Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

52007640 .. 52011002

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCTTCTCTCTGCTGCAATCACTCACCAACACCCCTCAAATTCCACTTCTACCCTCCTCATTTCCCCTATTTCCCCCAAACTCCCCTCCACCTCCCTCAAACCCCCTCACCGACCTCACCTCCTCCCCAACGCCTCTCTCCAGAACCCTACCCCCCAAACCATCCGCCACGTCACCCGCATCCCCTCCGATGATGCCGACCCCGGAGCCAACAACTCCATGGTCCCCTCCGCCTCCGCCGTCGCCTCCGCCATCCGCCGAGCCTCCACCTCCCCCGTCGACTTCATGCAGAGGATCGACAAGGACCAGAAAAACGGCATCGTTTTGCCTAGCTCCGACTTCCAGCGACTCTGCATTCAGCAGCTCGACCTCTTCCGCCGTATCGTCCATCCCGACGCTCTCCTCTCGGTATATGTAAGACCAGCTGGTAGCTATGTGATGGACCGATTAGAGCTGCGTAGAGTGACTTGCTATCCCGGCGTGAATGCATCAGATATTGTGATTTTAGTTGGCAGTTTTAGTGTTGCAACCGGTTTTCGTGCCGCCGAGGCAGTTCTTTCCAATCACAAAGTGGAAGTTATAGCAGAGTGTAAAGCTATGGTTTTTCCTATGGTGAAGCACCCTTTTGTGGTGGGGTTCTTGGTTGCTGAGTTACCCAGGATGGAAATGCCGTCACCGGGGAGTGTCCTGGGTGAAGGCTGTGATTTGGTTCACTGCCCCACTCCTGAGGAAGCCTATGCTTCGCCTCAGGAATCCGATGCCATATCTTGGGATGAGTACTCTTTGGAGAATGAACCGGATCGAGTAGTGAAAATGTACAAGTTTAGTGCGGAGCAGAGATCAATTGCTATCAACATTTCTCGGTCTTTAGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTCCAGAAATCATCGTGGCAGAATAACGTAAGGATGAGCAGTCTAGTTGAGCAGATTCGTGGTCCTCTTTCTAGCATTCGAACTTTGAGTAAAATGTTGTCCATGCATACAAAGAGAAGTGAGATTTCTTATGACATTGTTGAAGATATACTGGTACAAGGCGATCAAGTGAAAGATACCCTTCAGCAACTCCAAGATGCTGTTTACTTGACTAAGGCTAATATTATGCGCTATAGCGAACAAGACTCTACATATGTATATCCTGACGCACGGAGATCTCAATTATTGAATAACTTGCCAAGTGATAGTTCCAGCATTAAGATGCAACTTTCTGGTGAACAACTTTCTCTAAAAGCTCCAACCAAAGATATAGAGATGCCGATGCCACCTCTAGCCCTTGCTCCTTCACAGCAAGATGGAATTAGGAAGACCGTGCAATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

450

Amino Acids

49.83

Weight (kDa)

6.8

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	9 cut(s)	166, 178, 231, 237, 249, 256, 376, 543, 830
AclWI	GGATC	3 cut(s)	302, 807, 897
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	1073
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	3 cut(s)	779, 818, 1062
AfiI	CCNNNNNNNGG	3 cut(s)	628, 677, 768
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	1049, 1195
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	656, 687
AjuI	GAANNNNNNNTTGG	2 cut(s)	1198, 1230
AluBI	AGCT	8 cut(s)	333, 364, 425, 432, 454, 596, 872, 1262
AluI	AGCT	8 cut(s)	333, 364, 425, 432, 454, 596, 872, 1262
AlwI	GGATC	3 cut(s)	302, 807, 897
ApeKI	GCWGC	3 cut(s)	14, 361, 454
ApoI	RAATTY	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	1137
AspS9I	GGNCC	4 cut(s)	223, 304, 442, 968
AsuC2I	CCSGG	3 cut(s)	204, 477, 678
AsuHPI	GGTGA	8 cut(s)	17, 101, 110, 166, 625, 666, 704, 1253
AsuII	TTCGAA	1 cut(s)	985
AvaII	GGWCC	4 cut(s)	223, 304, 442, 968
AxyI	CCTNAGG	2 cut(s)	726, 747
BbsI	GAAGAC	1 cut(s)	1340
BbvI	GCAGC	2 cut(s)	373, 441
BccI	CCATC	6 cut(s)	170, 260, 396, 433, 655, 1316
BceAI	ACGGC	4 cut(s)	224, 331, 363, 655
BciT130I	CCWGG	2 cut(s)	658, 689
BcnI	CCSGG	3 cut(s)	204, 477, 678
BfaI	CTAG	4 cut(s)	330, 950, 978, 1298
BfmI	CTRYAG	1 cut(s)	1138
BglI	GCCNNNNNGGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	1181
BisI	GCNGC	4 cut(s)	15, 362, 455, 543
BlsI	GCNGC	4 cut(s)	16, 363, 456, 544
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	5 cut(s)	204, 477, 658, 678, 689
Bme18I	GGWCC	4 cut(s)	223, 304, 442, 968
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	4 cut(s)	223, 304, 442, 968
BmiI	GGNNCC	2 cut(s)	208, 225
BmrFI	CCNGG	5 cut(s)	204, 477, 658, 678, 689
BmsI	GCATC	9 cut(s)	184, 189, 327, 497, 748, 1093, 1218, 1272, 1278
BpiI	GAAGAC	1 cut(s)	1340
BpmI	CTGGAG	2 cut(s)	125, 893
Bpu14I	TTCGAA	1 cut(s)	985
BpuMI	CCSGG	3 cut(s)	204, 477, 678
BsaJI	CCNNGG	6 cut(s)	202, 219, 546, 656, 677, 688
BsaWI	WCCGGW	2 cut(s)	530, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 677, 768
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	1062
Bse21I	CCTNAGG	2 cut(s)	726, 747
Bse3DI	GCAATG	2 cut(s)	906, 1349
BseBI	CCWGG	2 cut(s)	658, 689
BseDI	CCNNGG	6 cut(s)	202, 219, 546, 656, 677, 688
BseGI	GGATG	7 cut(s)	162, 180, 252, 388, 666, 778, 945
BseLI	CCNNNNNNNGG	3 cut(s)	628, 677, 768
BseMI	GCAATG	2 cut(s)	906, 1349
BseMII	CTCAG	3 cut(s)	639, 717, 761
BseNI	ACTGG	1 cut(s)	1062
BseRI	GAGGAG	3 cut(s)	47, 113, 392
BseXI	GCAGC	2 cut(s)	373, 441
BshTI	ACCGGT	1 cut(s)	530
BsiSI	CCGG	5 cut(s)	204, 477, 531, 677, 797
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	628, 677, 768
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	3 cut(s)	354, 490, 981
Bsp119I	TTCGAA	1 cut(s)	985
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	9 cut(s)	166, 178, 231, 237, 249, 256, 376, 543, 830
BspCNI	CTCAG	3 cut(s)	640, 718, 760
BspLI	GGNNCC	2 cut(s)	208, 225
BspPI	GGATC	3 cut(s)	302, 807, 897
BspT104I	TTCGAA	1 cut(s)	985
BsrDI	GCAATG	2 cut(s)	906, 1349
BsrFI	RCCGGY	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	1062
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	6 cut(s)	202, 219, 546, 656, 677, 688
BssMI	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	658, 689
Bst4CI	ACNGT	1 cut(s)	1339
Bst6I	CTCTTC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	816
BstBI	TTCGAA	1 cut(s)	985
BstDEI	CTNAG	4 cut(s)	648, 726, 747, 1119
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	7 cut(s)	162, 180, 252, 388, 666, 778, 945
BstHHI	GCGC	1 cut(s)	1137
BstKTI	GATC	6 cut(s)	297, 802, 842, 892, 1072, 1184
BstMBI	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 548
BstNI	CCWGG	2 cut(s)	658, 689
BstSCI	CCNGG	5 cut(s)	202, 475, 656, 676, 687
BstSFI	CTRYAG	1 cut(s)	1138
BstV1I	GCAGC	2 cut(s)	373, 441
BstV2I	GAAGAC	1 cut(s)	1340
BstX2I	RGATCY	1 cut(s)	1181
BstYI	RGATCY	1 cut(s)	1181
Bsu36I	CCTNAGG	2 cut(s)	726, 747
BtgI	CCRYGG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	7 cut(s)	162, 180, 252, 388, 666, 778, 945
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	712
CfoI	GCGC	1 cut(s)	1137
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	4 cut(s)	223, 304, 442, 968
CseI	GACGC	2 cut(s)	404, 1181
Csp6I	GTAC	3 cut(s)	778, 817, 1061
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	3 cut(s)	220, 286, 1009
CviQI	GTAC	3 cut(s)	778, 817, 1061
DdeI	CTNAG	4 cut(s)	648, 726, 747, 1119
DpnI	GATC	6 cut(s)	296, 801, 841, 891, 1071, 1183
DpnII	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
DraIII	CACNNNGTG	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EciI	GGCGGA	6 cut(s)	155, 220, 226, 238, 245, 365
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	4 cut(s)	223, 304, 442, 968
Eco57I	CTGAAG	1 cut(s)	1073
Eco81I	CCTNAGG	2 cut(s)	726, 747
EcoRII	CCWGG	2 cut(s)	656, 687
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	2 cut(s)	490, 1014
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	223, 289, 1012
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	219, 285, 1008
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	2 cut(s)	880, 1159
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	15, 362, 455, 543
FokI	GGATG	7 cut(s)	149, 167, 239, 375, 673, 785, 952
Fsp4HI	GCNGC	4 cut(s)	15, 362, 455, 543
FspBI	CTAG	4 cut(s)	330, 950, 978, 1298
GlaI	GCGC	1 cut(s)	1136
GluI	GCNGC	4 cut(s)	15, 362, 455, 543
GsuI	CTGGAG	2 cut(s)	125, 893
HapII	CCGG	5 cut(s)	204, 477, 531, 677, 797
HgaI	GACGC	2 cut(s)	404, 1181
HhaI	GCGC	1 cut(s)	1137
Hin1II	CATG	3 cut(s)	223, 289, 1012
Hin6I	GCGC	1 cut(s)	1135
HinP1I	GCGC	1 cut(s)	1135
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	348, 752, 961, 1151
HpaII	CCGG	5 cut(s)	204, 477, 531, 677, 797
HphI	GGTGA	8 cut(s)	17, 101, 110, 166, 625, 666, 704, 1253
Hpy166II	GTNNAC	4 cut(s)	280, 712, 1111, 1244
Hpy188I	TCNGA	6 cut(s)	190, 337, 493, 757, 894, 1352
Hpy188III	TCNNGA	6 cut(s)	142, 392, 725, 749, 910, 1169
Hpy8I	GTNNAC	4 cut(s)	280, 712, 1111, 1244
Hpy99I	CGWCG	3 cut(s)	245, 281, 398
HpyAV	CCTTC	3 cut(s)	689, 1097, 1320
HpyCH4III	ACNGT	1 cut(s)	1339
HpyCH4IV	ACGT	2 cut(s)	171, 933
HpyCH4V	TGCA	8 cut(s)	17, 289, 354, 488, 527, 1012, 1231, 1342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 548
HpyF3I	CTNAG	4 cut(s)	648, 726, 747, 1119
HpySE526I	ACGT	2 cut(s)	171, 933
Hsp92II	CATG	3 cut(s)	223, 289, 1012
HspAI	GCGC	1 cut(s)	1135
Kzo9I	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
LmnI	GCTCC	5 cut(s)	206, 338, 832, 1267, 1312
Lsp1109I	GCAGC	2 cut(s)	373, 441
LweI	GCATC	9 cut(s)	184, 189, 327, 497, 748, 1093, 1218, 1272, 1278
MaeI	CTAG	4 cut(s)	330, 950, 978, 1298
MaeII	ACGT	2 cut(s)	171, 933
MaeIII	GTNAC	5 cut(s)	172, 463, 651, 672, 903
MalI	GATC	6 cut(s)	296, 801, 841, 891, 1071, 1183
MboI	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
MboII	GAAGA	3 cut(s)	364, 1061, 1345
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	1181
MluCI	AATT	4 cut(s)	40, 843, 1187, 1326
MlyI	GAGTC	2 cut(s)	342, 1145
MmeI	TCCRAC	2 cut(s)	360, 1289
Mph1103I	ATGCAT	2 cut(s)	490, 1014
MseI	TTAA	1 cut(s)	1224
MslI	CAYNNNNRTG	1 cut(s)	1226
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	5 cut(s)	204, 477, 531, 677, 797
MspR9I	CCNGG	5 cut(s)	204, 477, 658, 678, 689
MunI	CAATTG	1 cut(s)	843
Mva1269I	GAATGC	3 cut(s)	354, 490, 981
MvaI	CCWGG	2 cut(s)	658, 689
MwoI	GCNNNNNNNGC	2 cut(s)	477, 548
NciI	CCSGG	3 cut(s)	204, 477, 678
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	2 cut(s)	880, 1159
NdeII	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
NlaIII	CATG	3 cut(s)	223, 289, 1012
NlaIV	GGNNCC	2 cut(s)	208, 225
NmeAIII	GCCGAG	2 cut(s)	284, 571
NmuCI	GTSAC	3 cut(s)	172, 463, 672
NsiI	ATGCAT	2 cut(s)	490, 1014
NspV	TTCGAA	1 cut(s)	985
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	3 cut(s)	354, 490, 981
PfeI	GAWTC	2 cut(s)	752, 961
PflMI	CCANNNNNTGG	1 cut(s)	768
PinAI	ACCGGT	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	16, 363, 456, 544
PleI	GAGTC	2 cut(s)	342, 1145
PpsI	GAGTC	2 cut(s)	342, 1145
Psp6I	CCWGG	2 cut(s)	656, 687
PspGI	CCWGG	2 cut(s)	656, 687
PspN4I	GGNNCC	2 cut(s)	208, 225
PspPI	GGNCC	4 cut(s)	223, 304, 442, 968
PsuI	RGATCY	1 cut(s)	1181
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	779, 818, 1062
RsaNI	GTAC	3 cut(s)	778, 817, 1061
RseI	CAYNNNNRTG	1 cut(s)	1226
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	1224
SatI	GCNGC	4 cut(s)	15, 362, 455, 543
Sau3AI	GATC	6 cut(s)	294, 799, 839, 889, 1069, 1181
Sau96I	GGNCC	4 cut(s)	223, 304, 442, 968
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	2 cut(s)	342, 1145
ScrFI	CCNGG	5 cut(s)	204, 477, 658, 678, 689
SfaNI	GCATC	9 cut(s)	184, 189, 327, 497, 748, 1093, 1218, 1272, 1278
SfcI	CTRYAG	1 cut(s)	1138
SfuI	TTCGAA	1 cut(s)	985
SinI	GGWCC	4 cut(s)	223, 304, 442, 968
SmiMI	CAYNNNNRTG	1 cut(s)	1226
Sse9I	AATT	4 cut(s)	40, 843, 1187, 1326
SsiI	CCGC	9 cut(s)	166, 178, 231, 237, 249, 256, 376, 543, 830
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	4 cut(s)	330, 950, 978, 1298
StyD4I	CCNGG	5 cut(s)	202, 475, 656, 676, 687
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	1339
TaiI	ACGT	2 cut(s)	174, 936
TaqI	TCGA	5 cut(s)	279, 297, 366, 802, 985
TaqII	GACCGA	2 cut(s)	459, 852
TasI	AATT	4 cut(s)	40, 843, 1187, 1326
TatI	WGTACW	2 cut(s)	777, 816
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	752, 961
Tru1I	TTAA	1 cut(s)	1224
Tru9I	TTAA	1 cut(s)	1224
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	3 cut(s)	172, 463, 672
TseI	GCWGC	3 cut(s)	14, 361, 454
Tsp45I	GTSAC	3 cut(s)	172, 463, 672
TspDTI	ATGAA	2 cut(s)	274, 807
TspGWI	ACGGA	1 cut(s)	1192
TspRI	CASTG	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	4 cut(s)	223, 304, 442, 968
XapI	RAATTY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	2 cut(s)	217, 568
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	4 cut(s)	330, 950, 978, 1298
ZrmI	AGTACT	1 cut(s)	779
Zsp2I	ATGCAT	2 cut(s)	490, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.