MD13G1102800.v1.1

Glutamate--glyoxylate aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
7337209 .. 7343066
5858 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1102800.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGCCCCTTAAGGCATTGGACTATGAGTCACTGAATGAGAAAGTGAAGAAGGTTCAGTATGCTGTTAGAGGCGAGCTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATTATTTTCACAAATGTTGGGAATCCTCATGCTCTAGGACAGAAGCCACTGACTTTCCCTCGCCAGGTGGTTGCTTTATGCCAAGCTCCATTTCTGTTAGATGACCCTAATGTAGGGCTGCTCTTTCCTGCTGATGCAATTTCAAGAGCTAAACATTATCTTTCAATTACTTCGGGTGGTCTAGGTGCTTATAGTGATTCCCGAGGTATTCCAGGCGTTAGGAAGGAAGTGGCAGAGTTCATTGAGAAACGTGATGGATATCCTAGTGACCCAGAGCTCATATATCTCACCGATGGTGCCAGCAAAGGAGTGATGCAGATCTTGAATGCTATTATCCGTGGTGAAGGGGATGGGATTCTGGTTCCAGTCCCACAGTACCCACTCTATTCGGCTACAATATCTCTGTTTGGCGGTTCTCTTGTTCCATATTACCTAGAGGAAACAGCAAATTGGGGTCTTGATGTTAATAATCTTCGCCAGTCAGTTGCACAGGCTCGCGCGAATGGAATCACTGTAAGAGCGATGGTGATTATAAATCCTGGAAATCCCACTGGTCAGTGTCTTAGTGAAGCTAATTTGAGAGAAATATTGAACTTCTGTTACCGCGAAAGCCTAGTCTTGCTTGGGGACGAAGTTTATCAGCAGAATATATACCAGGACGAGCGCCCCTTTATTAGTGCTAGAAAGGTGTTGATGGGTATGGGGCTACCTGTAAGCAAGGAAGTCCAGCTTGTCTCTTTCCACACCGTCTCCAAAGGATATTGGGGTGAATGTGGACAGCGGGGTGGATACTTTGAGATGACAAACATCCCTCCAAAGACAGTTGATGAGATATATAAGGTTGTATCAATAGCACTCAGTCCAAATGTTCCTGCACAAATATTTATGGGGCTGATGGTCAACCCTCCGAAACCTGGAGACATTTCATATGAGCAGTTTATTAGGGAAAGCAAGGGGATCCTTGAATCTTTGAGGAGAAGAGCACATATTATGACCGATGGATTTAACAGCTGCAGAAATGTCGTTTGCAATTTCACAGAAGGTGCAATGTATTCATTCCCACAAATACGCTTGCCACCAAGAGCGATAGAGGCTGCTAAACGGGCTGGAAAAGTTCCCGACGTTTTCTACTGTCTCAAGCTTTTGGAAGCCACTGGCATTTCCACCGTCCCCGGATCAGGGTTCGGACAGAAAGAAGGGGTTTTCCACTTGAGGACAACCATCTTACCGGCTGAGGAAGACATGCCGGCCATCATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGGATCAATACGAAGATCGGAGAGGCTATTCGAGGATGTAA

Protein Analysis

482

Amino Acids

53.47

Weight (kDa)

6.97

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 88 - 449 1.7e-34 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 3 cut(s) 615, 617, 723
AciI CCGC 3 cut(s) 528, 721, 898
AclWI GGATC 4 cut(s) 1069, 1082, 1300, 1416
AcoI YGGCCR 1 cut(s) 1365
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 5 cut(s) 181, 230, 1031, 1295, 1296
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 7 cut(s) 261, 282, 442, 709, 1082, 1384, 1393
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 5 cut(s) 180, 328, 655, 771, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
Alw21I GWGCWC 2 cut(s) 396, 1102
Alw26I GTCTC 4 cut(s) 856, 871, 1029, 1256
AlwI GGATC 4 cut(s) 1069, 1082, 1300, 1416
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 1 cut(s) 1365
ApeKI GCWGC 3 cut(s) 235, 1128, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 717, 749
AspLEI GCGC 2 cut(s) 617, 783
AsuC2I CCSGG 1 cut(s) 1290
AsuHPI GGTGA 4 cut(s) 397, 470, 655, 896
AvaI CYCGRG 1 cut(s) 318
BamHI GGATCC 1 cut(s) 1074
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 2 cut(s) 396, 1102
BbvCI CCTCAGC 1 cut(s) 1350
BbvI GCAGC 3 cut(s) 222, 1115, 1198
BccI CCATC 9 cut(s) 365, 404, 461, 634, 805, 1006, 1109, 1346, 1376
BcgI CGANNNNNNTGC 2 cut(s) 1120, 1154
BciT130I CCWGG 5 cut(s) 182, 330, 657, 773, 1032
BciVI GTATCC 1 cut(s) 899
BcnI CCSGG 1 cut(s) 1290
BcoDI GTCTC 4 cut(s) 856, 871, 1029, 1256
BfaI CTAG 6 cut(s) 152, 299, 381, 551, 731, 798
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 1 cut(s) 784
BfrI CTTAAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 899
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 236, 1129, 1212
BlsI GCNGC 3 cut(s) 237, 1130, 1213
Bme1390I CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 3 cut(s) 415, 480, 1076
BmrFI CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
BmsI GCATC 2 cut(s) 241, 420
BpiI GAAGAC 1 cut(s) 1362
BpmI CTGGAG 1 cut(s) 1053
Bpu10I CCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 1238, 1348
BpuMI CCSGG 1 cut(s) 1290
BsaBI GATNNNNATC 2 cut(s) 375, 434
BsaJI CCNNGG 3 cut(s) 319, 454, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 230, 1031, 1295, 1296
Bse118I RCCGGY 2 cut(s) 1345, 1363
Bse1I ACTGG 4 cut(s) 482, 595, 673, 1276
Bse3DI GCAATG 1 cut(s) 1170
Bse8I GATNNNNATC 2 cut(s) 375, 434
BseBI CCWGG 5 cut(s) 182, 330, 657, 773, 1032
BseDI CCNNGG 3 cut(s) 319, 454, 1288
BseGI GGATG 3 cut(s) 472, 924, 1446
BseJI GATNNNNATC 2 cut(s) 375, 434
BseLI CCNNNNNNNGG 5 cut(s) 181, 230, 1031, 1295, 1296
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 3 cut(s) 84, 988, 1341
BseNI ACTGG 4 cut(s) 482, 595, 673, 1276
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 3 cut(s) 222, 1115, 1198
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 3 cut(s) 615, 617, 723
BshFI GGCC 1 cut(s) 1367
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 396, 1102
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 3 cut(s) 1290, 1346, 1364
BslFI GGGAC 3 cut(s) 470, 758, 1271
BslI CCNNNNNNNGG 5 cut(s) 181, 230, 1031, 1295, 1296
BsmAI GTCTC 4 cut(s) 856, 871, 1029, 1256
BsmBI CGTCTC 1 cut(s) 871
BsmFI GGGAC 3 cut(s) 470, 758, 1271
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 1367
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 396, 1102
Bsp143I GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
BspACI CCGC 3 cut(s) 528, 721, 898
BspANI GGCC 1 cut(s) 1367
BspCNI CTCAG 3 cut(s) 85, 987, 1342
BspFNI CGCG 3 cut(s) 615, 617, 723
BspLI GGNNCC 3 cut(s) 415, 480, 1076
BspMAI CTGCAG 1 cut(s) 1133
BspPI GGATC 4 cut(s) 1069, 1082, 1300, 1416
BspQI GCTCTTC 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 1170
BsrFI RCCGGY 2 cut(s) 1345, 1363
BsrI ACTGG 4 cut(s) 482, 595, 673, 1276
BssAI RCCGGY 2 cut(s) 1345, 1363
BssECI CCNNGG 3 cut(s) 319, 454, 1288
BssMI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
Bst2UI CCWGG 5 cut(s) 182, 330, 657, 773, 1032
Bst4CI ACNGT 6 cut(s) 492, 631, 865, 940, 1250, 1285
Bst6I CTCTTC 1 cut(s) 1090
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 5 cut(s) 74, 418, 613, 1190, 1365
BstDEI CTNAG 4 cut(s) 93, 680, 974, 1350
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 472, 924, 1446
BstFNI CGCG 3 cut(s) 615, 617, 723
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 2 cut(s) 617, 783
BstKTI GATC 5 cut(s) 438, 1077, 1295, 1411, 1423
BstMAI GTCTC 4 cut(s) 856, 871, 1029, 1256
BstMBI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
BstMWI GCNNNNNNNGC 2 cut(s) 1208, 1220
BstNI CCWGG 5 cut(s) 182, 330, 657, 773, 1032
BstNSI RCATGY 1 cut(s) 1363
BstSCI CCNGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
BstSFI CTRYAG 1 cut(s) 1129
BstUI CGCG 3 cut(s) 615, 617, 723
BstV1I GCAGC 3 cut(s) 222, 1115, 1198
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 2 cut(s) 435, 1074
BstYI RGATCY 2 cut(s) 435, 1074
BsuI GTATCC 1 cut(s) 899
BsuRI GGCC 1 cut(s) 1367
BtgI CCRYGG 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 3 cut(s) 472, 924, 1446
BtsIMutI CAGTG 6 cut(s) 29, 164, 627, 666, 680, 1269
Cac8I GCNNGC 5 cut(s) 74, 418, 613, 1190, 1365
CfoI GCGC 2 cut(s) 617, 783
Cfr10I RCCGGY 2 cut(s) 1345, 1363
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 146, 1360, 1372, 1405
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 93, 680, 974, 1350
DpnI GATC 5 cut(s) 437, 1076, 1294, 1410, 1422
DpnII GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
DriI GACNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 1 cut(s) 1090
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 1090
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco32I GATATC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 5 cut(s) 180, 328, 655, 771, 1030
EcoRV GATATC 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 871
FaeI CATG 4 cut(s) 149, 1363, 1375, 1408
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 3 cut(s) 470, 758, 1271
FatI CATG 4 cut(s) 145, 1359, 1371, 1404
FauI CCCGC 1 cut(s) 891
FauNDI CATATG 1 cut(s) 1045
Fnu4HI GCNGC 3 cut(s) 236, 1129, 1212
FokI GGATG 2 cut(s) 479, 911
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 236, 1129, 1212
FspBI CTAG 6 cut(s) 152, 299, 381, 551, 731, 798
GlaI GCGC 2 cut(s) 616, 782
GluI GCNGC 3 cut(s) 236, 1129, 1212
GsuI CTGGAG 1 cut(s) 1053
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 1 cut(s) 1367
HapII CCGG 3 cut(s) 1290, 1346, 1364
HhaI GCGC 2 cut(s) 617, 783
Hin1II CATG 4 cut(s) 149, 1363, 1375, 1408
Hin6I GCGC 2 cut(s) 615, 781
HinP1I GCGC 2 cut(s) 615, 781
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 1256
HinfI GANTC 6 cut(s) 26, 139, 314, 472, 624, 1082
HpaII CCGG 3 cut(s) 1290, 1346, 1364
HphI GGTGA 4 cut(s) 397, 470, 655, 896
Hpy166II GTNNAC 2 cut(s) 893, 1018
Hpy188I TCNGA 5 cut(s) 94, 102, 1026, 1304, 1425
Hpy188III TCNNGA 6 cut(s) 261, 318, 439, 575, 1235, 1384
Hpy8I GTNNAC 2 cut(s) 893, 1018
Hpy99I CGWCG 2 cut(s) 1241, 1400
HpyAV CCTTC 7 cut(s) 43, 97, 101, 334, 455, 1151, 1307
HpyCH4III ACNGT 6 cut(s) 492, 631, 865, 940, 1250, 1285
HpyCH4IV ACGT 2 cut(s) 367, 1239
HpyCH4V TGCA 7 cut(s) 254, 433, 605, 992, 1131, 1146, 1163
HpyF10VI GCNNNNNNNGC 2 cut(s) 1208, 1220
HpyF3I CTNAG 4 cut(s) 93, 680, 974, 1350
HpySE526I ACGT 2 cut(s) 367, 1239
Hsp92II CATG 4 cut(s) 149, 1363, 1375, 1408
HspAI GCGC 2 cut(s) 615, 781
KroI GCCGGC 1 cut(s) 1363
KroNI GCCGGC 1 cut(s) 1365
Kzo9I GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
LguI GCTCTTC 1 cut(s) 1090
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 3 cut(s) 222, 1115, 1198
LweI GCATC 2 cut(s) 241, 420
MaeI CTAG 6 cut(s) 152, 299, 381, 551, 731, 798
MaeII ACGT 2 cut(s) 367, 1239
MaeIII GTNAC 3 cut(s) 27, 383, 716
MalI GATC 5 cut(s) 437, 1076, 1294, 1410, 1422
MboI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
MboII GAAGA 7 cut(s) 58, 74, 127, 581, 1107, 1367, 1430
MflI RGATCY 2 cut(s) 435, 1074
MhlI GDGCHC 2 cut(s) 396, 1102
MluCI AATT 5 cut(s) 255, 282, 565, 691, 1147
MlyI GAGTC 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 1363
MseI TTAA 3 cut(s) 9, 582, 1122
MspA1I CMGCKG 2 cut(s) 898, 1128
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 3 cut(s) 1290, 1346, 1364
MspR9I CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 5 cut(s) 182, 330, 657, 773, 1032
MvnI CGCG 3 cut(s) 615, 617, 723
MwoI GCNNNNNNNGC 2 cut(s) 1208, 1220
NaeI GCCGGC 1 cut(s) 1365
NciI CCSGG 1 cut(s) 1290
NdeI CATATG 1 cut(s) 1045
NdeII GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
NgoMIV GCCGGC 1 cut(s) 1363
NlaIII CATG 4 cut(s) 149, 1363, 1375, 1408
NlaIV GGNNCC 3 cut(s) 415, 480, 1076
NmuCI GTSAC 2 cut(s) 27, 383
NspI RCATGY 1 cut(s) 1363
PciSI GCTCTTC 1 cut(s) 1090
PctI GAATGC 1 cut(s) 448
PdiI GCCGGC 1 cut(s) 1365
PfeI GAWTC 5 cut(s) 139, 314, 472, 624, 1082
PfoI TCCNGGA 1 cut(s) 655
PkrI GCNGC 3 cut(s) 237, 1130, 1213
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 5 cut(s) 180, 328, 655, 771, 1030
PspGI CCWGG 5 cut(s) 180, 328, 655, 771, 1030
PspN4I GGNNCC 3 cut(s) 415, 480, 1076
PsrI GAACNNNNNNTAC 2 cut(s) 701, 733
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 2 cut(s) 435, 1074
PvuII CAGCTG 1 cut(s) 1128
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 1090
SaqAI TTAA 3 cut(s) 9, 582, 1122
SatI GCNGC 3 cut(s) 236, 1129, 1212
Sau3AI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 6 cut(s) 182, 330, 657, 773, 1032, 1290
SduI GDGCHC 2 cut(s) 396, 1102
SfaNI GCATC 2 cut(s) 241, 420
SfcI CTRYAG 1 cut(s) 1129
SmlI CTYRAG 3 cut(s) 8, 1253, 1327
SmoI CTYRAG 3 cut(s) 8, 1253, 1327
Sse9I AATT 5 cut(s) 255, 282, 565, 691, 1147
SsiI CCGC 3 cut(s) 528, 721, 898
SspI AATATT 2 cut(s) 705, 999
SspMI CTAG 6 cut(s) 152, 299, 381, 551, 731, 798
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 6 cut(s) 180, 328, 655, 771, 1030, 1288
TaaI ACNGT 6 cut(s) 492, 631, 865, 940, 1250, 1285
TaiI ACGT 2 cut(s) 370, 1242
TaqI TCGA 2 cut(s) 85, 1436
TaqII GACCGA 1 cut(s) 1127
TasI AATT 5 cut(s) 255, 282, 565, 691, 1147
TfiI GAWTC 5 cut(s) 139, 314, 472, 624, 1082
Tru1I TTAA 3 cut(s) 9, 582, 1122
Tru9I TTAA 3 cut(s) 9, 582, 1122
TscAI CASTG 6 cut(s) 36, 171, 634, 673, 680, 1276
TseFI GTSAC 2 cut(s) 27, 383
TseI GCWGC 3 cut(s) 235, 1128, 1211
Tsp45I GTSAC 2 cut(s) 27, 383
TspDTI ATGAA 4 cut(s) 346, 1032, 1161, 1393
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 6 cut(s) 36, 171, 634, 673, 680, 1276
Vha464I CTTAAG 1 cut(s) 8
XagI CCTNNNNNAGG 1 cut(s) 228
XceI RCATGY 1 cut(s) 1363
XspI CTAG 6 cut(s) 152, 299, 381, 551, 731, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.