RchiOBHm_Chr4g0432761

Glutamate--glyoxylate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
56838390 .. 56844154
5765 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40133

Sequence Viewer

Length: 1446 bp
ATGCCACCGAAGGCATTGGACTATGAGTCACTGAATGAGAACGTGAAGAAGGTTCAGTATGCTGTTAGAGGCGAGTTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATCATTTTCACAAATGTTGGGAATCCTCATGCTCTCGGACAGAAGCCTCTAACTTTTCCTCGGCAGGTGGTTGCTCTATGCCAAGCTCCATTTTTATTAGATGACCCCAATGTAGGACTGCTTTTTCCTGCTGATGCAATTTCAAGAGCTAAACATTACCTCTCAGTTACTTCTGGTGGTCTAGGTGCTTACAGTGATTCTCGAGGTATTCCTGCAATAAGGAAGGAAGTGGCAGAGTTCATTGAAAAACGTGATGGTTATCCAAGTGACCCAGAACTCATATTTCTCACTGATGGTGCCAGTAAAGGTGTAATGCAGATCTTAAATGCTGTTATCCGTGGTCAAGGGGATGGGGTTCTGGTTCCAGTTCCACAGTACCCGCTTTACTCAGCTGCAATATCTCTATTTGGTGGTTCCCTTGTTCCGTATTACCTGGAAGAAACTGCGAACTGGGGTCTCGATGTTACTGATCTTCGCCAGTCAGTTATAATGGCTCGCTCCAAAGGAATTACTGTGAGAGCAATGGTGATTATAAACCCTGGTAACCCTACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGAGAGATAATAAACTTCTGTATCCAAGAAAACCTGGTCTTGCTTGGTGATGAAGTTTATCAGCAGAATGTATACCAGGATGAGCGCCCCTTTATTAGTGCTAGAAAGGTGTTGATGGGTATGGGACCATTCATAAGCAAGGAACTCCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACAAATATTCCTCCACAGACGGTTGATGAGATATATAAGGTTGCATCAGTGTCACTCAGTCCAAATGTTCCTGCACAAATATTTATGGGCCTTATGGTCAACCCTCCCAAACCTGGAGATATTTCATATGAGCAGTTTGTTAGGGAAAGCAAAGGGATCCTTGAATCTCTGAGGAGAAGAGCACAGTTAATGACTGATGGATTTAACAGCTGCAGAAACGTAGTTTGTAATTTCACAGAAGGTGCCATGTACTCATTCCCTCAAATACGCTTGCCACCAAGAGCAATACAGGCCGCTAAAAGTGCTGGAAAAGTTCCTGATGTTTTCTACTGTCTCAAGCTCTTGGAAGCCACAGGCATTTCCACTGTTCCTGGTTCAGGGTTTGGACAGAAAGATGGGGTCTTCCACTTGAGGACAACCATCTTACCAGCTGAGGAAGACATGCCTGCTATCATGGACAGTTTCAAGAAGTTCAACAATGAGTTCATGGAGCAATATGAGGATGACAGAGGCTATTCAAGGATGTAA

Protein Analysis

481

Amino Acids

53.27

Weight (kDa)

5.98

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 85 - 448 6.4e-36 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 605, 650
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 2 cut(s) 413, 1160
AccI GTMKAC 1 cut(s) 768
AciI CCGC 2 cut(s) 497, 1212
AclWI GGATC 2 cut(s) 1069, 1082
AcuI CTGAAG 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 865
AfaI GTAC 2 cut(s) 494, 1169
AfiI CCNNNNNNNGG 3 cut(s) 230, 1031, 1295
AgsI TTSAA 6 cut(s) 261, 362, 1082, 1384, 1393, 1437
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
Alw21I GWGCWC 1 cut(s) 1102
Alw26I GTCTC 2 cut(s) 578, 1256
AlwI GGATC 2 cut(s) 1069, 1082
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 2 cut(s) 1006, 1209
ApeKI GCWGC 2 cut(s) 509, 1128
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 2 cut(s) 821, 1006
AsuHPI GGTGA 3 cut(s) 655, 755, 896
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 821
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BamHI GGATCC 1 cut(s) 1074
BanI GGYRCC 2 cut(s) 413, 1160
BbsI GAAGAC 2 cut(s) 1312, 1362
Bbv12I GWGCWC 1 cut(s) 1102
BbvCI CCTCAGC 1 cut(s) 1350
BbvI GCAGC 2 cut(s) 496, 1115
BccI CCATC 7 cut(s) 365, 404, 461, 805, 1109, 1307, 1346
BciT130I CCWGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
BciVI GTATCC 2 cut(s) 728, 899
BcoDI GTCTC 2 cut(s) 578, 1256
BfaI CTAG 2 cut(s) 299, 798
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 1 cut(s) 784
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 2 cut(s) 728, 899
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 510, 1129, 1212
BlsI GCNGC 3 cut(s) 511, 1130, 1213
Bme1390I CCNGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
Bme18I GGWCC 1 cut(s) 821
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 821, 1006
BmiI GGNNCC 6 cut(s) 415, 480, 532, 822, 1076, 1162
BmrFI CCNGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 241, 971
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 2 cut(s) 1312, 1362
BpmI CTGGAG 2 cut(s) 827, 1053
Bpu10I CCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 1238, 1348
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 176, 454, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 1031, 1295
Bse1I ACTGG 5 cut(s) 417, 482, 572, 595, 673
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
BseDI CCNNGG 3 cut(s) 176, 454, 655
BseGI GGATG 4 cut(s) 472, 781, 1426, 1446
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 230, 1031, 1295
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 6 cut(s) 84, 294, 519, 988, 1079, 1341
BseNI ACTGG 5 cut(s) 417, 482, 572, 595, 673
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 2 cut(s) 496, 1115
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 2 cut(s) 1008, 1211
BshNI GGYRCC 2 cut(s) 413, 1160
BsiHKAI GWGCWC 1 cut(s) 1102
BsiHKCI CYCGRG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 3 cut(s) 230, 1031, 1295
BsmAI GTCTC 2 cut(s) 578, 1256
BsmFI GGGAC 1 cut(s) 834
BsnI GGCC 2 cut(s) 1008, 1211
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 1102
Bsp143I GATC 4 cut(s) 117, 435, 586, 1074
BspACI CCGC 2 cut(s) 497, 1212
BspANI GGCC 2 cut(s) 1008, 1211
BspCNI CTCAG 6 cut(s) 85, 293, 518, 987, 1080, 1342
BspLI GGNNCC 6 cut(s) 415, 480, 532, 822, 1076, 1162
BspMAI CTGCAG 1 cut(s) 1133
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 2 cut(s) 1069, 1082
BspQI GCTCTTC 1 cut(s) 1090
BspT107I GGYRCC 2 cut(s) 413, 1160
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 5 cut(s) 417, 482, 572, 595, 673
BssECI CCNNGG 3 cut(s) 176, 454, 655
BssMI GATC 4 cut(s) 117, 435, 586, 1074
BssNAI GTATAC 1 cut(s) 769
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
Bst4CI ACNGT 9 cut(s) 311, 492, 631, 865, 940, 1104, 1250, 1285, 1379
Bst6I CTCTTC 1 cut(s) 1090
BstC8I GCNNGC 3 cut(s) 613, 1190, 1365
BstDEI CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
BstDSI CCRYGG 1 cut(s) 454
BstEII GGTNACC 1 cut(s) 659
BstENI CCTNNNNNAGG 1 cut(s) 1293
BstF5I GGATG 4 cut(s) 472, 781, 1426, 1446
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 4 cut(s) 120, 438, 589, 1077
BstMAI GTCTC 2 cut(s) 578, 1256
BstMBI GATC 4 cut(s) 117, 435, 586, 1074
BstMWI GCNNNNNNNGC 2 cut(s) 1208, 1220
BstNI CCWGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
BstNSI RCATGY 1 cut(s) 1363
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
BstSFI CTRYAG 1 cut(s) 1129
BstV1I GCAGC 2 cut(s) 496, 1115
BstV2I GAAGAC 2 cut(s) 1312, 1362
BstX2I RGATCY 2 cut(s) 435, 1074
BstYI RGATCY 2 cut(s) 435, 1074
BstZ17I GTATAC 1 cut(s) 769
BsuI GTATCC 2 cut(s) 728, 899
BsuRI GGCC 2 cut(s) 1008, 1211
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 4 cut(s) 472, 781, 1426, 1446
BtsIMutI CAGTG 7 cut(s) 29, 316, 405, 680, 861, 972, 1281
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 613, 1190, 1365
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 2 cut(s) 821, 1006
CsiI ACCWGGT 1 cut(s) 729
Csp6I GTAC 2 cut(s) 493, 1168
CviAII CATG 5 cut(s) 146, 1165, 1360, 1372, 1405
CviQI GTAC 2 cut(s) 493, 1168
DdeI CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
DpnI GATC 4 cut(s) 119, 437, 588, 1076
DpnII GATC 4 cut(s) 117, 435, 586, 1074
DraIII CACNNNGTG 1 cut(s) 865
DriI GACNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 1090
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 1090
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 821
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 659
EcoNI CCTNNNNNAGG 1 cut(s) 1293
EcoO65I GGTNACC 1 cut(s) 659
EcoRII CCWGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
FaeI CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 1 cut(s) 834
FatI CATG 5 cut(s) 145, 1164, 1359, 1371, 1404
FauI CCCGC 1 cut(s) 504
FauNDI CATATG 1 cut(s) 1045
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 3 cut(s) 510, 1129, 1212
FokI GGATG 3 cut(s) 479, 788, 1433
Fsp4HI GCNGC 3 cut(s) 510, 1129, 1212
FspBI CTAG 2 cut(s) 299, 798
GlaI GCGC 1 cut(s) 782
GluI GCNGC 3 cut(s) 510, 1129, 1212
GsuI CTGGAG 2 cut(s) 827, 1053
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 2 cut(s) 1008, 1211
HhaI GCGC 1 cut(s) 783
Hin1II CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HinfI GANTC 4 cut(s) 26, 139, 314, 1082
HphI GGTGA 3 cut(s) 655, 755, 896
Hpy166II GTNNAC 3 cut(s) 769, 893, 1018
Hpy188I TCNGA 4 cut(s) 94, 102, 155, 1089
Hpy188III TCNNGA 5 cut(s) 261, 318, 575, 1235, 1384
Hpy8I GTNNAC 3 cut(s) 769, 893, 1018
HpyAV CCTTC 6 cut(s) 4, 43, 97, 101, 334, 1151
HpyCH4III ACNGT 9 cut(s) 311, 492, 631, 865, 940, 1104, 1250, 1285, 1379
HpyCH4IV ACGT 3 cut(s) 42, 367, 1137
HpyCH4V TGCA 7 cut(s) 254, 332, 433, 512, 962, 992, 1131
HpyF10VI GCNNNNNNNGC 2 cut(s) 1208, 1220
HpyF3I CTNAG 7 cut(s) 93, 280, 505, 680, 974, 1088, 1350
HpySE526I ACGT 3 cut(s) 42, 367, 1137
Hsp92II CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
HspAI GCGC 1 cut(s) 781
Kzo9I GATC 4 cut(s) 117, 435, 586, 1074
LguI GCTCTTC 1 cut(s) 1090
LmnI GCTCC 3 cut(s) 208, 620, 1408
Lsp1109I GCAGC 2 cut(s) 496, 1115
LweI GCATC 2 cut(s) 241, 971
MabI ACCWGGT 1 cut(s) 729
MaeI CTAG 2 cut(s) 299, 798
MaeII ACGT 3 cut(s) 42, 367, 1137
MaeIII GTNAC 6 cut(s) 27, 283, 383, 580, 659, 969
MalI GATC 4 cut(s) 119, 437, 588, 1076
MboI GATC 4 cut(s) 117, 435, 586, 1074
MboII GAAGA 8 cut(s) 58, 74, 127, 566, 581, 1107, 1312, 1367
MflI RGATCY 2 cut(s) 435, 1074
MhlI GDGCHC 1 cut(s) 1102
MluCI AATT 4 cut(s) 255, 624, 691, 1147
MlyI GAGTC 1 cut(s) 35
MseI TTAA 4 cut(s) 440, 695, 1106, 1122
MspA1I CMGCKG 3 cut(s) 509, 1128, 1349
MspR9I CCNGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
MvaI CCWGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
MwoI GCNNNNNNNGC 2 cut(s) 1208, 1220
NdeI CATATG 1 cut(s) 1045
NdeII GATC 4 cut(s) 117, 435, 586, 1074
NlaIII CATG 5 cut(s) 149, 1168, 1363, 1375, 1408
NlaIV GGNNCC 6 cut(s) 415, 480, 532, 822, 1076, 1162
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 3 cut(s) 27, 383, 969
NspI RCATGY 1 cut(s) 1363
PaeR7I CTCGAG 1 cut(s) 318
PaqCI CACCTGC 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 1090
PfeI GAWTC 3 cut(s) 139, 314, 1082
PkrI GCNGC 3 cut(s) 511, 1130, 1213
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 2 cut(s) 605, 650
Psp6I CCWGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
PspEI GGTNACC 1 cut(s) 659
PspGI CCWGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
PspN4I GGNNCC 6 cut(s) 415, 480, 532, 822, 1076, 1162
PspPI GGNCC 2 cut(s) 821, 1006
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 2 cut(s) 435, 1074
PvuII CAGCTG 3 cut(s) 509, 1128, 1349
RsaI GTAC 2 cut(s) 494, 1169
RsaNI GTAC 2 cut(s) 493, 1168
SapI GCTCTTC 1 cut(s) 1090
SaqAI TTAA 4 cut(s) 440, 695, 1106, 1122
SatI GCNGC 3 cut(s) 510, 1129, 1212
Sau3AI GATC 4 cut(s) 117, 435, 586, 1074
Sau96I GGNCC 2 cut(s) 821, 1006
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 6 cut(s) 551, 657, 731, 773, 1032, 1290
SduI GDGCHC 1 cut(s) 1102
SexAI ACCWGGT 1 cut(s) 729
SfaNI GCATC 2 cut(s) 241, 971
SfcI CTRYAG 1 cut(s) 1129
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 821
SlaI CTCGAG 1 cut(s) 318
SmlI CTYRAG 3 cut(s) 318, 1253, 1327
SmoI CTYRAG 3 cut(s) 318, 1253, 1327
Sse9I AATT 4 cut(s) 255, 624, 691, 1147
SsiI CCGC 2 cut(s) 497, 1212
SspI AATATT 2 cut(s) 925, 999
SspMI CTAG 2 cut(s) 299, 798
StyD4I CCNGG 6 cut(s) 549, 655, 729, 771, 1030, 1288
TaaI ACNGT 9 cut(s) 311, 492, 631, 865, 940, 1104, 1250, 1285, 1379
TaiI ACGT 3 cut(s) 45, 370, 1140
TaqI TCGA 3 cut(s) 85, 319, 576
TasI AATT 4 cut(s) 255, 624, 691, 1147
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 3 cut(s) 139, 314, 1082
Tru1I TTAA 4 cut(s) 440, 695, 1106, 1122
Tru9I TTAA 4 cut(s) 440, 695, 1106, 1122
TscAI CASTG 7 cut(s) 36, 316, 412, 680, 868, 972, 1288
TseFI GTSAC 3 cut(s) 27, 383, 969
TseI GCWGC 2 cut(s) 509, 1128
Tsp45I GTSAC 3 cut(s) 27, 383, 969
TspDTI ATGAA 5 cut(s) 346, 762, 817, 1032, 1393
TspGWI ACGGA 2 cut(s) 443, 531
TspRI CASTG 7 cut(s) 36, 316, 412, 680, 868, 972, 1288
VpaK11BI GGWCC 1 cut(s) 821
XagI CCTNNNNNAGG 1 cut(s) 1293
XceI RCATGY 1 cut(s) 1363
XhoI CTCGAG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 2 cut(s) 299, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.