Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019062.1

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

1184 .. 5350

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcagggcttactggtgggagtggtggaggaggattaggaggagaagaggtggctgagcttggtggggatgacgacgaaggtggagatggagttgcgaaccggtttcccagttggggactgaactggagcttcggaaaaaccatggcggctaattgtgcgagaagaaccctacaattttcttcagcttccaccaaaaccctgttcaactcttcacagttcgcctccaaaggttttaatctcagtgaactcgctggcgccaaaaccacatctactcctcgattcgctactcacaagctcaagttctcaaggcttcctgtggagttggccgccgcacagtcattgatccctttgcacagtgctactgcttctgccttgttcacttcgctcctgtctttgcacaataccagctgggggtgcctatcagaaggttttgcgacccctttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.35

Weight (kDa)

6.82

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 417
AciI	CCGC	3 cut(s)	149, 330, 333
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	116, 414
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	5 cut(s)	61, 132, 188, 298, 411
AluI	AGCT	5 cut(s)	61, 132, 188, 298, 411
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	327
AsiGI	ACCGGT	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	257, 417
BccI	CCATC	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	3 cut(s)	150, 330, 333
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	3 cut(s)	151, 331, 334
BmiI	GGNNCC	2 cut(s)	259, 419
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	284, 292
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 78, 108, 259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 414
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	3 cut(s)	19, 111, 131
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	116, 414
BseMII	CTCAG	2 cut(s)	48, 256
BseNI	ACTGG	3 cut(s)	19, 111, 131
BseRI	GAGGAG	3 cut(s)	45, 57, 267
BseYI	CCCAGC	1 cut(s)	411
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	257, 417
BshTI	ACCGGT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	116, 414
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	345
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	3 cut(s)	149, 330, 333
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	49, 255
BspLI	GGNNCC	2 cut(s)	259, 419
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	2 cut(s)	257, 417
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	19, 111, 131
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	219, 339, 359
Bst6I	CTCTTC	2 cut(s)	42, 217
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	57, 242
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 417
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	250, 364
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	102
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	57, 242
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	42, 217
EarI	CTCTTC	2 cut(s)	42, 217
Eco130I	CCWWGG	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 448
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	150, 330, 333
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	150, 330, 333
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	150, 330, 333
GsaI	CCCAGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	248, 381
Hpy188I	TCNGA	2 cut(s)	137, 427
Hpy8I	GTNNAC	2 cut(s)	248, 381
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	74, 422
HpyCH4III	ACNGT	3 cut(s)	219, 339, 359
HpyCH4V	TGCA	2 cut(s)	355, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 417
HpyF3I	CTNAG	2 cut(s)	57, 242
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	258
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	129, 393
LpnPI	CCDG	9 cut(s)	112, 116, 124, 215, 240, 330, 397, 404, 421
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	4 cut(s)	59, 174, 177, 204
MluCI	AATT	2 cut(s)	154, 176
Mly113I	GGCGCC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	23, 26, 35, 43, 235, 288
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	158, 417
NarI	GGCGCC	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	259, 419
PfeI	GAWTC	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	151, 331, 334
PluTI	GGCGCC	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	259, 419
PvuII	CAGCTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	150, 330, 333
Sau3AI	GATC	1 cut(s)	345
SetI	ASST	9 cut(s)	54, 63, 85, 134, 190, 235, 300, 413, 433
SfoI	GGCGCC	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	299, 307
SmoI	CTYRAG	2 cut(s)	299, 307
Sse9I	AATT	2 cut(s)	154, 176
SsiI	CCGC	3 cut(s)	149, 330, 333
SspDI	GGCGCC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	219, 339, 359
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	154, 176
TauI	GCSGC	3 cut(s)	152, 332, 335
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	250, 364
TspRI	CASTG	2 cut(s)	250, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.