AT1G23790

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011337
Physical Location & Seq
Forward (+)
8409945 .. 8412079
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23790.1

Sequence Viewer

Length: 1557 bp
ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTTAAACCGACCGGAGAACACAGAAGCTCGTTATTACAAGTCACAGATATCGTCCCTATTGATCTTGACGAGAAGAATCTTTTACCGAAACAAGGCTTCTTCATAAAAGTCTCTGATTCTTCTCATTCAATCTACGTTAGCCTTCCTTCAGATCAAGACGACGACGTTTTAAGCAACAAGATGCAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGACACCTGTTCCGATCATCAAAGGTGCTAGACCGATTCCCGGACGACATCCTTTACTTGGAACTCCTGAGCCATTGATGAGTACAAGAGGAAAGATTGAGAGTTCGAGACCTAGAAGAGGTTCTTGGGGTCAAAACGGTGACGTTTCGTCTCCGTTTGTGTTAAAGCCTGCACCTTTGGATTTTGATCAGTGTACGCCGGCGAAACATAGGCTTGGTACGGGGAGATTTATGGCGGCGTCTCCGAATGTTATGACTAGAGGGAGGTCACCTGGTGGTGTTAGATGTTCTTATGGTGGAGGGCTTTTGTCGAAAATGGCGGAGAGTCCTGCTGCAATGATGAGGAAGAGCTGTGTTGTTCCGCCGAGTTCGAAGTTTCCGAGAAGTAAAAGTGTTTGCGATAGAGAGACAATGGCAAAGAACTCTGTTCTTTTTAGTCCTTTTAAATCCTCTGCAAAGAAAAACGATTCACCGCCTCCGAGTGTACGTACTAGAAGAGCAACAGCAGCTTCCTTGTTGGAAGATGAAAGAGAGGCTCCAAAGTCTACTTCAAAGTATAGTAAGCTGGAAAAACCTGAGAAGAGTTTGAGTCTACCAGGAAGACTTAGCACACTGAGCAAGGAAGCTATGCAACAGCGAGAGACGGCTCAAAAGATAGCTCTTCAGGCATTGAGAGAAGCTACAACAACAGAAACAGTAGTTCGTCATCTCAAGACATTTGCAAATCTGAGCAAATCAGCAAAAGCTGATTGTCCAGCTGCTTGCTTCGACAAGTTCTTGGAGTTTCACAGCCAGATATCTGAAACCATGAACGAAATTGCTTCTATCGAAGCAGCTGCTTCACCTGCTACTACTGAGAAAAAATCTGAGGATGGATCATTAATACTACACGAAATCCAGCATAACTCTATTGATCAGGAGAAAACAACATCAAAGAGAAGAATTCTCCTGAAGCAGCAGCAAAAGAGATCAAACGATGAGAACAAGAACCCCGCAGTTTCTCTTTCCGGATTAGGAAACACGGCGAGGTTGGTTAAAGAGATAGAGAAAGAAGCTGCAAATTGGTTCATGGAGTTTATAGAAAAGGCTCTGGAGAAAGGGATGAAGAAATGTAAAGGCACAAGTGATGCAGATGTTAAGAAGGTTCCACAGTCTCTGATTCTCAAAGTTGTAAACTGGGTGGAAGAAGAACATTCTGCTGATAACACGAAACGACCAGTTCATCCAAAAGCATCACATATCACTAGAAAGCTCAGAATCAAGTTGAAGAATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

518

Amino Acids

56.95

Weight (kDa)

9.68

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 120 4.9e-45 Plant protein of unknown function (DUF936)
DUF6857 PF21647 290 - 382 2.4e-18 Domain of unknown function (DUF6857)
DUF6857 PF21647 395 - 496 3.4e-07 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23790 AT1G70340
fragaria_vesca FvH4_4g34410 FvH4_4g34410
malus_domestica MD13G1091800.v1.1 MD16G1092400.v1.1
prunus_persica Prupe.1G254000_v2.0.a1
pyrus_communis pycom13g07970 pycom16g07880
rosa_chinensis RchiOBHm_Chr4g0443831
rosa_laevigata RLG00000005884
rosa_multiflora Rmu_sc0005632.1_g000006 Rmu_sc0026423.1_g000001
rosa_roxburghii Rroxscaffold_5G00384400
rosa_rugosa Rorug04G0347700
rosa_samantha Rh4AG407900 Rh4BG418900 Rh4CG433000 Rh4DG414100
rosa_wichuraiana Rw4G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1132
Acc36I ACCTGC 1 cut(s) 1132
AccI GTMKAC 2 cut(s) 824, 871
AccIII TCCGGA 1 cut(s) 1286
AciI CCGC 6 cut(s) 5, 515, 599, 641, 752, 1272
AclWI GGATC 2 cut(s) 269, 1162
AcsI RAATTY 1 cut(s) 1221
AcuI CTGAAG 3 cut(s) 189, 926, 1250
AcyI GRCGYC 1 cut(s) 518
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 5 cut(s) 364, 475, 499, 765, 769
AfiI CCNNNNNNNGG 4 cut(s) 149, 320, 338, 398
AgsI TTSAA 4 cut(s) 29, 186, 831, 1546
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 3 cut(s) 277, 550, 874
AjuI GAANNNNNNNTTGG 4 cut(s) 388, 420, 811, 843
Alw26I GTCTC 7 cut(s) 172, 382, 435, 525, 680, 914, 1437
AlwI GGATC 2 cut(s) 269, 1162
AlwNI CAGNNNCTG 1 cut(s) 1435
Aor13HI TCCGGA 1 cut(s) 1286
ApeKI GCWGC 8 cut(s) 611, 785, 1037, 1112, 1115, 1234, 1237, 1334
ApoI RAATTY 1 cut(s) 1221
AseI ATTAAT 1 cut(s) 1160
Asp700I GAANNNNTTC 1 cut(s) 400
AsuC2I CCSGG 2 cut(s) 18, 321
AsuHPI GGTGA 4 cut(s) 431, 540, 741, 1113
AsuII TTCGAA 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 886
BbvI GCAGC 8 cut(s) 598, 797, 1024, 1102, 1124, 1246, 1249, 1321
BccI CCATC 1 cut(s) 1145
BceAI ACGGC 2 cut(s) 939, 1317
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BciT130I CCWGG 3 cut(s) 279, 552, 876
BclI TGATCA 2 cut(s) 466, 1192
BcnI CCSGG 2 cut(s) 18, 321
BcoDI GTCTC 7 cut(s) 172, 382, 435, 525, 680, 914, 1437
BfaI CTAG 5 cut(s) 309, 393, 537, 771, 1524
BfuAI ACCTGC 1 cut(s) 1132
Bme1390I CCNGG 5 cut(s) 18, 279, 321, 552, 876
BmeRI GACNNNNNGTC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 816, 1425
BmrFI CCNGG 5 cut(s) 18, 279, 321, 552, 876
BmrI ACTGGG 1 cut(s) 1465
BmsI GCATC 3 cut(s) 228, 1396, 1520
BmuI ACTGGG 1 cut(s) 1465
BpiI GAAGAC 1 cut(s) 886
BpmI CTGGAG 1 cut(s) 1391
Bpu10I CCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 974
BpuMI CCSGG 2 cut(s) 18, 321
BsaAI YACGTR 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 16, 278
BsaWI WCCGGW 3 cut(s) 53, 68, 1286
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 320, 338, 398
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 2 cut(s) 1460, 1496
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 1286
BseBI CCWGG 3 cut(s) 279, 552, 876
BseDI CCNNGG 2 cut(s) 16, 278
BseGI GGATG 4 cut(s) 328, 1156, 1386, 1501
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 4 cut(s) 149, 320, 338, 398
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 7 cut(s) 339, 846, 884, 998, 1125, 1137, 1546
BseNI ACTGG 2 cut(s) 1460, 1496
BseXI GCAGC 8 cut(s) 598, 797, 1024, 1102, 1124, 1246, 1249, 1321
BsgI GTGCAG 1 cut(s) 435
Bsh1285I CGRYCG 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 6 cut(s) 18, 54, 69, 321, 479, 1287
BslFI GGGAC 2 cut(s) 95, 295
BslI CCNNNNNNNGG 4 cut(s) 149, 320, 338, 398
BsmAI GTCTC 7 cut(s) 172, 382, 435, 525, 680, 914, 1437
BsmBI CGTCTC 3 cut(s) 435, 525, 914
BsmFI GGGAC 2 cut(s) 95, 295
Bso31I GGTCTC 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 650
Bsp13I TCCGGA 1 cut(s) 1286
Bsp143I GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
BspACI CCGC 6 cut(s) 5, 515, 599, 641, 752, 1272
BspCNI CTCAG 7 cut(s) 340, 847, 885, 999, 1126, 1138, 1545
BspEI TCCGGA 1 cut(s) 1286
BspLI GGNNCC 2 cut(s) 816, 1425
BspMI ACCTGC 1 cut(s) 1132
BspPI GGATC 2 cut(s) 269, 1162
BspQI GCTCTTC 3 cut(s) 620, 769, 945
BspT104I TTCGAA 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 2 cut(s) 1460, 1496
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 16, 278
BssMI GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
BssNI GRCGYC 1 cut(s) 518
Bst2UI CCWGG 3 cut(s) 279, 552, 876
Bst4CI ACNGT 4 cut(s) 44, 419, 976, 1431
Bst6I CTCTTC 5 cut(s) 391, 620, 769, 854, 945
BstACI GRCGYC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 767
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 3 cut(s) 450, 480, 1042
BstDEI CTNAG 9 cut(s) 348, 855, 884, 893, 1007, 1134, 1146, 1532, 1554
BstEII GGTNACC 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 4 cut(s) 328, 1156, 1386, 1501
BstKTI GATC 9 cut(s) 121, 211, 268, 277, 297, 469, 1157, 1195, 1250
BstMAI GTCTC 7 cut(s) 172, 382, 435, 525, 680, 914, 1437
BstMBI GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 5 cut(s) 11, 785, 894, 944, 1124
BstNI CCWGG 3 cut(s) 279, 552, 876
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 5 cut(s) 16, 277, 319, 550, 874
BstSNI TACGTA 1 cut(s) 767
BstV1I GCAGC 8 cut(s) 598, 797, 1024, 1102, 1124, 1246, 1249, 1321
BstV2I GAAGAC 1 cut(s) 886
BtsCI GGATG 4 cut(s) 328, 1156, 1386, 1501
BtsIMutI CAGTG 2 cut(s) 476, 890
BveI ACCTGC 1 cut(s) 1132
Cac8I GCNNGC 3 cut(s) 450, 480, 1042
CaiI CAGNNNCTG 1 cut(s) 1435
Cfr10I RCCGGY 1 cut(s) 478
CseI GACGC 1 cut(s) 507
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 5 cut(s) 363, 474, 498, 764, 768
CviAII CATG 2 cut(s) 1087, 1348
CviQI GTAC 5 cut(s) 363, 474, 498, 764, 768
DdeI CTNAG 9 cut(s) 348, 855, 884, 893, 1007, 1134, 1146, 1532, 1554
DpnI GATC 9 cut(s) 120, 210, 267, 276, 296, 468, 1156, 1194, 1249
DpnII GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
DraI TTTAAA 1 cut(s) 724
DraIII CACNNNGTG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 427
Eam1104I CTCTTC 5 cut(s) 391, 620, 769, 854, 945
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 5 cut(s) 391, 620, 769, 854, 945
EciI GGCGGA 2 cut(s) 614, 630
Eco105I TACGTA 1 cut(s) 767
Eco31I GGTCTC 1 cut(s) 382
Eco32I GATATC 2 cut(s) 106, 1077
Eco57I CTGAAG 3 cut(s) 189, 926, 1250
Eco91I GGTNACC 1 cut(s) 546
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 1221
EcoRII CCWGG 3 cut(s) 277, 550, 874
EcoRV GATATC 2 cut(s) 106, 1077
Esp3I CGTCTC 3 cut(s) 435, 525, 914
FaeI CATG 2 cut(s) 1090, 1351
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FaqI GGGAC 2 cut(s) 95, 295
FatI CATG 2 cut(s) 1086, 1347
FauI CCCGC 1 cut(s) 1279
FbaI TGATCA 2 cut(s) 466, 1192
FblI GTMKAC 2 cut(s) 824, 871
FokI GGATG 4 cut(s) 315, 1163, 1393, 1488
FspBI CTAG 5 cut(s) 309, 393, 537, 771, 1524
GsuI CTGGAG 1 cut(s) 1391
HapII CCGG 6 cut(s) 18, 54, 69, 321, 479, 1287
HgaI GACGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 2 cut(s) 1090, 1351
HpaII CCGG 6 cut(s) 18, 54, 69, 321, 479, 1287
HphI GGTGA 4 cut(s) 431, 540, 741, 1113
Hpy166II GTNNAC 5 cut(s) 474, 764, 825, 872, 1453
Hpy188III TCNNGA 9 cut(s) 122, 212, 347, 387, 991, 1196, 1228, 1287, 1370
Hpy8I GTNNAC 5 cut(s) 474, 764, 825, 872, 1453
Hpy99I CGWCG 3 cut(s) 44, 221, 224
HpyAV CCTTC 4 cut(s) 35, 209, 213, 1414
HpyCH4III ACNGT 4 cut(s) 44, 419, 976, 1431
HpyCH4IV ACGT 5 cut(s) 192, 222, 261, 423, 766
HpyCH4V TGCA 8 cut(s) 241, 452, 614, 734, 910, 1001, 1337, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 785, 894, 944, 1124
HpyF3I CTNAG 9 cut(s) 348, 855, 884, 893, 1007, 1134, 1146, 1532, 1554
HpySE526I ACGT 5 cut(s) 192, 222, 261, 423, 766
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 2 cut(s) 1090, 1351
Kpn2I TCCGGA 1 cut(s) 1286
KroI GCCGGC 1 cut(s) 478
KroNI GCCGGC 1 cut(s) 480
Ksp22I TGATCA 2 cut(s) 466, 1192
Kzo9I GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
LguI GCTCTTC 3 cut(s) 620, 769, 945
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 8 cut(s) 598, 797, 1024, 1102, 1124, 1246, 1249, 1321
LweI GCATC 3 cut(s) 228, 1396, 1520
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 5 cut(s) 309, 393, 537, 771, 1524
MaeII ACGT 5 cut(s) 192, 222, 261, 423, 766
MaeIII GTNAC 3 cut(s) 97, 419, 546
MalI GATC 9 cut(s) 120, 210, 267, 276, 296, 468, 1156, 1194, 1249
MboI GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
MluCI AATT 3 cut(s) 1095, 1221, 1339
MlyI GAGTC 2 cut(s) 613, 877
MmeI TCCRAC 1 cut(s) 777
MreI CGCCGGCG 1 cut(s) 478
MroI TCCGGA 1 cut(s) 1286
MroNI GCCGGC 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 400
MseI TTAA 7 cut(s) 60, 227, 443, 723, 1160, 1314, 1416
MspA1I CMGCKG 2 cut(s) 1037, 1115
MspI CCGG 6 cut(s) 18, 54, 69, 321, 479, 1287
MspR9I CCNGG 5 cut(s) 18, 279, 321, 552, 876
MvaI CCWGG 3 cut(s) 279, 552, 876
MwoI GCNNNNNNNGC 5 cut(s) 11, 785, 894, 944, 1124
NaeI GCCGGC 1 cut(s) 480
NciI CCSGG 2 cut(s) 18, 321
NdeII GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
NgoMIV GCCGGC 1 cut(s) 478
NlaIII CATG 2 cut(s) 1090, 1351
NlaIV GGNNCC 2 cut(s) 816, 1425
NmeAIII GCCGAG 1 cut(s) 669
NmuCI GTSAC 3 cut(s) 97, 419, 546
NspV TTCGAA 1 cut(s) 650
PaqCI CACCTGC 1 cut(s) 1132
PciSI GCTCTTC 3 cut(s) 620, 769, 945
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PdiI GCCGGC 1 cut(s) 480
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 8 cut(s) 21, 133, 173, 316, 746, 1438, 1536, 1549
PfoI TCCNGGA 1 cut(s) 319
PleI GAGTC 2 cut(s) 612, 876
PpsI GAGTC 2 cut(s) 612, 876
Ppu21I YACGTR 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 1160
Psp6I CCWGG 3 cut(s) 277, 550, 874
PspEI GGTNACC 1 cut(s) 546
PspGI CCWGG 3 cut(s) 277, 550, 874
PspN4I GGNNCC 2 cut(s) 816, 1425
PstNI CAGNNNCTG 1 cut(s) 1435
PvuII CAGCTG 2 cut(s) 1037, 1115
RsaI GTAC 5 cut(s) 364, 475, 499, 765, 769
RsaNI GTAC 5 cut(s) 363, 474, 498, 764, 768
SapI GCTCTTC 3 cut(s) 620, 769, 945
SaqAI TTAA 7 cut(s) 60, 227, 443, 723, 1160, 1314, 1416
Sau3AI GATC 9 cut(s) 118, 208, 265, 274, 294, 466, 1154, 1192, 1247
SchI GAGTC 2 cut(s) 613, 877
ScrFI CCNGG 5 cut(s) 18, 279, 321, 552, 876
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 3 cut(s) 228, 1396, 1520
SfuI TTCGAA 1 cut(s) 650
SgrAI CRCCGGYG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SnaBI TACGTA 1 cut(s) 767
Sse9I AATT 3 cut(s) 1095, 1221, 1339
SsiI CCGC 6 cut(s) 5, 515, 599, 641, 752, 1272
SspMI CTAG 5 cut(s) 309, 393, 537, 771, 1524
StyD4I CCNGG 5 cut(s) 16, 277, 319, 550, 874
TaaI ACNGT 4 cut(s) 44, 419, 976, 1431
TaiI ACGT 5 cut(s) 195, 225, 264, 426, 769
TaqI TCGA 6 cut(s) 39, 386, 590, 650, 1047, 1107
TaqII GACCGA 1 cut(s) 328
TasI AATT 3 cut(s) 1095, 1221, 1339
TatI WGTACW 1 cut(s) 362
TauI GCSGC 2 cut(s) 8, 518
TfiI GAWTC 8 cut(s) 21, 133, 173, 316, 746, 1438, 1536, 1549
Tru1I TTAA 7 cut(s) 60, 227, 443, 723, 1160, 1314, 1416
Tru9I TTAA 7 cut(s) 60, 227, 443, 723, 1160, 1314, 1416
TscAI CASTG 2 cut(s) 476, 897
TseFI GTSAC 3 cut(s) 97, 419, 546
TseI GCWGC 8 cut(s) 611, 785, 1037, 1112, 1115, 1234, 1237, 1334
Tsp45I GTSAC 3 cut(s) 97, 419, 546
TspDTI ATGAA 7 cut(s) 62, 148, 819, 1103, 1336, 1397, 1490
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 2 cut(s) 476, 897
VspI ATTAAT 1 cut(s) 1160
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 1 cut(s) 1221
XmiI GTMKAC 2 cut(s) 824, 871
XmnI GAANNNNTTC 1 cut(s) 400
XspI CTAG 5 cut(s) 309, 393, 537, 771, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.