AT1G70350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006448
Physical Location & Seq
Reverse (-)
26507040 .. 26508356
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70350.1

Sequence Viewer

Length: 318 bp
ATGGCGGCCAACGGCGTGAGAAGAGCTCTTCAGGCATCGTCATCCTCCGGGAAGATACTCTTTGGTCGTTCATCAGCGGCAACTTCTGCTTCGAAGATCGGAAAATCAGCCGGAATTGCTTTCGGGAATGGATCATCTTCTTCAACTCGTCCCTCACTTCGTAGACTCACATTCTCCAGGGTACCTGTGGAATTGAGTGCAGGGATTTCACTAATACCATTACATAGTGTTACTGCTTCAGCTTTGCTCACTTCATTGCTATCTCTGAGCAATCAAAACTGGAGTTGCTTATCAGAAGGATTTGCTTCAACACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.67

Weight (kDa)

11.89

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 163
AciI CCGC 2 cut(s) 5, 77
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 2 cut(s) 14, 222
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 2 cut(s) 144, 309
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 26, 242
AluI AGCT 2 cut(s) 26, 242
Alw21I GWGCWC 1 cut(s) 28
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 49
BisI GCNGC 2 cut(s) 6, 78
BlsI GCNGC 2 cut(s) 7, 79
Bme1390I CCNGG 2 cut(s) 49, 178
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 49, 178
BmsI GCATC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 2 cut(s) 160, 301
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 2 cut(s) 48, 111
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 96, 131
BspACI CCGC 2 cut(s) 5, 77
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 139
BspQI GCTCTTC 2 cut(s) 16, 33
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 254
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 96, 131
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 16, 33
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 2 cut(s) 99, 134
BstMBI GATC 2 cut(s) 96, 131
BstMWI GCNNNNNNNGC 3 cut(s) 32, 86, 116
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 47, 176
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 41
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 4 cut(s) 8, 26, 110, 242
CviKI_1 RGCY 4 cut(s) 8, 26, 110, 242
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 98, 133
DpnII GATC 2 cut(s) 96, 131
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 16, 33
EarI CTCTTC 2 cut(s) 16, 33
Ecl136II GAGCTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 14, 222
EcoICRI GAGCTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 28
FaiI YATR 2 cut(s) 225, 316
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 135
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 6, 78
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 6, 78
GluI GCNGC 2 cut(s) 6, 78
GsuI CTGGAG 2 cut(s) 160, 301
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 48, 111
HinfI GANTC 1 cut(s) 165
HpaII CCGG 2 cut(s) 48, 111
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 101, 267, 295
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 290
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 86, 116
HpyF3I CTNAG 1 cut(s) 266
KpnI GGTACC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 96, 131
LguI GCTCTTC 2 cut(s) 16, 33
LpnPI CCDG 8 cut(s) 17, 61, 124, 163, 186, 190, 198, 265
LweI GCATC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 98, 133
MboI GATC 2 cut(s) 96, 131
MboII GAAGA 6 cut(s) 20, 33, 64, 106, 129, 132
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 114, 191
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 2 cut(s) 55, 163
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 48, 111
MspR9I CCNGG 2 cut(s) 49, 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 32, 86, 116
NciI CCSGG 1 cut(s) 49
NdeII GATC 2 cut(s) 96, 131
NlaIV GGNNCC 1 cut(s) 183
NspV TTCGAA 1 cut(s) 92
PciSI GCTCTTC 2 cut(s) 16, 33
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 2 cut(s) 7, 79
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 2 cut(s) 16, 33
SatI GCNGC 2 cut(s) 6, 78
Sau3AI GATC 2 cut(s) 96, 131
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 49, 178
SduI GDGCHC 1 cut(s) 28
SetI ASST 3 cut(s) 28, 187, 244
SfaNI GCATC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 92
Sse9I AATT 2 cut(s) 114, 191
SsiI CCGC 2 cut(s) 5, 77
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 47, 176
TaqI TCGA 1 cut(s) 92
TasI AATT 2 cut(s) 114, 191
TauI GCSGC 2 cut(s) 8, 80
TspDTI ATGAA 2 cut(s) 60, 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.