AT1G70340

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011337
Physical Location & Seq
Reverse (-)
26503961 .. 26506672
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70340.1

Sequence Viewer

Length: 1533 bp
ATGGCAGCTTTGGCACCTGGAATTCTTCAAAAGCTAATCCAAGGTATGAAAACAGGAATTAAACCAACTAGAGAGCACCGAAGCTCTATGTTACAGGTCACAGATATCGTTCCCATTGATCTCGACGAGAAGTCTCTGGAGCCGAAACAAGGGTTTCTCATCAAAATCTCTGATTCCTCTCACTCGATCTACGTCTCTCTCCCTTCGGATCAAGACGACGTCGTTCTCAGCAATAAGTTGCAGTTGGGTCAGTTTATCTACGTTGATCGGCTCGAACCTGGATCCCCTGTTCCTGTCATTAAAGGGGCAAAACCCATACCTGGCCGGCACCCCTTGCTTGGGACGCCGGAGACATTGGTGGTTCCGAAAGAAAGAACTGATCAAGAGATTGGGTCGAAGCCTAGAAGAGGATCTTGGGGACAAAACGTCGACTTTTCTTCGTCTCCGTTTGTTGTGAAACCAATGGCGTTGGAGTTTGACCATTCCACGCCGGCGAAGAGGTCTGTTTCAGCTAGATTTGCAGCGTCTCCGATCAGAAGAGGTGGAGTGAGATGCTCTTTTGGTGGAGGGGTTTTGGGGAAATTGGAAGGAGAGAGTCCGGCGACGGCGATGCTAAGGAAGAGTTGTTTTGTTTCGTCGGCTTCGAAGTTTCCGAGAAGTAGAAGTGTTTGTGACAGACAGGCCAAAAAGAACAATGCTTCTCTTTTTAGTCCCTTCAAATCCTCTCTAGAGGCTCAAGAAGATGTTGTTCCCTTGTCTACCTCGAAGAAGATAAAACCCGAGAAAGATACCAATTTATCAGGAAGGCTCAACATACTAAGCAAGGAAGCAACTCAGCTTCGGGAGGTAGCTCAGAAAGTTGCCCTTCAGGCATTGCGAGAAGCTACAATCACGGAAATTGTTGTTCGTCATACCAAGACGTTCACCAATCTGAGTAAATCAGCAAAAGCTGATTGCCCTGCGGTGTGCTTTGAGAAGTTCATGGAGTTTCACCAGCAGATGGCACAAACCATTGGCGAACTCACTTCCATTGAAGTAGCTGCTACTCCAGATGCTGAGAACAAGTCACAGAACATAAACGCAAGAACCGAAAATCAGAAACCAACAGAAGAAGGGTCTTCTTCGATCCTGCATGAAATCGCTTATAATTCTATTGATCAGGAGAAAAGGAGATCAAAGAGACGGATTGTCCTGAAGCAGCAGAGCGAAGGGAAGACAGTGAGATCAAATGATGAGAACAAGAACCCAGCTTCTGGCGGTATAAGCAACACGATTAGGTTAGCAAAGGAGATCGAGGATGAAGCTGCAAACTGGTTCATGGAGTTCATCGAAATAGCTCTGGAGAAAGGTATGAAGAAATCTAGAGGCCCTGATGATGCAGACGTTAAGAAGGTTCCGCAATCTCTGATTCTCGGGGTTTTAAACTGGATTGAAGTCGAACAGTCTGATAGCAACAACAACAAGAGACGCAGAGTCCATCCAAAAGCATCAAAGATCACTAGAAAGCTCAGAATTAAACTGAAGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

510

Amino Acids

56.39

Weight (kDa)

9.65

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 120 3.8e-44 Plant protein of unknown function (DUF936)
DUF6857 PF21647 265 - 369 2.1e-14 Domain of unknown function (DUF6857)
DUF6857 PF21647 358 - 480 2.4e-06 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23790 AT1G70340
fragaria_vesca FvH4_4g34410 FvH4_4g34410
malus_domestica MD13G1091800.v1.1 MD16G1092400.v1.1
prunus_persica Prupe.1G254000_v2.0.a1
pyrus_communis pycom13g07970 pycom16g07880
rosa_chinensis RchiOBHm_Chr4g0443831
rosa_laevigata RLG00000005884
rosa_multiflora Rmu_sc0005632.1_g000006 Rmu_sc0026423.1_g000001
rosa_roxburghii Rroxscaffold_5G00384400
rosa_rugosa Rorug04G0347700
rosa_samantha Rh4AG407900 Rh4BG418900 Rh4CG433000 Rh4DG414100
rosa_wichuraiana Rw4G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1146
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 2 cut(s) 13, 327
AccB7I CCANNNNNTGG 2 cut(s) 1000, 1253
AccI GTMKAC 2 cut(s) 429, 758
AciI CCGC 3 cut(s) 962, 1257, 1397
AclWI GGATC 5 cut(s) 216, 276, 289, 418, 1120
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 2 cut(s) 851, 1214
AcyI GRCGYC 2 cut(s) 219, 344
AfiI CCNNNNNNNGG 7 cut(s) 149, 320, 338, 339, 407, 1000, 1253
AgsI TTSAA 4 cut(s) 29, 718, 1034, 1433
AhdI GACNNNNNGTC 4 cut(s) 130, 425, 1187, 1472
AjnI CCWGG 3 cut(s) 16, 277, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 7 cut(s) 138, 199, 344, 447, 531, 1174, 1459
AlwI GGATC 5 cut(s) 216, 276, 289, 418, 1120
AlwNI CAGNNNCTG 2 cut(s) 1055, 1253
Ama87I CYCGRG 2 cut(s) 779, 1412
AoxI GGCC 3 cut(s) 322, 681, 1366
ApeKI GCWGC 5 cut(s) 5, 521, 1040, 1198, 1304
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 1367
AsuHPI GGTGA 2 cut(s) 916, 983
AsuII TTCGAA 1 cut(s) 644
AvaI CYCGRG 2 cut(s) 779, 1412
BamHI GGATCC 1 cut(s) 281
BanI GGYRCC 2 cut(s) 13, 327
BbsI GAAGAC 2 cut(s) 1110, 1220
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 17, 533, 1027, 1210, 1291
BccI CCATC 2 cut(s) 994, 1485
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 3 cut(s) 18, 279, 321
BclI TGATCA 2 cut(s) 379, 1156
BcoDI GTCTC 7 cut(s) 138, 199, 344, 447, 531, 1174, 1459
BfaI CTAG 6 cut(s) 69, 402, 513, 728, 1362, 1500
BglI GCCNNNNNGGC 1 cut(s) 869
BisI GCNGC 5 cut(s) 6, 522, 1041, 1199, 1305
BlsI GCNGC 5 cut(s) 7, 523, 1042, 1200, 1306
Bme1390I CCNGG 3 cut(s) 18, 279, 321
BmeRI GACNNNNNGTC 4 cut(s) 130, 425, 1187, 1472
BmeT110I CYCGRG 2 cut(s) 779, 1412
BmgT120I GGNCC 1 cut(s) 1367
BmiI GGNNCC 6 cut(s) 15, 141, 283, 329, 363, 1395
BmrFI CCNGG 3 cut(s) 18, 279, 321
BmsI GCATC 5 cut(s) 542, 600, 1042, 1366, 1496
BpiI GAAGAC 2 cut(s) 1110, 1220
BpmI CTGGAG 3 cut(s) 158, 1032, 1361
Bpu10I CCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 720
BsaHI GRCGYC 2 cut(s) 219, 344
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 7 cut(s) 149, 320, 338, 339, 407, 1000, 1253
Bse118I RCCGGY 2 cut(s) 324, 490
Bse1I ACTGG 2 cut(s) 1316, 1430
Bse3DI GCAATG 1 cut(s) 872
BseBI CCWGG 3 cut(s) 18, 279, 321
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 1303, 1477
BseLI CCNNNNNNNGG 7 cut(s) 149, 320, 338, 339, 407, 1000, 1253
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 6 cut(s) 241, 848, 866, 923, 1047, 1522
BseNI ACTGG 2 cut(s) 1316, 1430
BseXI GCAGC 5 cut(s) 17, 533, 1027, 1210, 1291
BseYI CCCAGC 1 cut(s) 1246
BshFI GGCC 3 cut(s) 324, 683, 1368
BshNI GGYRCC 2 cut(s) 13, 327
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 779, 1412
BsiSI CCGG 4 cut(s) 325, 347, 491, 599
BslFI GGGAC 3 cut(s) 355, 432, 696
BslI CCNNNNNNNGG 7 cut(s) 149, 320, 338, 339, 407, 1000, 1253
BsmAI GTCTC 7 cut(s) 138, 199, 344, 447, 531, 1174, 1459
BsmBI CGTCTC 5 cut(s) 199, 447, 531, 1174, 1459
BsmFI GGGAC 3 cut(s) 355, 432, 696
BsnI GGCC 3 cut(s) 324, 683, 1368
BsoBI CYCGRG 2 cut(s) 779, 1412
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 78
BspACI CCGC 3 cut(s) 962, 1257, 1397
BspANI GGCC 3 cut(s) 324, 683, 1368
BspCNI CTCAG 6 cut(s) 240, 847, 865, 924, 1048, 1521
BspLI GGNNCC 6 cut(s) 15, 141, 283, 329, 363, 1395
BspPI GGATC 5 cut(s) 216, 276, 289, 418, 1120
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 2 cut(s) 13, 327
BsrDI GCAATG 1 cut(s) 872
BsrFI RCCGGY 2 cut(s) 324, 490
BsrI ACTGG 2 cut(s) 1316, 1430
BssAI RCCGGY 2 cut(s) 324, 490
BssECI CCNNGG 1 cut(s) 40
BssNI GRCGYC 2 cut(s) 219, 344
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 3 cut(s) 18, 279, 321
Bst4CI ACNGT 2 cut(s) 1219, 1443
Bst6I CTCTTC 4 cut(s) 400, 491, 532, 614
BstACI GRCGYC 2 cut(s) 219, 344
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 326, 492
BstDEI CTNAG 8 cut(s) 227, 614, 818, 834, 852, 932, 1056, 1508
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 1303, 1477
BstMAI GTCTC 7 cut(s) 138, 199, 344, 447, 531, 1174, 1459
BstMWI GCNNNNNNNGC 6 cut(s) 11, 334, 343, 518, 869, 1263
BstNI CCWGG 3 cut(s) 18, 279, 321
BstSCI CCNGG 3 cut(s) 16, 277, 319
BstV1I GCAGC 5 cut(s) 17, 533, 1027, 1210, 1291
BstV2I GAAGAC 2 cut(s) 1110, 1220
BstX2I RGATCY 2 cut(s) 281, 410
BstYI RGATCY 2 cut(s) 281, 410
BsuRI GGCC 3 cut(s) 324, 683, 1368
BtgZI GCGATG 1 cut(s) 623
BtsCI GGATG 2 cut(s) 1303, 1477
BtsIMutI CAGTG 1 cut(s) 1224
Cac8I GCNNGC 2 cut(s) 326, 492
CaiI CAGNNNCTG 2 cut(s) 1055, 1253
Cfr10I RCCGGY 2 cut(s) 324, 490
Cfr13I GGNCC 1 cut(s) 1367
CseI GACGC 3 cut(s) 352, 513, 1476
CviAII CATG 3 cut(s) 982, 1133, 1318
DdeI CTNAG 8 cut(s) 227, 614, 818, 834, 852, 932, 1056, 1508
DraI TTTAAA 1 cut(s) 1422
DriI GACNNNNNGTC 4 cut(s) 130, 425, 1187, 1472
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 4 cut(s) 400, 491, 532, 614
Eam1105I GACNNNNNGTC 4 cut(s) 130, 425, 1187, 1472
EarI CTCTTC 4 cut(s) 400, 491, 532, 614
Eco130I CCWWGG 1 cut(s) 40
Eco32I GATATC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 851, 1214
Eco88I CYCGRG 2 cut(s) 779, 1412
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 1367
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 3 cut(s) 16, 277, 319
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
Esp3I CGTCTC 5 cut(s) 199, 447, 531, 1174, 1459
FaeI CATG 3 cut(s) 985, 1136, 1321
FalI AAGNNNNNCTT 4 cut(s) 397, 429, 849, 881
FaqI GGGAC 3 cut(s) 355, 432, 696
FatI CATG 3 cut(s) 981, 1132, 1317
FbaI TGATCA 2 cut(s) 379, 1156
FblI GTMKAC 2 cut(s) 429, 758
Fnu4HI GCNGC 5 cut(s) 6, 522, 1041, 1199, 1305
FokI GGATG 2 cut(s) 1310, 1464
Fsp4HI GCNGC 5 cut(s) 6, 522, 1041, 1199, 1305
FspBI CTAG 6 cut(s) 69, 402, 513, 728, 1362, 1500
GluI GCNGC 5 cut(s) 6, 522, 1041, 1199, 1305
GsaI CCCAGC 1 cut(s) 1250
GsuI CTGGAG 3 cut(s) 158, 1032, 1361
HaeIII GGCC 3 cut(s) 324, 683, 1368
HapII CCGG 4 cut(s) 325, 347, 491, 599
HgaI GACGC 3 cut(s) 352, 513, 1476
Hin1I GRCGYC 2 cut(s) 219, 344
Hin1II CATG 3 cut(s) 985, 1136, 1321
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 5 cut(s) 173, 595, 1408, 1473, 1525
HpaII CCGG 4 cut(s) 325, 347, 491, 599
HphI GGTGA 2 cut(s) 916, 983
Hpy166II GTNNAC 3 cut(s) 430, 759, 924
Hpy8I GTNNAC 3 cut(s) 430, 759, 924
Hpy99I CGWCG 6 cut(s) 128, 221, 224, 431, 607, 640
HpyAV CCTTC 8 cut(s) 213, 581, 724, 798, 875, 1106, 1202, 1384
HpyCH4III ACNGT 2 cut(s) 1219, 1443
HpyCH4IV ACGT 6 cut(s) 192, 219, 261, 426, 920, 1383
HpyCH4V TGCA 5 cut(s) 241, 521, 1132, 1307, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 334, 343, 518, 869, 1263
HpyF3I CTNAG 8 cut(s) 227, 614, 818, 834, 852, 932, 1056, 1508
HpySE526I ACGT 6 cut(s) 192, 219, 261, 426, 920, 1383
Hsp92I GRCGYC 2 cut(s) 219, 344
Hsp92II CATG 3 cut(s) 985, 1136, 1321
KroI GCCGGC 2 cut(s) 324, 490
KroNI GCCGGC 2 cut(s) 326, 492
Ksp22I TGATCA 2 cut(s) 379, 1156
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 5 cut(s) 17, 533, 1027, 1210, 1291
LweI GCATC 5 cut(s) 542, 600, 1042, 1366, 1496
MaeI CTAG 6 cut(s) 69, 402, 513, 728, 1362, 1500
MaeII ACGT 6 cut(s) 192, 219, 261, 426, 920, 1383
MaeIII GTNAC 4 cut(s) 90, 97, 671, 1065
MflI RGATCY 2 cut(s) 281, 410
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 7 cut(s) 21, 57, 581, 793, 897, 1147, 1512
MlyI GAGTC 2 cut(s) 604, 1482
MmeI TCCRAC 1 cut(s) 450
MreI CGCCGGCG 1 cut(s) 490
MroNI GCCGGC 2 cut(s) 324, 490
MseI TTAA 5 cut(s) 60, 300, 1386, 1421, 1515
MspI CCGG 4 cut(s) 325, 347, 491, 599
MspR9I CCNGG 3 cut(s) 18, 279, 321
MvaI CCWGG 3 cut(s) 18, 279, 321
MwoI GCNNNNNNNGC 6 cut(s) 11, 334, 343, 518, 869, 1263
NaeI GCCGGC 2 cut(s) 326, 492
NgoMIV GCCGGC 2 cut(s) 324, 490
NlaIII CATG 3 cut(s) 985, 1136, 1321
NlaIV GGNNCC 6 cut(s) 15, 141, 283, 329, 363, 1395
NmuCI GTSAC 3 cut(s) 97, 671, 1065
NspV TTCGAA 1 cut(s) 644
PcsI WCGNNNNNNNCGW 3 cut(s) 641, 650, 1086
PdiI GCCGGC 2 cut(s) 326, 492
PfeI GAWTC 3 cut(s) 173, 1408, 1525
PflFI GACNNNGTC 1 cut(s) 218
PflMI CCANNNNNTGG 2 cut(s) 1000, 1253
PkrI GCNGC 5 cut(s) 7, 523, 1042, 1200, 1306
PleI GAGTC 2 cut(s) 603, 1481
PpsI GAGTC 2 cut(s) 603, 1481
PsiI TTATAA 1 cut(s) 1146
Psp6I CCWGG 3 cut(s) 16, 277, 319
PspFI CCCAGC 1 cut(s) 1246
PspGI CCWGG 3 cut(s) 16, 277, 319
PspN4I GGNNCC 6 cut(s) 15, 141, 283, 329, 363, 1395
PspPI GGNCC 1 cut(s) 1367
PstNI CAGNNNCTG 2 cut(s) 1055, 1253
PsuI RGATCY 2 cut(s) 281, 410
PsyI GACNNNGTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 5 cut(s) 60, 300, 1386, 1421, 1515
SatI GCNGC 5 cut(s) 6, 522, 1041, 1199, 1305
Sau96I GGNCC 1 cut(s) 1367
SchI GAGTC 2 cut(s) 604, 1482
ScrFI CCNGG 3 cut(s) 18, 279, 321
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 5 cut(s) 542, 600, 1042, 1366, 1496
SfuI TTCGAA 1 cut(s) 644
SgrAI CRCCGGYG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 7 cut(s) 21, 57, 581, 793, 897, 1147, 1512
SsiI CCGC 3 cut(s) 962, 1257, 1397
SspMI CTAG 6 cut(s) 69, 402, 513, 728, 1362, 1500
StyD4I CCNGG 3 cut(s) 16, 277, 319
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 1219, 1443
TaiI ACGT 6 cut(s) 195, 222, 264, 429, 923, 1386
TasI AATT 7 cut(s) 21, 57, 581, 793, 897, 1147, 1512
TfiI GAWTC 3 cut(s) 173, 1408, 1525
Tru1I TTAA 5 cut(s) 60, 300, 1386, 1421, 1515
Tru9I TTAA 5 cut(s) 60, 300, 1386, 1421, 1515
TscAI CASTG 1 cut(s) 1224
TseFI GTSAC 3 cut(s) 97, 671, 1065
TseI GCWGC 5 cut(s) 5, 521, 1040, 1198, 1304
Tsp45I GTSAC 3 cut(s) 97, 671, 1065
TspDTI ATGAA 7 cut(s) 62, 970, 1149, 1306, 1314, 1315, 1367
TspGWI ACGGA 3 cut(s) 435, 908, 1198
TspRI CASTG 1 cut(s) 1224
Tth111I GACNNNGTC 1 cut(s) 218
Van91I CCANNNNNTGG 2 cut(s) 1000, 1253
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 1 cut(s) 21
XbaI TCTAGA 2 cut(s) 727, 1361
XmiI GTMKAC 2 cut(s) 429, 758
XspI CTAG 6 cut(s) 69, 402, 513, 728, 1362, 1500
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.