Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005109

Physical Location & Seq

Genomic Coordinates Forward (+)

59965447 .. 59970806

Gene Structure 5360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCCACCGAAGGCATTGGACTATGAGTCACTGAATGAGAACGTGAAGAAGGTTCAGTATGCTGTTAGAGGCGAGTTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATCATTTTCACAAATGTTGGGAATCCTCATGCTCTCGGACAGAAGCCTCTAACTTTTCCTCGCCAGGTGGTTGCTCTATGCCAAGCTCCATTTTTATTAGATGACCCCAATGTAGGACTGCTCTTTCCTGCTGATGCAATTTCAAGAGCTAAACATTACCTCTCAGTTACTTCTGGTGGTCTAGGTGCTTACAGTGATTCTCGAGGTATTCCTGCAATTAGGAAGGAAGTGGCAGAGTTCATTGAAAAACGTGATGGTTATCCAAGTGACCCAGAACTCATATTTCTCACTGATGGTGCCAGTAAAGGTGTAATGCAGATCTTAAATGCTGTTATCCGTGGTGCAGGGGATGGGGTTCTGGTTCCAGTTCCACAGTACCCACTTTACTCAGCTGCAATATCTCTATTTGGTGGTTCTCTTGTTCCATATTACCTGGAAGAAACTGCAAACTGGGGTCTCGATGTTACTGATCTTCGCCAGTCAGTTATAATGGCTCGCTCCAAAGGAATTACTGTGAGAGCAATGGTGATTATAAACCCTGGTAACCCTACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGAGAGATAATAAACTTCTGTATCCAAGAAAACCTGGTCTTGCTTGGTGATGAAGTTTATCAGCAGAATGTATACCAGGATGAGCGCCCCTTTATTAGTGCCAGAAAGGTGTTGATGGGTATGGGACCATTCATAAGCAAGGAACTCCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGATATTGGGGTGAATGTGGACAACGTGGTGGATACTTTGAGATGACAAATATTCCTCCACAGGCAGTTGATGAGATATATAAGGTTGCATCAGTGTCACTCAGTCCAAATGTTCCTGCACAAATATTTATGGGCCTTATGGTCAACCCTCCCAAACCTGGAGATATTTCATATGAGCAGTTTGTTAGGGAAAGGTATGCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006950 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009853 GO:0009987 GO:0016020 GO:0016740 GO:0016769 GO:0036293 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047635 GO:0047958 GO:0048046 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

359

Amino Acids

39.59

Weight (kDa)

5.79

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	85 - 334	9e-32	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23310 AT1G23310 AT1G70580 AT1G70580 AT1G70580 AT1G70580
fragaria_vesca	FvH4_4g25450 FvH4_4g25450 FvH4_4g25450
malus_domestica	MD13G1102800.v1.1 MD16G1103000.v1.1
prunus_persica	Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1
pyrus_communis	pycom13g08990 pycom16g08770
rosa_chinensis	RchiOBHm_Chr4g0432761
rosa_laevigata	RLG00000006814
rosa_multiflora	Rmu_sc0012180.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374220
rosa_rugosa	Rorug04G0262300 Rorug04G0262400 Rorug04G0262500 Rorug04G0262600 Rorug04G0262700
rosa_samantha	Rh4BG324900 Rh4CG339900 Rh4DG320100
rosa_wichuraiana	Rw4G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	605, 650
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	768
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	865
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	230, 1031
AgsI	TTSAA	2 cut(s)	261, 362
AhdI	GACNNNNNGTC	1 cut(s)	25
AjnI	CCWGG	6 cut(s)	180, 549, 655, 729, 771, 1030
AluBI	AGCT	7 cut(s)	89, 97, 203, 266, 509, 689, 847
AluI	AGCT	7 cut(s)	89, 97, 203, 266, 509, 689, 847
Alw26I	GTCTC	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	1006
ApeKI	GCWGC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	821, 1006
AsuHPI	GGTGA	3 cut(s)	655, 755, 896
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	821
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanI	GGYRCC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	4 cut(s)	365, 404, 461, 805
BciT130I	CCWGG	6 cut(s)	182, 551, 657, 731, 773, 1032
BciVI	GTATCC	2 cut(s)	728, 899
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	2 cut(s)	728, 899
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	6 cut(s)	182, 551, 657, 731, 773, 1032
Bme18I	GGWCC	1 cut(s)	821
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	821, 1006
BmiI	GGNNCC	3 cut(s)	415, 480, 822
BmrFI	CCNGG	6 cut(s)	182, 551, 657, 731, 773, 1032
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	241, 971
BmuI	ACTGGG	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	827, 1053
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	454, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 1031
Bse1I	ACTGG	5 cut(s)	417, 482, 572, 595, 673
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	6 cut(s)	182, 551, 657, 731, 773, 1032
BseDI	CCNNGG	2 cut(s)	454, 655
BseGI	GGATG	2 cut(s)	472, 781
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	230, 1031
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	84, 294, 519, 988
BseNI	ACTGG	5 cut(s)	417, 482, 572, 595, 673
BseXI	GCAGC	1 cut(s)	496
BsgI	GTGCAG	2 cut(s)	480, 975
BshFI	GGCC	1 cut(s)	1008
BshNI	GGYRCC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	2 cut(s)	230, 1031
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	1008
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	117, 435, 586
BspANI	GGCC	1 cut(s)	1008
BspCNI	CTCAG	4 cut(s)	85, 293, 518, 987
BspLI	GGNNCC	3 cut(s)	415, 480, 822
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	5 cut(s)	417, 482, 572, 595, 673
BssECI	CCNNGG	2 cut(s)	454, 655
BssMI	GATC	3 cut(s)	117, 435, 586
BssNAI	GTATAC	1 cut(s)	769
Bst1107I	GTATAC	1 cut(s)	769
Bst2UI	CCWGG	6 cut(s)	182, 551, 657, 731, 773, 1032
Bst4CI	ACNGT	4 cut(s)	311, 492, 631, 865
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	5 cut(s)	93, 280, 505, 680, 974
BstDSI	CCRYGG	1 cut(s)	454
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	2 cut(s)	472, 781
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	3 cut(s)	120, 438, 589
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	3 cut(s)	117, 435, 586
BstNI	CCWGG	6 cut(s)	182, 551, 657, 731, 773, 1032
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	6 cut(s)	180, 549, 655, 729, 771, 1030
BstV1I	GCAGC	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BstZ17I	GTATAC	1 cut(s)	769
BsuI	GTATCC	2 cut(s)	728, 899
BsuRI	GGCC	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	472, 781
BtsIMutI	CAGTG	6 cut(s)	29, 316, 405, 680, 861, 972
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	1 cut(s)	783
Cfr13I	GGNCC	2 cut(s)	821, 1006
CsiI	ACCWGGT	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	93, 280, 505, 680, 974
DpnI	GATC	3 cut(s)	119, 437, 588
DpnII	GATC	3 cut(s)	117, 435, 586
DraIII	CACNNNGTG	1 cut(s)	865
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	318
Eco91I	GGTNACC	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	659
EcoRII	CCWGG	6 cut(s)	180, 549, 655, 729, 771, 1030
FaeI	CATG	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	479, 788
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	2 cut(s)	827, 1053
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	1 cut(s)	1008
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	3 cut(s)	26, 139, 314
HphI	GGTGA	3 cut(s)	655, 755, 896
Hpy166II	GTNNAC	3 cut(s)	769, 893, 1018
Hpy188I	TCNGA	3 cut(s)	94, 102, 155
Hpy188III	TCNNGA	3 cut(s)	261, 318, 575
Hpy8I	GTNNAC	3 cut(s)	769, 893, 1018
HpyAV	CCTTC	5 cut(s)	4, 43, 97, 101, 334
HpyCH4III	ACNGT	4 cut(s)	311, 492, 631, 865
HpyCH4IV	ACGT	3 cut(s)	42, 367, 898
HpyCH4V	TGCA	8 cut(s)	254, 332, 433, 461, 512, 563, 962, 992
HpyF3I	CTNAG	5 cut(s)	93, 280, 505, 680, 974
HpySE526I	ACGT	3 cut(s)	42, 367, 898
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	117, 435, 586
LmnI	GCTCC	2 cut(s)	208, 620
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	2 cut(s)	241, 971
MabI	ACCWGGT	1 cut(s)	729
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	3 cut(s)	42, 367, 898
MaeIII	GTNAC	6 cut(s)	27, 283, 383, 580, 659, 969
MalI	GATC	3 cut(s)	119, 437, 588
MboI	GATC	3 cut(s)	117, 435, 586
MboII	GAAGA	5 cut(s)	58, 74, 127, 566, 581
MflI	RGATCY	1 cut(s)	435
MluCI	AATT	4 cut(s)	255, 333, 624, 691
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	62, 153, 174, 186, 287, 314, 939, 1032
MseI	TTAA	2 cut(s)	440, 695
MspA1I	CMGCKG	1 cut(s)	509
MspR9I	CCNGG	6 cut(s)	182, 551, 657, 731, 773, 1032
MvaI	CCWGG	6 cut(s)	182, 551, 657, 731, 773, 1032
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	3 cut(s)	117, 435, 586
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	3 cut(s)	415, 480, 822
NmuCI	GTSAC	3 cut(s)	27, 383, 969
PaeR7I	CTCGAG	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	139, 314
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PsiI	TTATAA	2 cut(s)	605, 650
Psp6I	CCWGG	6 cut(s)	180, 549, 655, 729, 771, 1030
PspEI	GGTNACC	1 cut(s)	659
PspGI	CCWGG	6 cut(s)	180, 549, 655, 729, 771, 1030
PspN4I	GGNNCC	3 cut(s)	415, 480, 822
PspPI	GGNCC	2 cut(s)	821, 1006
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	440, 695
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	117, 435, 586
Sau96I	GGNCC	2 cut(s)	821, 1006
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	6 cut(s)	182, 551, 657, 731, 773, 1032
SexAI	ACCWGGT	1 cut(s)	729
SfaNI	GCATC	2 cut(s)	241, 971
Sfr274I	CTCGAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	255, 333, 624, 691
SspI	AATATT	2 cut(s)	925, 999
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	6 cut(s)	180, 549, 655, 729, 771, 1030
TaaI	ACNGT	4 cut(s)	311, 492, 631, 865
TaiI	ACGT	3 cut(s)	45, 370, 901
TaqI	TCGA	3 cut(s)	85, 319, 576
TasI	AATT	4 cut(s)	255, 333, 624, 691
TfiI	GAWTC	2 cut(s)	139, 314
Tru1I	TTAA	2 cut(s)	440, 695
Tru9I	TTAA	2 cut(s)	440, 695
TscAI	CASTG	6 cut(s)	36, 316, 412, 680, 868, 972
TseFI	GTSAC	3 cut(s)	27, 383, 969
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	3 cut(s)	27, 383, 969
TspDTI	ATGAA	4 cut(s)	346, 762, 817, 1032
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	6 cut(s)	36, 316, 412, 680, 868, 972
VpaK11BI	GGWCC	1 cut(s)	821
XhoI	CTCGAG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.