Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

56545560 .. 56548237

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG419000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGCTAATTGCGCGAGGCGAACCCTACAATCTTCTTCAGCTTCCGCGAAAGCCCTTTTCAACTCATCGTCGTCTTCACCGTTCGCCTCCAAAGCTTTTAAGCTCAGTGAACTCGCTGGCGCCAAAACCACATCTACTTCCCGCTTTTTCGCTACTCAGAAGCTCAAGTTCTCAAGGCTTCCTGTGGAGTTGGCCGCTGCACAGTCATTGATCCCGCTGCACAGTGCTACTGCTTCTGCCTTGTTCACTTCGCTCCTGTCTTTGCACAATACCAGCTGGGGCTGCCTATCAGAAGGTATCCGTCAGAATTTACTTTGTTATCATAGAGTGGCTTGTTTGGTGGCCTATGATTTTAGTTCGCACTACATTTTATCATGTCAAGAATCGAGAGCATGCCATGTTCTATGGTACGGAGTAATTAGATTGTGTATGAAAACATGTAAAGGATGCTTTTGCTTTATTACCAAGATAAATGATTGTGTACCCTGCTATGGATGGTTACTTGGTAAGGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.95

Weight (kDa)

9.35

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	2 cut(s)	17, 50
AciI	CCGC	5 cut(s)	5, 48, 145, 198, 218
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	413, 486
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	5 cut(s)	44, 98, 106, 166, 279
AluI	AGCT	5 cut(s)	44, 98, 106, 166, 279
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	195, 345
ApeKI	GCWGC	3 cut(s)	200, 220, 285
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	17, 125
AsuHPI	GGTGA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	187, 207, 272
BccI	CCATC	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	5 cut(s)	6, 198, 201, 221, 286
BlsI	GCNGC	5 cut(s)	7, 199, 202, 222, 287
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	152, 160
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	455, 503
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	121, 173
BseXI	GCAGC	3 cut(s)	187, 207, 272
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	2 cut(s)	186, 206
Bsh1236I	CGCG	2 cut(s)	17, 50
BshFI	GGCC	2 cut(s)	197, 347
BshNI	GGYRCC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	494
BsnI	GGCC	2 cut(s)	197, 347
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	5, 48, 145, 198, 218
BspANI	GGCC	2 cut(s)	197, 347
BspCNI	CTCAG	2 cut(s)	120, 172
BspFNI	CGCG	2 cut(s)	17, 50
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	122
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	84, 207, 227
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	121, 397
BstDEI	CTNAG	2 cut(s)	107, 159
BstF5I	GGATG	2 cut(s)	455, 503
BstFNI	CGCG	2 cut(s)	17, 50
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	17, 125
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
BstNSI	RCATGY	2 cut(s)	399, 444
BstUI	CGCG	2 cut(s)	17, 50
BstV1I	GCAGC	3 cut(s)	187, 207, 272
BstV2I	GAAGAC	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	197, 347
BtsCI	GGATG	2 cut(s)	455, 503
BtsIMutI	CAGTG	2 cut(s)	115, 232
Cac8I	GCNNGC	2 cut(s)	121, 397
CfoI	GCGC	2 cut(s)	17, 125
Csp6I	GTAC	2 cut(s)	412, 485
CviAII	CATG	4 cut(s)	378, 396, 401, 441
CviQI	GTAC	2 cut(s)	412, 485
DdeI	CTNAG	2 cut(s)	107, 159
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaeI	CATG	4 cut(s)	381, 399, 404, 444
FaiI	YATR	9 cut(s)	327, 351, 379, 397, 402, 409, 434, 442, 495
FatI	CATG	4 cut(s)	377, 395, 400, 440
FauI	CCCGC	2 cut(s)	152, 225
Fnu4HI	GCNGC	5 cut(s)	6, 198, 201, 221, 286
FokI	GGATG	2 cut(s)	462, 510
Fsp4HI	GCNGC	5 cut(s)	6, 198, 201, 221, 286
GlaI	GCGC	2 cut(s)	16, 124
GluI	GCNGC	5 cut(s)	6, 198, 201, 221, 286
GsaI	CCCAGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	197, 347
HhaI	GCGC	2 cut(s)	17, 125
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	381, 399, 404, 444
Hin6I	GCGC	2 cut(s)	15, 123
HinP1I	GCGC	2 cut(s)	15, 123
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	386
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	113, 249, 485
Hpy188I	TCNGA	3 cut(s)	162, 295, 309
Hpy188III	TCNNGA	2 cut(s)	383, 390
Hpy8I	GTNNAC	3 cut(s)	113, 249, 485
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	3 cut(s)	84, 207, 227
HpyCH4V	TGCA	3 cut(s)	203, 223, 268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
HpyF3I	CTNAG	2 cut(s)	107, 159
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	381, 399, 404, 444
HspAI	GCGC	2 cut(s)	15, 123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	105, 198, 265, 272, 289, 502
Lsp1109I	GCAGC	3 cut(s)	187, 207, 272
LweI	GCATC	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	27, 30, 69
MluCI	AATT	3 cut(s)	10, 310, 420
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	2 cut(s)	12, 100
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	200, 220, 279
MvnI	CGCG	2 cut(s)	17, 50
MwoI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	4 cut(s)	381, 399, 404, 444
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	399, 444
PaeI	GCATGC	1 cut(s)	399
PciI	ACATGT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	7, 199, 202, 222, 287
PluTI	GGCGCC	1 cut(s)	126
PscI	ACATGT	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	279
RsaI	GTAC	2 cut(s)	413, 486
RsaNI	GTAC	2 cut(s)	412, 485
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	5 cut(s)	6, 198, 201, 221, 286
Sau3AI	GATC	1 cut(s)	213
SetI	ASST	7 cut(s)	46, 100, 108, 168, 281, 301, 516
SfaNI	GCATC	1 cut(s)	440
SfoI	GGCGCC	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	167, 175
SmoI	CTYRAG	2 cut(s)	167, 175
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	3 cut(s)	10, 310, 420
SsiI	CCGC	5 cut(s)	5, 48, 145, 198, 218
SspDI	GGCGCC	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	84, 207, 227
TaqI	TCGA	1 cut(s)	389
TasI	AATT	3 cut(s)	10, 310, 420
TauI	GCSGC	2 cut(s)	8, 200
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	115, 232
TseI	GCWGC	3 cut(s)	200, 220, 285
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	2 cut(s)	293, 429
TspRI	CASTG	2 cut(s)	115, 232
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	2 cut(s)	399, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.