCG	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	297
Eam1105I	GACNNNNNGTC	3 cut(s)	91, 742, 1090
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	982
EclXI	CGGCCG	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	2279, 3390, 3451
Eco24I	GRGCYC	2 cut(s)	984, 2076
Eco31I	GGTCTC	2 cut(s)	499, 3637
Eco32I	GATATC	1 cut(s)	2842
Eco47I	GGWCC	1 cut(s)	3352
Eco47III	AGCGCT	1 cut(s)	2247
Eco52I	CGGCCG	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	2 cut(s)	1035, 2514
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	2 cut(s)	499, 3116
EcoICRI	GAGCTC	1 cut(s)	982
EcoRI	GAATTC	3 cut(s)	221, 384, 991
EcoRII	CCWGG	5 cut(s)	2117, 2234, 2899, 3032, 3296
EcoRV	GATATC	1 cut(s)	2842
EcoT14I	CCWWGG	3 cut(s)	2279, 3390, 3451
EcoT22I	ATGCAT	4 cut(s)	131, 1381, 2144, 3475
EcoT38I	GRGCYC	2 cut(s)	984, 2076
ErhI	CCWWGG	3 cut(s)	2279, 3390, 3451
Esp3I	CGTCTC	2 cut(s)	69, 2213
FalI	AAGNNNNNCTT	4 cut(s)	3159, 3191, 3663, 3695
FaqI	GGGAC	7 cut(s)	715, 1220, 2801, 3260, 3314, 3437, 3874
FauI	CCCGC	3 cut(s)	358, 3413, 3943
FblI	GTMKAC	1 cut(s)	3581
FriOI	GRGCYC	2 cut(s)	984, 2076
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	4 cut(s)	354, 525, 688, 2247
GsuI	CTGGAG	2 cut(s)	968, 3386
HaeII	RGCGCY	1 cut(s)	2249
HaeIII	GGCC	6 cut(s)	298, 485, 561, 1948, 2123, 3450
HapII	CCGG	2 cut(s)	1901, 3762
HgaI	GACGC	1 cut(s)	3024
HhaI	GCGC	4 cut(s)	355, 526, 689, 2248
Hin6I	GCGC	4 cut(s)	353, 524, 687, 2246
HinP1I	GCGC	4 cut(s)	353, 524, 687, 2246
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	2 cut(s)	1901, 3762
HphI	GGTGA	7 cut(s)	26, 187, 1124, 1406, 3391, 3475, 3790
Hpy166II	GTNNAC	5 cut(s)	844, 1508, 2035, 3355, 3582
Hpy8I	GTNNAC	5 cut(s)	844, 1508, 2035, 3355, 3582
Hpy99I	CGWCG	1 cut(s)	2628
HpyAV	CCTTC	9 cut(s)	319, 1550, 2315, 2746, 2770, 2987, 3199, 3247, 3712
HpyCH4III	ACNGT	8 cut(s)	395, 785, 1848, 1934, 2581, 2792, 3137, 3686
HpyCH4IV	ACGT	1 cut(s)	3665
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 346, 1461, 2071, 2192, 2311, 2893, 3149
HpySE526I	ACGT	1 cut(s)	3665
HspAI	GCGC	4 cut(s)	353, 524, 687, 2246
KpnI	GGTACC	1 cut(s)	3945
LmnI	GCTCC	9 cut(s)	987, 1181, 2079, 2191, 2200, 2908, 3046, 3140, 3256
MaeII	ACGT	1 cut(s)	3665
MbiI	CCGCTC	1 cut(s)	314
MfeI	CAATTG	3 cut(s)	606, 2366, 3696
MflI	RGATCY	3 cut(s)	1228, 2865, 3969
MlsI	TGGCCA	2 cut(s)	298, 3450
MluNI	TGGCCA	2 cut(s)	298, 3450
MmeI	TCCRAC	4 cut(s)	759, 2386, 2634, 3103
Mox20I	TGGCCA	2 cut(s)	298, 3450
Mph1103I	ATGCAT	4 cut(s)	131, 1381, 2144, 3475
MroXI	GAANNNNTTC	5 cut(s)	1248, 2256, 2554, 2922, 3399
MscI	TGGCCA	2 cut(s)	298, 3450
MseI	TTAA	8 cut(s)	969, 1002, 1310, 1881, 2595, 2718, 3459, 3756
MslI	CAYNNNNRTG	3 cut(s)	2557, 3241, 3377
Msp20I	TGGCCA	2 cut(s)	298, 3450
MspA1I	CMGCKG	3 cut(s)	319, 380, 1387
MspI	CCGG	2 cut(s)	1901, 3762
MspR9I	CCNGG	6 cut(s)	2119, 2236, 2901, 3034, 3298, 3763
MunI	CAATTG	3 cut(s)	606, 2366, 3696
Mva1269I	GAATGC	2 cut(s)	129, 2525
MvaI	CCWGG	5 cut(s)	2119, 2236, 2901, 3034, 3298
MvnI	CGCG	2 cut(s)	353, 689
MwoI	GCNNNNNNNGC	8 cut(s)	287, 346, 1461, 2071, 2192, 2311, 2893, 3149
NciI	CCSGG	1 cut(s)	3763
NcoI	CCATGG	1 cut(s)	3451
NheI	GCTAGC	1 cut(s)	35
NlaIV	GGNNCC	7 cut(s)	1230, 2075, 2196, 2571, 3396, 3943, 3971
NmuCI	GTSAC	7 cut(s)	14, 373, 744, 2608, 3661, 3750, 3778
NsbI	TGCGCA	1 cut(s)	525
NsiI	ATGCAT	4 cut(s)	131, 1381, 2144, 3475
NspI	RCATGY	4 cut(s)	2234, 2934, 3279, 3420
NspV	TTCGAA	3 cut(s)	219, 436, 1499
PaeI	GCATGC	1 cut(s)	2234
PaeR7I	CTCGAG	1 cut(s)	3116
PagI	TCATGA	2 cut(s)	1831, 2260
PaqCI	CACCTGC	1 cut(s)	2594
PctI	GAATGC	2 cut(s)	129, 2525
PdmI	GAANNNNTTC	5 cut(s)	1248, 2256, 2554, 2922, 3399
PflMI	CCANNNNNTGG	3 cut(s)	2389, 2653, 2808
PfoI	TCCNGGA	1 cut(s)	2899
Ppu21I	YACGTR	1 cut(s)	3666
PshAI	GACNNNNGTC	1 cut(s)	3019
PsiI	TTATAA	3 cut(s)	669, 1938, 3311
Psp124BI	GAGCTC	1 cut(s)	984
Psp6I	CCWGG	5 cut(s)	2117, 2234, 2899, 3032, 3296
PspGI	CCWGG	5 cut(s)	2117, 2234, 2899, 3032, 3296
PspN4I	GGNNCC	7 cut(s)	1230, 2075, 2196, 2571, 3396, 3943, 3971
PspPI	GGNCC	2 cut(s)	2121, 3352
PsrI	GAACNNNNNNTAC	2 cut(s)	1464, 1496
PstI	CTGCAG	3 cut(s)	1167, 1794, 2165
PstNI	CAGNNNCTG	2 cut(s)	2311, 3342
PsuI	RGATCY	3 cut(s)	1228, 2865, 3969
PvuII	CAGCTG	2 cut(s)	319, 380
RsaI	GTAC	3 cut(s)	1196, 1365, 3943
RsaNI	GTAC	3 cut(s)	1195, 1364, 3942
RseI	CAYNNNNRTG	3 cut(s)	2557, 3241, 3377
SacI	GAGCTC	1 cut(s)	984
SaqAI	TTAA	8 cut(s)	969, 1002, 1310, 1881, 2595, 2718, 3459, 3756
Sau96I	GGNCC	2 cut(s)	2121, 3352
ScrFI	CCNGG	6 cut(s)	2119, 2236, 2901, 3034, 3298, 3763
SfcI	CTRYAG	8 cut(s)	479, 1163, 1393, 1587, 1790, 1872, 2161, 3977
Sfr274I	CTCGAG	1 cut(s)	3116
SfuI	TTCGAA	3 cut(s)	219, 436, 1499
SinI	GGWCC	1 cut(s)	3352
SlaI	CTCGAG	1 cut(s)	3116
SmiMI	CAYNNNNRTG	3 cut(s)	2557, 3241, 3377
SmlI	CTYRAG	4 cut(s)	89, 858, 2477, 3116
SmoI	CTYRAG	4 cut(s)	89, 858, 2477, 3116
SphI	GCATGC	1 cut(s)	2234
SsiI	CCGC	9 cut(s)	104, 288, 312, 351, 558, 1387, 3420, 3524, 3950
SspI	AATATT	1 cut(s)	796
SstI	GAGCTC	1 cut(s)	984
StyD4I	CCNGG	6 cut(s)	2117, 2234, 2899, 3032, 3296, 3761
StyI	CCWWGG	3 cut(s)	2279, 3390, 3451
TaaI	ACNGT	8 cut(s)	395, 785, 1848, 1934, 2581, 2792, 3137, 3686
TaiI	ACGT	1 cut(s)	3668
TaqI	TCGA	9 cut(s)	219, 360, 436, 876, 1277, 1499, 1767, 2623, 3117
TatI	WGTACW	1 cut(s)	1363
TauI	GCSGC	2 cut(s)	314, 561
Tru1I	TTAA	8 cut(s)	969, 1002, 1310, 1881, 2595, 2718, 3459, 3756
Tru9I	TTAA	8 cut(s)	969, 1002, 1310, 1881, 2595, 2718, 3459, 3756
TscAI	CASTG	8 cut(s)	474, 1059, 1556, 1728, 1962, 3142, 3327, 3691
TseFI	GTSAC	7 cut(s)	14, 373, 744, 2608, 3661, 3750, 3778
Tsp45I	GTSAC	7 cut(s)	14, 373, 744, 2608, 3661, 3750, 3778
TspGWI	ACGGA	4 cut(s)	2641, 2696, 3655, 3812
TspRI	CASTG	8 cut(s)	474, 1059, 1556, 1728, 1962, 3142, 3327, 3691
Van91I	CCANNNNNTGG	3 cut(s)	2389, 2653, 2808
VneI	GTGCAC	2 cut(s)	842, 2033
VpaK11BI	GGWCC	1 cut(s)	3352
XceI	RCATGY	4 cut(s)	2234, 2934, 3279, 3420
XhoI	CTCGAG	1 cut(s)	3116
XmiI	GTMKAC	1 cut(s)	3581
XmnI	GAANNNNTTC	5 cut(s)	1248, 2256, 2554, 2922, 3399
Zsp2I	ATGCAT	4 cut(s)	131, 1381, 2144, 3475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.