Rh4AG408000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006448
Physical Location & Seq
Reverse (-)
70853779 .. 70856456
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG408000.1

Sequence Viewer

Length: 318 bp
ATGGCGGCTAATTGCGCGAGGCGAACCCTACAATCTTCTTCAGCTTCCGCGAAAGCCCTTTTCAACTCATCGTCGTCTTCACCGTTCGCCTCCAAAGCTTTTAAGCTCAGTGAACTCGCTGGCGCCAAAACCACATCTACTTCCCGCTTTTTCGCTACTCAGAAGCTCAAGTTCTCAAGGCTTCCTGTGGAGTTGGCCGCTGCACAGTCATTGATCCCGCTGCACAGTGCTACTGCTTCTGCCTTGTTCACTTCGCTCCTGTCTTTGCACAATACCAGCTGGGGCTGCCTATCAGAAGGTTTTGCAACCCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.99

Weight (kDa)

10.31

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 2 cut(s) 17, 50
AciI CCGC 5 cut(s) 5, 48, 145, 198, 218
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 5 cut(s) 44, 98, 106, 166, 279
AluI AGCT 5 cut(s) 44, 98, 106, 166, 279
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 200, 220, 285
AspLEI GCGC 2 cut(s) 17, 125
AsuHPI GGTGA 1 cut(s) 72
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 187, 207, 272
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 5 cut(s) 6, 198, 201, 221, 286
BlsI GCNGC 5 cut(s) 7, 199, 202, 222, 287
BmiI GGNNCC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 2 cut(s) 152, 160
BsaHI GRCGYC 1 cut(s) 123
BseMII CTCAG 2 cut(s) 121, 173
BseXI GCAGC 3 cut(s) 187, 207, 272
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 2 cut(s) 186, 206
Bsh1236I CGCG 2 cut(s) 17, 50
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 122
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 5 cut(s) 5, 48, 145, 198, 218
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 120, 172
BspFNI CGCG 2 cut(s) 17, 50
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 122
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 84, 207, 227
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 107, 159
BstFNI CGCG 2 cut(s) 17, 50
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 17, 125
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 14, 95, 285
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 2 cut(s) 17, 50
BstV1I GCAGC 3 cut(s) 187, 207, 272
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 197
BtsIMutI CAGTG 2 cut(s) 115, 232
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 2 cut(s) 17, 125
DdeI CTNAG 2 cut(s) 107, 159
DinI GGCGCC 1 cut(s) 124
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaiI YATR 1 cut(s) 316
FauI CCCGC 2 cut(s) 152, 225
Fnu4HI GCNGC 5 cut(s) 6, 198, 201, 221, 286
Fsp4HI GCNGC 5 cut(s) 6, 198, 201, 221, 286
GlaI GCGC 2 cut(s) 16, 124
GluI GCNGC 5 cut(s) 6, 198, 201, 221, 286
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 2 cut(s) 17, 125
Hin1I GRCGYC 1 cut(s) 123
Hin6I GCGC 2 cut(s) 15, 123
HinP1I GCGC 2 cut(s) 15, 123
HindIII AAGCTT 1 cut(s) 96
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 113, 249
Hpy188I TCNGA 2 cut(s) 162, 295
Hpy8I GTNNAC 2 cut(s) 113, 249
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 3 cut(s) 84, 207, 227
HpyCH4V TGCA 4 cut(s) 203, 223, 268, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 95, 285
HpyF3I CTNAG 2 cut(s) 107, 159
Hsp92I GRCGYC 1 cut(s) 123
HspAI GCGC 2 cut(s) 15, 123
KasI GGCGCC 1 cut(s) 122
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 5 cut(s) 105, 198, 265, 272, 289
Lsp1109I GCAGC 3 cut(s) 187, 207, 272
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 27, 30, 69
MluCI AATT 1 cut(s) 10
Mly113I GGCGCC 1 cut(s) 123
MnlI CCTC 2 cut(s) 12, 100
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 3 cut(s) 200, 220, 279
MvnI CGCG 2 cut(s) 17, 50
MwoI GCNNNNNNNGC 3 cut(s) 14, 95, 285
NarI GGCGCC 1 cut(s) 123
NdeII GATC 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PkrI GCNGC 5 cut(s) 7, 199, 202, 222, 287
PluTI GGCGCC 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 5 cut(s) 6, 198, 201, 221, 286
Sau3AI GATC 1 cut(s) 213
SetI ASST 6 cut(s) 46, 100, 108, 168, 281, 301
SfcI CTRYAG 1 cut(s) 314
SfoI GGCGCC 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 167, 175
SmoI CTYRAG 2 cut(s) 167, 175
Sse9I AATT 1 cut(s) 10
SsiI CCGC 5 cut(s) 5, 48, 145, 198, 218
SspDI GGCGCC 1 cut(s) 122
TaaI ACNGT 3 cut(s) 84, 207, 227
TasI AATT 1 cut(s) 10
TauI GCSGC 2 cut(s) 8, 200
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 115, 232
TseI GCWGC 3 cut(s) 200, 220, 285
TspRI CASTG 2 cut(s) 115, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.