Rh4BG419100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006448
Physical Location & Seq
Reverse (-)
56548391 .. 56550996
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG419100.1

Sequence Viewer

Length: 399 bp
ATGGCGGCTAATTGTGCGAGAAGAACCCTACAATTTTCTTCAGCTTCCGCCAAAGCCCTGTTCAACTCTTCACAGTTCGCCTCCAAAGGTTTTAATCTCAGTGAACTCGCTGGCGCCAAAACCACATCTACTCCTCGATTCGCTACTCACAAGCTCAAGTTCTCAAGGCTTCCTGTGGAGTTGGCCGCCGCACAGTCATTGATCCCTTTGCATAGTGCTACTGCTTCTGCCTTGTTCACTTCGCTCCTGTCTTTGCACAATACCAGCTGGGGGTGCCTATCAGAAGGTATCGTCAGAGTTTACTTTCATTTTCATACAGTAGCTTGTTTGGTGGCGTATGATTTTAATTCGTATTGCGTTTTATCATGTCAAGAATCCAGAGCATGCCATGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

9.24

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 273
AciI CCGC 4 cut(s) 5, 48, 186, 189
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 4 cut(s) 44, 154, 267, 323
AluI AGCT 4 cut(s) 44, 154, 267, 323
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 113, 273
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 6, 186, 189
BlsI GCNGC 3 cut(s) 7, 187, 190
BmiI GGNNCC 2 cut(s) 115, 275
BpuEI CTTGAG 2 cut(s) 140, 148
BsaHI GRCGYC 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 2 cut(s) 113, 273
BslI CCNNNNNNNGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 4 cut(s) 5, 48, 186, 189
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 115, 275
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 2 cut(s) 113, 273
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 75, 195, 319
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 112, 385
BstDEI CTNAG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 14, 273
BstNSI RCATGY 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 395
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 112, 385
CfoI GCGC 1 cut(s) 116
CviAII CATG 3 cut(s) 366, 384, 389
CviJI RGCY 8 cut(s) 8, 44, 56, 154, 169, 185, 267, 323
CviKI_1 RGCY 8 cut(s) 8, 44, 56, 154, 169, 185, 267, 323
DdeI CTNAG 1 cut(s) 98
DinI GGCGCC 1 cut(s) 115
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
FaeI CATG 3 cut(s) 369, 387, 392
FaiI YATR 7 cut(s) 213, 315, 339, 367, 385, 390, 397
FatI CATG 3 cut(s) 365, 383, 388
Fnu4HI GCNGC 3 cut(s) 6, 186, 189
Fsp4HI GCNGC 3 cut(s) 6, 186, 189
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 6, 186, 189
GsaI CCCAGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 369, 387, 392
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 138, 374
Hpy166II GTNNAC 3 cut(s) 104, 237, 301
Hpy188I TCNGA 2 cut(s) 283, 296
Hpy188III TCNNGA 2 cut(s) 371, 378
Hpy8I GTNNAC 3 cut(s) 104, 237, 301
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 75, 195, 319
HpyCH4V TGCA 2 cut(s) 211, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 273
HpyF3I CTNAG 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 369, 387, 392
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 71, 96, 186, 253, 260, 277, 391
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 3 cut(s) 30, 33, 60
MluCI AATT 3 cut(s) 10, 32, 346
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 2 cut(s) 91, 144
MseI TTAA 2 cut(s) 93, 345
MspA1I CMGCKG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 14, 273
NarI GGCGCC 1 cut(s) 114
NdeII GATC 1 cut(s) 201
NlaIII CATG 3 cut(s) 369, 387, 392
NlaIV GGNNCC 2 cut(s) 115, 275
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 138, 374
PkrI GCNGC 3 cut(s) 7, 187, 190
PluTI GGCGCC 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 115, 275
PvuII CAGCTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 93, 345
SatI GCNGC 3 cut(s) 6, 186, 189
Sau3AI GATC 1 cut(s) 201
SetI ASST 6 cut(s) 46, 91, 156, 269, 289, 325
SfcI CTRYAG 1 cut(s) 395
SfoI GGCGCC 1 cut(s) 115
SmlI CTYRAG 2 cut(s) 155, 163
SmoI CTYRAG 2 cut(s) 155, 163
SphI GCATGC 1 cut(s) 387
Sse9I AATT 3 cut(s) 10, 32, 346
SsiI CCGC 4 cut(s) 5, 48, 186, 189
SspDI GGCGCC 1 cut(s) 113
TaaI ACNGT 3 cut(s) 75, 195, 319
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 10, 32, 346
TauI GCSGC 3 cut(s) 8, 188, 191
TfiI GAWTC 2 cut(s) 138, 374
Tru1I TTAA 2 cut(s) 93, 345
Tru9I TTAA 2 cut(s) 93, 345
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 296, 302
TspRI CASTG 1 cut(s) 106
XceI RCATGY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.