FvH4_4g25450

Glutamate--glyoxylate aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27213961 .. 27219238
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25450.t3

Sequence Viewer

Length: 1446 bp
ATGCCACCAAAGGCATTGGATTATGAATCACTGAATGAGAATGTGAAGAAGGTTCAGTATGCTGTTAGAGGCGAGCTATATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATCATTTTCACAAATGTTGGAAATCCTCATGCTCTCGGACAGAAGCCCCTAACTTTCCCTCGCCAGGTGGTTGCTCTATGTCAAGCTCCATTTTTATTAGATGACCCCAATGTAGGACTGCTCTTCCCTGCTGATGCAATTTCAAGGGCTAAACATTACCTCTCAGTTACTTCTGGTGGTCTAGGTGCTTACAGTGATTCTCGAGGTATTCCTGCAATTAGGAAGGAAGTGGCAGAGTTCATTGAAAAACGTGATGGTTATCCAAGTGACCCAGAACTCATATATCTCACTGATGGTGCCAGTAAAGGTGTAATGCAGATCTTAAATGCCATAATCCGTGGTGCAGGGGATGGGGTTTTGGTTCCAGTTCCACAATACCCTCTTTACTCAGCTGCAATATCTCTATTTGGTGGTTCTCTTGTTCCGTATTACCTGGAAGAAACTGCGAACTGGGGTCTTGATGTTACTGATCTTCGCCAGTCAGTCATAACAGCTCGCTCCAAAGGAATTACTGTGAGAGCAATGGTGATTATAAACCCTGGTAACCCTACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGAGAGATAATAAACTTCTGTATCCAAGAAAACCTGGTCTTGCTTGGTGATGAAGTTTATCAGCAGAATGTATACCAGGATGAGCGCCCCTTTATTAGTGCTAGAAAGGTGTTGATGGGTATGGGGCCATTCATAAGCAAGGAGCTCCAGCTTGTTTCTTTCCACTCTGTGTCAAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACAAACATTCCTCCACAGACAGTTGATGAGATATATAAGGTTGCATCAGTGGCACTCAGTCCAAATGTTCCTGCACAAATATTTATGGGCCTTATGGTCAACCCTCCCAAACCTGGAGATATTTCATATGACCAGTTTGCTAGGGAAAGCAAAGAGATCCTTGAATCTCTGAGGAGAAGAGCACGTTTAATGACTGATGGATTCAACAGCTGCAGAAACGTAGTTTGTAATTTCACTGAAGGTGCCATGTATTCCTTCCCTCAAATACGCTTGCCACCAAGAGCAATTCAGGCTGCTAAAAGCGCTGGAAAAGTTCCTGATGTATTCTACTGTCTCAAGCTTTTGGAAGCCACCGGCATTTCCACTGTTCCTGGTTCAGGGTTTGGACAGAAAGATGGGGTCTTCCACTTGAGGACAACCATCTTACCAGCTGAGGAAGACATGCCTGCTATCATGGACAGTTTCAAGAAGTTCAACAATGAGTTCATGGAGCAATATGAAGATGACAGAGGTTATTCAAGGATGTGA

Protein Analysis

482

Amino Acids

53.24

Weight (kDa)

5.99

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 85 - 448 9.5e-37 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccB1I GGYRCC 2 cut(s) 413, 1160
AccI GTMKAC 1 cut(s) 768
AclWI GGATC 1 cut(s) 1069
AcuI CTGAAG 2 cut(s) 83, 1176
AdeI CACNNNGTG 1 cut(s) 865
AfeI AGCGCT 1 cut(s) 1222
AfiI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
AgsI TTSAA 7 cut(s) 261, 362, 1082, 1123, 1384, 1393, 1437
AjnI CCWGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
Alw21I GWGCWC 2 cut(s) 843, 1102
Alw26I GTCTC 1 cut(s) 1256
AlwI GGATC 1 cut(s) 1069
Ama87I CYCGRG 1 cut(s) 318
Aor51HI AGCGCT 1 cut(s) 1222
AoxI GGCC 2 cut(s) 821, 1006
ApeKI GCWGC 3 cut(s) 509, 1128, 1211
AspLEI GCGC 2 cut(s) 783, 1223
AspS9I GGNCC 2 cut(s) 821, 1006
AsuHPI GGTGA 3 cut(s) 655, 755, 896
AvaI CYCGRG 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BanI GGYRCC 2 cut(s) 413, 1160
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 2 cut(s) 1312, 1362
Bbv12I GWGCWC 2 cut(s) 843, 1102
BbvCI CCTCAGC 1 cut(s) 1350
BbvI GCAGC 3 cut(s) 496, 1115, 1198
BccI CCATC 7 cut(s) 365, 404, 461, 805, 1109, 1307, 1346
BciT130I CCWGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
BciVI GTATCC 2 cut(s) 728, 899
BcoDI GTCTC 1 cut(s) 1256
BfaI CTAG 3 cut(s) 299, 798, 1059
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 2 cut(s) 784, 1224
BfuI GTATCC 2 cut(s) 728, 899
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 510, 1129, 1212
BlsI GCNGC 3 cut(s) 511, 1130, 1213
Bme1390I CCNGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 821, 1006
BmiI GGNNCC 4 cut(s) 415, 480, 822, 1162
BmrFI CCNGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 241, 971
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 2 cut(s) 1312, 1362
BpmI CTGGAG 2 cut(s) 827, 1053
Bpu10I CCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 1238, 1348
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 454, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
Bse118I RCCGGY 1 cut(s) 1271
Bse1I ACTGG 6 cut(s) 417, 482, 572, 595, 673, 1051
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
BseDI CCNNGG 2 cut(s) 454, 655
BseGI GGATG 3 cut(s) 472, 781, 1446
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 6 cut(s) 84, 294, 519, 988, 1079, 1341
BseNI ACTGG 6 cut(s) 417, 482, 572, 595, 673, 1051
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 3 cut(s) 496, 1115, 1198
BsgI GTGCAG 2 cut(s) 480, 975
BshFI GGCC 2 cut(s) 823, 1008
BshNI GGYRCC 2 cut(s) 413, 1160
BsiHKAI GWGCWC 2 cut(s) 843, 1102
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 1272
BslI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
BsmAI GTCTC 1 cut(s) 1256
BsnI GGCC 2 cut(s) 823, 1008
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 843, 1102
Bsp143I GATC 4 cut(s) 117, 435, 586, 1074
BspANI GGCC 2 cut(s) 823, 1008
BspCNI CTCAG 6 cut(s) 85, 293, 518, 987, 1080, 1342
BspLI GGNNCC 4 cut(s) 415, 480, 822, 1162
BspMAI CTGCAG 1 cut(s) 1133
BspPI GGATC 1 cut(s) 1069
BspQI GCTCTTC 2 cut(s) 245, 1090
BspT107I GGYRCC 2 cut(s) 413, 1160
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 1271
BsrI ACTGG 6 cut(s) 417, 482, 572, 595, 673, 1051
BssAI RCCGGY 1 cut(s) 1271
BssECI CCNNGG 2 cut(s) 454, 655
BssMI GATC 4 cut(s) 117, 435, 586, 1074
BssNAI GTATAC 1 cut(s) 769
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
Bst4CI ACNGT 6 cut(s) 311, 631, 940, 1250, 1285, 1379
Bst6I CTCTTC 2 cut(s) 245, 1090
BstC8I GCNNGC 4 cut(s) 74, 613, 1190, 1365
BstDEI CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
BstDSI CCRYGG 1 cut(s) 454
BstEII GGTNACC 1 cut(s) 659
BstENI CCTNNNNNAGG 1 cut(s) 1293
BstF5I GGATG 3 cut(s) 472, 781, 1446
BstH2I RGCGCY 2 cut(s) 784, 1224
BstHHI GCGC 2 cut(s) 783, 1223
BstKTI GATC 4 cut(s) 120, 438, 589, 1077
BstMAI GTCTC 1 cut(s) 1256
BstMBI GATC 4 cut(s) 117, 435, 586, 1074
BstMWI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
BstNI CCWGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
BstNSI RCATGY 1 cut(s) 1363
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
BstSFI CTRYAG 1 cut(s) 1129
BstV1I GCAGC 3 cut(s) 496, 1115, 1198
BstV2I GAAGAC 2 cut(s) 1312, 1362
BstX2I RGATCY 2 cut(s) 435, 1074
BstYI RGATCY 2 cut(s) 435, 1074
BstZ17I GTATAC 1 cut(s) 769
BsuI GTATCC 2 cut(s) 728, 899
BsuRI GGCC 2 cut(s) 823, 1008
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 3 cut(s) 472, 781, 1446
BtsIMutI CAGTG 7 cut(s) 29, 316, 405, 680, 972, 1152, 1281
Cac8I GCNNGC 4 cut(s) 74, 613, 1190, 1365
CfoI GCGC 2 cut(s) 783, 1223
Cfr10I RCCGGY 1 cut(s) 1271
Cfr13I GGNCC 2 cut(s) 821, 1006
CsiI ACCWGGT 1 cut(s) 729
CviAII CATG 5 cut(s) 146, 1165, 1360, 1372, 1405
DdeI CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
DpnI GATC 4 cut(s) 119, 437, 588, 1076
DpnII GATC 4 cut(s) 117, 435, 586, 1074
DraIII CACNNNGTG 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 245, 1090
EarI CTCTTC 2 cut(s) 245, 1090
Ecl136II GAGCTC 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 843
Eco47III AGCGCT 1 cut(s) 1222
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 83, 1176
Eco88I CYCGRG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 1293
EcoO65I GGTNACC 1 cut(s) 659
EcoRII CCWGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
EcoT38I GRGCYC 1 cut(s) 843
FaeI CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FatI CATG 5 cut(s) 145, 1164, 1359, 1371, 1404
FauNDI CATATG 1 cut(s) 1045
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 3 cut(s) 510, 1129, 1212
FokI GGATG 2 cut(s) 479, 788
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 510, 1129, 1212
FspBI CTAG 3 cut(s) 299, 798, 1059
GlaI GCGC 2 cut(s) 782, 1222
GluI GCNGC 3 cut(s) 510, 1129, 1212
GsuI CTGGAG 2 cut(s) 827, 1053
HaeII RGCGCY 2 cut(s) 784, 1224
HaeIII GGCC 2 cut(s) 823, 1008
HapII CCGG 1 cut(s) 1272
HhaI GCGC 2 cut(s) 783, 1223
Hin1II CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
Hin6I GCGC 2 cut(s) 781, 1221
HinP1I GCGC 2 cut(s) 781, 1221
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 1256
HinfI GANTC 4 cut(s) 26, 314, 1082, 1119
HpaII CCGG 1 cut(s) 1272
HphI GGTGA 3 cut(s) 655, 755, 896
Hpy166II GTNNAC 3 cut(s) 769, 893, 1018
Hpy188I TCNGA 4 cut(s) 94, 102, 155, 1089
Hpy188III TCNNGA 4 cut(s) 318, 575, 1235, 1384
Hpy8I GTNNAC 3 cut(s) 769, 893, 1018
HpyAV CCTTC 6 cut(s) 43, 97, 101, 334, 1151, 1183
HpyCH4III ACNGT 6 cut(s) 311, 631, 940, 1250, 1285, 1379
HpyCH4IV ACGT 3 cut(s) 367, 1102, 1137
HpyCH4V TGCA 8 cut(s) 254, 332, 433, 461, 512, 962, 992, 1131
HpyF10VI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
HpyF3I CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
HpySE526I ACGT 3 cut(s) 367, 1102, 1137
Hsp92II CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
HspAI GCGC 2 cut(s) 781, 1221
Kzo9I GATC 4 cut(s) 117, 435, 586, 1074
LguI GCTCTTC 2 cut(s) 245, 1090
LmnI GCTCC 5 cut(s) 208, 620, 838, 846, 1408
Lsp1109I GCAGC 3 cut(s) 496, 1115, 1198
LweI GCATC 2 cut(s) 241, 971
MabI ACCWGGT 1 cut(s) 729
MaeI CTAG 3 cut(s) 299, 798, 1059
MaeII ACGT 3 cut(s) 367, 1102, 1137
MaeIII GTNAC 4 cut(s) 283, 383, 580, 659
MalI GATC 4 cut(s) 119, 437, 588, 1076
MboI GATC 4 cut(s) 117, 435, 586, 1074
MflI RGATCY 2 cut(s) 435, 1074
MhlI GDGCHC 2 cut(s) 843, 1102
MluCI AATT 6 cut(s) 255, 333, 624, 691, 1147, 1203
MmeI TCCRAC 1 cut(s) 115
MseI TTAA 3 cut(s) 440, 695, 1106
MspA1I CMGCKG 3 cut(s) 509, 1128, 1349
MspI CCGG 1 cut(s) 1272
MspR9I CCNGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
MvaI CCWGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
MwoI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
NdeI CATATG 1 cut(s) 1045
NdeII GATC 4 cut(s) 117, 435, 586, 1074
NlaIII CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
NlaIV GGNNCC 4 cut(s) 415, 480, 822, 1162
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 1 cut(s) 1363
PaeR7I CTCGAG 1 cut(s) 318
PciSI GCTCTTC 2 cut(s) 245, 1090
PfeI GAWTC 4 cut(s) 26, 314, 1082, 1119
PkrI GCNGC 3 cut(s) 511, 1130, 1213
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 843
Psp6I CCWGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
PspEI GGTNACC 1 cut(s) 659
PspGI CCWGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
PspN4I GGNNCC 4 cut(s) 415, 480, 822, 1162
PspPI GGNCC 2 cut(s) 821, 1006
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 2 cut(s) 435, 1074
PvuII CAGCTG 3 cut(s) 509, 1128, 1349
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 2 cut(s) 245, 1090
SaqAI TTAA 3 cut(s) 440, 695, 1106
SatI GCNGC 3 cut(s) 510, 1129, 1212
Sau3AI GATC 4 cut(s) 117, 435, 586, 1074
Sau96I GGNCC 2 cut(s) 821, 1006
ScrFI CCNGG 7 cut(s) 182, 551, 657, 731, 773, 1032, 1290
SduI GDGCHC 2 cut(s) 843, 1102
SexAI ACCWGGT 1 cut(s) 729
SfaNI GCATC 2 cut(s) 241, 971
SfcI CTRYAG 1 cut(s) 1129
Sfr274I CTCGAG 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 318
SmlI CTYRAG 3 cut(s) 318, 1253, 1327
SmoI CTYRAG 3 cut(s) 318, 1253, 1327
Sse9I AATT 6 cut(s) 255, 333, 624, 691, 1147, 1203
SspI AATATT 1 cut(s) 999
SspMI CTAG 3 cut(s) 299, 798, 1059
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 7 cut(s) 180, 549, 655, 729, 771, 1030, 1288
TaaI ACNGT 6 cut(s) 311, 631, 940, 1250, 1285, 1379
TaiI ACGT 3 cut(s) 370, 1105, 1140
TaqI TCGA 2 cut(s) 85, 319
TasI AATT 6 cut(s) 255, 333, 624, 691, 1147, 1203
TfiI GAWTC 4 cut(s) 26, 314, 1082, 1119
Tru1I TTAA 3 cut(s) 440, 695, 1106
Tru9I TTAA 3 cut(s) 440, 695, 1106
TscAI CASTG 7 cut(s) 36, 316, 412, 680, 972, 1159, 1288
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 509, 1128, 1211
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 7 cut(s) 39, 346, 762, 817, 1032, 1393, 1431
TspGWI ACGGA 2 cut(s) 443, 531
TspRI CASTG 7 cut(s) 36, 316, 412, 680, 972, 1159, 1288
XagI CCTNNNNNAGG 1 cut(s) 1293
XceI RCATGY 1 cut(s) 1363
XhoI CTCGAG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 3 cut(s) 299, 798, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.