Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005109

Physical Location & Seq

Genomic Coordinates Forward (+)

25660690 .. 25665997

Gene Structure 5308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G243000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGCCCCCTAAGGCATTGGACTACGAGTCACTGAATGAGAATGTGAAGAAGGTTCAATATGCTGTTAGAGGCGAGTTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATTATTTTCACAAATGTTGGAAACCCTCATGCTCTAGGACAGAAGCCACTGTCTTTCCCTCGCCAGGTGGTTGCTTTATGCCAAGCTCCATTCCTATTAGATGACCCTAATGTAGGACTGATCTTCCCTGCTGATGCAATTTCAAGAGCTAAACATTATCTTTCAATTACTACTGGTGGTCTAGGTGCTTATAGTGATTCCCGAGGTATTCCGGGTGTTAGGAAGGAAGTGGCAGAGTTCATTGAGAGACGTGATGGATATCCAAGTGACCCAGAACTCATATATCTCACTGATGGTGCCAGCAAAGGTGTGATGCAGATCTTGAATACCATCATCCGTGGTGAAGGAGATGGGGTTCTGGTTCCAGTCCCACAATACCCACTCTATTCGGCTGCAATAACTCTGTTTGGTGGTTCTCTTGTTCCGTATTACCTTGAGGAAACAGCAAATTGGGGTCTTGATCTTAATAATCTTCGCCAGTCAGTTGCACAGGCTCGCTCTAAAGGAATTACTGTGAGAGCAATGGTGATTATAAACCCCGGCAACCCCACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGAGAAATATTGAACTTCTGTTTCCACGAAGGCCTAGTCTTGCTCGGGGACGAAGTTTATCAGCAGAATATATACCAGGATGAACGCCCCTTTATTAGTGCAAGAAAGGTGTTGATGGGTATGGGGCTACCCATAAGCAAGGAAGTCCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGATACTGGGGTGAATGTGGGCAGCGTGGTGGGTACTTTGAGATGACAAACATTCCTCCACAGACGGTTGATGAGATATATAAGGTTGCATCAATTGCACTCAGTCCCAATGTTCCTGCACAAATATTTATGGGGCTAATGGTCAACCCTCCCAAACCTGGAGATATTTCGTATGAGCAGTTTGTTAGGGAAAGCAAGGGGATCCTTGAATCTCTGAGGAGAAGAGCAAGGATAATGACTGATGGATTTAACAACTGCAGAAATATTGTTTGTAACTTCACAGAAGGTGCCATGTATTCCTTCCCTCAAATACGCTTGCCACCAAGAGCAATAGAGGCTGCTAAAAGAGCTGGAAAAGTTGCGGATGTTTTCTACTGTCTCAAGCTTTTGGAAGCCACTGGCATTTCCACTGTCCCCGGATCAGGGTTTGGACAGAAAGAAGGGGTCTTCCATTTGAGGACAACCATCTTACCAGCTGAGGAAGACATGCCTGCCATCATGGATAGTTTCAAGAAGTTCAATGATGAGTTCATGGAGCAATATGAAGATCACAGAGGCTATTCGAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006950 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009853 GO:0009987 GO:0016020 GO:0016740 GO:0016769 GO:0036293 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047635 GO:0047958 GO:0048046 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

482

Amino Acids

53.44

Weight (kDa)

6.37

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23310 AT1G23310 AT1G70580 AT1G70580 AT1G70580 AT1G70580
fragaria_vesca	FvH4_4g25450 FvH4_4g25450 FvH4_4g25450
malus_domestica	MD13G1102800.v1.1 MD16G1103000.v1.1
prunus_persica	Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1 Prupe.1G243000_v2.0.a1
pyrus_communis	pycom13g08990 pycom16g08770
rosa_chinensis	RchiOBHm_Chr4g0432761
rosa_laevigata	RLG00000006814
rosa_multiflora	Rmu_sc0012180.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374220
rosa_rugosa	Rorug04G0262300 Rorug04G0262400 Rorug04G0262500 Rorug04G0262600 Rorug04G0262700
rosa_samantha	Rh4BG324900 Rh4CG339900 Rh4DG320100
rosa_wichuraiana	Rw4G027560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	2 cut(s)	413, 1160
AciI	CCGC	1 cut(s)	1235
AclWI	GGATC	3 cut(s)	1069, 1082, 1300
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	865
AfaI	GTAC	1 cut(s)	908
AfiI	CCNNNNNNNGG	5 cut(s)	181, 230, 1031, 1295, 1296
AgsI	TTSAA	8 cut(s)	56, 261, 282, 442, 709, 1082, 1384, 1393
AhdI	GACNNNNNGTC	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	180, 771, 1030
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	9 cut(s)	89, 97, 203, 266, 689, 847, 1223, 1258, 1349
AluI	AGCT	9 cut(s)	89, 97, 203, 266, 689, 847, 1223, 1258, 1349
Alw26I	GTCTC	2 cut(s)	358, 1256
AlwI	GGATC	3 cut(s)	1069, 1082, 1300
Ama87I	CYCGRG	2 cut(s)	318, 740
AoxI	GGCC	1 cut(s)	727
ApeKI	GCWGC	3 cut(s)	509, 895, 1211
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
AsuC2I	CCSGG	3 cut(s)	330, 657, 1290
AsuHPI	GGTGA	3 cut(s)	470, 655, 896
AvaI	CYCGRG	2 cut(s)	318, 740
AxyI	CCTNAGG	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	868, 901
BamHI	GGATCC	1 cut(s)	1074
BanI	GGYRCC	2 cut(s)	413, 1160
BbsI	GAAGAC	2 cut(s)	1312, 1362
BbvCI	CCTCAGC	1 cut(s)	1350
BbvI	GCAGC	3 cut(s)	496, 907, 1198
BccI	CCATC	8 cut(s)	365, 404, 455, 461, 805, 1109, 1346, 1376
BciT130I	CCWGG	3 cut(s)	182, 773, 1032
BciVI	GTATCC	1 cut(s)	869
BcnI	CCSGG	3 cut(s)	330, 657, 1290
BcoDI	GTCTC	2 cut(s)	358, 1256
BfaI	CTAG	3 cut(s)	152, 299, 731
BfmI	CTRYAG	1 cut(s)	1129
BfuI	GTATCC	1 cut(s)	869
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	3 cut(s)	510, 896, 1212
BlsI	GCNGC	3 cut(s)	511, 897, 1213
Bme1390I	CCNGG	6 cut(s)	182, 330, 657, 773, 1032, 1290
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmeT110I	CYCGRG	2 cut(s)	318, 740
BmgBI	CACGTC	1 cut(s)	368
BmiI	GGNNCC	4 cut(s)	415, 480, 1076, 1162
BmrFI	CCNGG	6 cut(s)	182, 330, 657, 773, 1032, 1290
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	3 cut(s)	241, 420, 971
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	2 cut(s)	1312, 1362
BpmI	CTGGAG	1 cut(s)	1053
Bpu10I	CCTNAGC	1 cut(s)	1350
BpuEI	CTTGAG	2 cut(s)	572, 1238
BpuMI	CCSGG	3 cut(s)	330, 657, 1290
BsaBI	GATNNNNATC	2 cut(s)	375, 434
BsaJI	CCNNGG	4 cut(s)	319, 454, 655, 1288
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 230, 1031, 1295, 1296
Bse1I	ACTGG	6 cut(s)	295, 482, 595, 673, 884, 1276
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	2 cut(s)	375, 434
BseBI	CCWGG	3 cut(s)	182, 773, 1032
BseDI	CCNNGG	4 cut(s)	319, 454, 655, 1288
BseGI	GGATG	4 cut(s)	450, 781, 1243, 1446
BseJI	GATNNNNATC	2 cut(s)	375, 434
BseLI	CCNNNNNNNGG	5 cut(s)	181, 230, 1031, 1295, 1296
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	84, 988, 1079, 1341
BseNI	ACTGG	6 cut(s)	295, 482, 595, 673, 884, 1276
BseRI	GAGGAG	1 cut(s)	1105
BseXI	GCAGC	3 cut(s)	496, 907, 1198
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	1 cut(s)	729
BshNI	GGYRCC	2 cut(s)	413, 1160
BsiHKCI	CYCGRG	2 cut(s)	318, 740
BsiSI	CCGG	3 cut(s)	329, 657, 1290
BslFI	GGGAC	4 cut(s)	470, 758, 963, 1271
BslI	CCNNNNNNNGG	5 cut(s)	181, 230, 1031, 1295, 1296
BsmAI	GTCTC	2 cut(s)	358, 1256
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	4 cut(s)	470, 758, 963, 1271
BsnI	GGCC	1 cut(s)	729
BsoBI	CYCGRG	2 cut(s)	318, 740
Bsp143I	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
BspACI	CCGC	1 cut(s)	1235
BspANI	GGCC	1 cut(s)	729
BspCNI	CTCAG	4 cut(s)	85, 987, 1080, 1342
BspLI	GGNNCC	4 cut(s)	415, 480, 1076, 1162
BspMAI	CTGCAG	1 cut(s)	1133
BspPI	GGATC	3 cut(s)	1069, 1082, 1300
BspQI	GCTCTTC	1 cut(s)	1090
BspT107I	GGYRCC	2 cut(s)	413, 1160
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	6 cut(s)	295, 482, 595, 673, 884, 1276
BssECI	CCNNGG	4 cut(s)	319, 454, 655, 1288
BssMI	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
Bst2UI	CCWGG	3 cut(s)	182, 773, 1032
Bst4CI	ACNGT	6 cut(s)	168, 631, 865, 940, 1250, 1285
Bst6I	CTCTTC	1 cut(s)	1090
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstC8I	GCNNGC	4 cut(s)	418, 613, 1190, 1365
BstDEI	CTNAG	6 cut(s)	9, 93, 680, 974, 1088, 1350
BstDSI	CCRYGG	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	450, 781, 1243, 1446
BstKTI	GATC	6 cut(s)	240, 438, 580, 1077, 1295, 1423
BstMAI	GTCTC	2 cut(s)	358, 1256
BstMBI	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
BstMWI	GCNNNNNNNGC	3 cut(s)	968, 1208, 1220
BstNI	CCWGG	3 cut(s)	182, 773, 1032
BstNSI	RCATGY	1 cut(s)	1363
BstSCI	CCNGG	6 cut(s)	180, 328, 655, 771, 1030, 1288
BstSFI	CTRYAG	1 cut(s)	1129
BstV1I	GCAGC	3 cut(s)	496, 907, 1198
BstV2I	GAAGAC	2 cut(s)	1312, 1362
BstX2I	RGATCY	2 cut(s)	435, 1074
BstYI	RGATCY	2 cut(s)	435, 1074
Bsu36I	CCTNAGG	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	1 cut(s)	729
BtgI	CCRYGG	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	4 cut(s)	450, 781, 1243, 1446
BtsIMutI	CAGTG	8 cut(s)	29, 164, 405, 666, 680, 861, 1269, 1281
Cac8I	GCNNGC	4 cut(s)	418, 613, 1190, 1365
Csp6I	GTAC	1 cut(s)	907
CviAII	CATG	5 cut(s)	146, 1165, 1360, 1372, 1405
CviQI	GTAC	1 cut(s)	907
DdeI	CTNAG	6 cut(s)	9, 93, 680, 974, 1088, 1350
DpnI	GATC	6 cut(s)	239, 437, 579, 1076, 1294, 1422
DpnII	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
DraIII	CACNNNGTG	1 cut(s)	865
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	1090
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	1090
Eco147I	AGGCCT	1 cut(s)	729
Eco32I	GATATC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	9
Eco88I	CYCGRG	2 cut(s)	318, 740
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRII	CCWGG	3 cut(s)	180, 771, 1030
EcoRV	GATATC	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	5 cut(s)	149, 1168, 1363, 1375, 1408
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	4 cut(s)	470, 758, 963, 1271
FatI	CATG	5 cut(s)	145, 1164, 1359, 1371, 1404
Fnu4HI	GCNGC	3 cut(s)	510, 896, 1212
FokI	GGATG	3 cut(s)	437, 788, 1250
Fsp4HI	GCNGC	3 cut(s)	510, 896, 1212
FspBI	CTAG	3 cut(s)	152, 299, 731
GluI	GCNGC	3 cut(s)	510, 896, 1212
GsuI	CTGGAG	1 cut(s)	1053
HaeIII	GGCC	1 cut(s)	729
HapII	CCGG	3 cut(s)	329, 657, 1290
Hin1II	CATG	5 cut(s)	149, 1168, 1363, 1375, 1408
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HindIII	AAGCTT	1 cut(s)	1256
HinfI	GANTC	3 cut(s)	26, 314, 1082
HpaII	CCGG	3 cut(s)	329, 657, 1290
HphI	GGTGA	3 cut(s)	470, 655, 896
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	3 cut(s)	94, 102, 1089
Hpy188III	TCNNGA	5 cut(s)	261, 318, 439, 575, 1384
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	9 cut(s)	43, 97, 101, 334, 455, 719, 1151, 1183, 1307
HpyCH4III	ACNGT	6 cut(s)	168, 631, 865, 940, 1250, 1285
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	9 cut(s)	254, 433, 512, 605, 797, 962, 971, 992, 1131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	968, 1208, 1220
HpyF3I	CTNAG	6 cut(s)	9, 93, 680, 974, 1088, 1350
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	149, 1168, 1363, 1375, 1408
Kzo9I	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
LguI	GCTCTTC	1 cut(s)	1090
LmnI	GCTCC	2 cut(s)	208, 1408
Lsp1109I	GCAGC	3 cut(s)	496, 907, 1198
LweI	GCATC	3 cut(s)	241, 420, 971
MaeI	CTAG	3 cut(s)	152, 299, 731
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	3 cut(s)	27, 383, 1145
MalI	GATC	6 cut(s)	239, 437, 579, 1076, 1294, 1422
MboI	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
MboII	GAAGA	9 cut(s)	58, 74, 127, 232, 581, 1107, 1312, 1367, 1430
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	2 cut(s)	435, 1074
MluCI	AATT	6 cut(s)	255, 282, 565, 624, 691, 966
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	115
MseI	TTAA	3 cut(s)	582, 695, 1122
MspA1I	CMGCKG	1 cut(s)	1349
MspI	CCGG	3 cut(s)	329, 657, 1290
MspR9I	CCNGG	6 cut(s)	182, 330, 657, 773, 1032, 1290
MunI	CAATTG	1 cut(s)	966
MvaI	CCWGG	3 cut(s)	182, 773, 1032
MwoI	GCNNNNNNNGC	3 cut(s)	968, 1208, 1220
NciI	CCSGG	3 cut(s)	330, 657, 1290
NdeII	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
NlaIII	CATG	5 cut(s)	149, 1168, 1363, 1375, 1408
NlaIV	GGNNCC	4 cut(s)	415, 480, 1076, 1162
NmuCI	GTSAC	2 cut(s)	27, 383
NspI	RCATGY	1 cut(s)	1363
PceI	AGGCCT	1 cut(s)	729
PciSI	GCTCTTC	1 cut(s)	1090
PfeI	GAWTC	2 cut(s)	314, 1082
PkrI	GCNGC	3 cut(s)	511, 897, 1213
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	180, 771, 1030
PspGI	CCWGG	3 cut(s)	180, 771, 1030
PspN4I	GGNNCC	4 cut(s)	415, 480, 1076, 1162
PstI	CTGCAG	1 cut(s)	1133
PsuI	RGATCY	2 cut(s)	435, 1074
PvuII	CAGCTG	1 cut(s)	1349
RsaI	GTAC	1 cut(s)	908
RsaNI	GTAC	1 cut(s)	907
SapI	GCTCTTC	1 cut(s)	1090
SaqAI	TTAA	3 cut(s)	582, 695, 1122
SatI	GCNGC	3 cut(s)	510, 896, 1212
Sau3AI	GATC	6 cut(s)	237, 435, 577, 1074, 1292, 1420
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	6 cut(s)	182, 330, 657, 773, 1032, 1290
SfaNI	GCATC	3 cut(s)	241, 420, 971
SfcI	CTRYAG	1 cut(s)	1129
SmlI	CTYRAG	2 cut(s)	551, 1253
SmoI	CTYRAG	2 cut(s)	551, 1253
Sse9I	AATT	6 cut(s)	255, 282, 565, 624, 691, 966
SseBI	AGGCCT	1 cut(s)	729
SsiI	CCGC	1 cut(s)	1235
SspI	AATATT	3 cut(s)	705, 999, 1138
SspMI	CTAG	3 cut(s)	152, 299, 731
StuI	AGGCCT	1 cut(s)	729
StyD4I	CCNGG	6 cut(s)	180, 328, 655, 771, 1030, 1288
TaaI	ACNGT	6 cut(s)	168, 631, 865, 940, 1250, 1285
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	85, 1436
TasI	AATT	6 cut(s)	255, 282, 565, 624, 691, 966
TfiI	GAWTC	2 cut(s)	314, 1082
Tru1I	TTAA	3 cut(s)	582, 695, 1122
Tru9I	TTAA	3 cut(s)	582, 695, 1122
TscAI	CASTG	8 cut(s)	36, 171, 412, 673, 680, 868, 1276, 1288
TseFI	GTSAC	2 cut(s)	27, 383
TseI	GCWGC	3 cut(s)	509, 895, 1211
Tsp45I	GTSAC	2 cut(s)	27, 383
TspDTI	ATGAA	4 cut(s)	346, 792, 1393, 1431
TspGWI	ACGGA	2 cut(s)	443, 531
TspRI	CASTG	8 cut(s)	36, 171, 412, 673, 680, 868, 1276, 1288
XagI	CCTNNNNNAGG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	1363
XspI	CTAG	3 cut(s)	152, 299, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.