Rw4G035050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006448
Physical Location & Seq
Reverse (-)
61911488 .. 61913412
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035050.1

Sequence Viewer

Length: 306 bp
ATGGCGGCTAATTGTGCGAGAAGAACCCTACAATTTTCTTCAGCTTCCTCCAAAACCCTGTTCAACTCTTCACAGTTCGCCTCCAAAGGTTTTAATCTCAGTGAACTCGCTGGCGCCAAAACCACATCTACTCCTCGATTCGCTACTCACAAGCTCAAGTTCTCAAGGCTTCCTGTGGAGTTGGCCGCCGCACAGTCATTGATCCCGCTGCACAGTGCTACTGCTTCTGCCTTGTTCACTTCACTCCTGTCTTTGCACAATACCAGCTGGGGGTGCCTATCAGAAGGTTTTGCAACCCCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.71

Weight (kDa)

10.2

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 273
AciI CCGC 4 cut(s) 5, 186, 189, 206
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 44, 154, 267
AluI AGCT 3 cut(s) 44, 154, 267
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 113, 273
BbvI GCAGC 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 4 cut(s) 6, 186, 189, 209
BlsI GCNGC 4 cut(s) 7, 187, 190, 210
BmiI GGNNCC 2 cut(s) 115, 275
BpuEI CTTGAG 2 cut(s) 140, 148
BsaHI GRCGYC 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 2 cut(s) 113, 273
BslI CCNNNNNNNGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 4 cut(s) 5, 186, 189, 206
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 115, 275
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 113, 273
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 75, 195, 215
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 14, 273
BstV1I GCAGC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 106, 220
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 116
CviJI RGCY 6 cut(s) 8, 44, 154, 169, 185, 267
CviKI_1 RGCY 6 cut(s) 8, 44, 154, 169, 185, 267
DdeI CTNAG 1 cut(s) 98
DinI GGCGCC 1 cut(s) 115
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
FaiI YATR 1 cut(s) 304
FauI CCCGC 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 6, 186, 189, 209
Fsp4HI GCNGC 4 cut(s) 6, 186, 189, 209
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 6, 186, 189, 209
GsaI CCCAGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 104, 237
Hpy188I TCNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 104, 237
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 75, 195, 215
HpyCH4V TGCA 3 cut(s) 211, 256, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 273
HpyF3I CTNAG 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 6 cut(s) 71, 96, 186, 253, 260, 277
Lsp1109I GCAGC 1 cut(s) 195
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 3 cut(s) 30, 33, 60
MluCI AATT 2 cut(s) 10, 32
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 3 cut(s) 58, 91, 144
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 2 cut(s) 208, 267
MwoI GCNNNNNNNGC 2 cut(s) 14, 273
NarI GGCGCC 1 cut(s) 114
NdeII GATC 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 115, 275
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 4 cut(s) 7, 187, 190, 210
PluTI GGCGCC 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 115, 275
PvuII CAGCTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 4 cut(s) 6, 186, 189, 209
Sau3AI GATC 1 cut(s) 201
SetI ASST 5 cut(s) 46, 91, 156, 269, 289
SfoI GGCGCC 1 cut(s) 115
SmlI CTYRAG 2 cut(s) 155, 163
SmoI CTYRAG 2 cut(s) 155, 163
Sse9I AATT 2 cut(s) 10, 32
SsiI CCGC 4 cut(s) 5, 186, 189, 206
SspDI GGCGCC 1 cut(s) 113
TaaI ACNGT 3 cut(s) 75, 195, 215
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 10, 32
TauI GCSGC 3 cut(s) 8, 188, 191
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 106, 220
TseI GCWGC 1 cut(s) 208
TspRI CASTG 2 cut(s) 106, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.