Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

32223724 .. 32226203

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGCTAATTGCGCGAGACGAACCCTACAATTCTCTTCAGCTTCCGCCAAAACCCTATTCTACTCATCCTCGTCTTCACCCTTCGCCTCCAAAGCTTTCAAGCTCAGTGAACTCGCCGGCGCCAAAACCACATCCACTCCTCGATTCGCTACTCAGAAGCTCAAGTTCTCCAGGCTGCCTGTGGAGTTGGCTGCTGCGCAGTCGTTGATCCCCTTGCACAGTGCTACTGCTTCTGCATTGTTCACTTCACTTCTGTCTTTGCACAGTACCAGCTGGGGGTGCCTATCGGAAGGTTTTGCAACCCCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

10.96

Weight (kDa)

10.15

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	201
AccB1I	GGYRCC	2 cut(s)	122, 282
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	5, 48
AclWI	GGATC	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	44, 98, 106, 163, 276
AluI	AGCT	5 cut(s)	44, 98, 106, 163, 276
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	178, 194, 197
AspLEI	GCGC	3 cut(s)	17, 125, 202
AsuHPI	GGTGA	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	122, 282
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	165, 181, 184
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	4 cut(s)	6, 179, 195, 198
BlsI	GCNGC	4 cut(s)	7, 180, 196, 199
Bme1390I	CCNGG	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	124, 284
BmrFI	CCNGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	68, 134
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	121, 170
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	165, 181, 184
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	17
BshNI	GGYRCC	2 cut(s)	122, 282
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	5, 48
BspCNI	CTCAG	2 cut(s)	120, 169
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	124, 284
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	2 cut(s)	122, 282
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	224, 269
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	107, 156
BstF5I	GGATG	2 cut(s)	68, 134
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	3 cut(s)	17, 125, 202
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 95, 282
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	165, 181, 184
BstV2I	GAAGAC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	68, 134
BtsIMutI	CAGTG	2 cut(s)	115, 229
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	3 cut(s)	17, 125, 202
Cfr10I	RCCGGY	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	270
CviJI	RGCY	8 cut(s)	8, 44, 98, 106, 163, 178, 194, 276
CviKI_1	RGCY	8 cut(s)	8, 44, 98, 106, 163, 178, 194, 276
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	107, 156
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	13
FaiI	YATR	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	6, 179, 195, 198
FokI	GGATG	2 cut(s)	55, 121
Fsp4HI	GCNGC	4 cut(s)	6, 179, 195, 198
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	3 cut(s)	16, 124, 201
GluI	GCNGC	4 cut(s)	6, 179, 195, 198
GsaI	CCCAGC	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	3 cut(s)	17, 125, 202
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	3 cut(s)	15, 123, 200
HinP1I	GCGC	3 cut(s)	15, 123, 200
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	113, 246
Hpy188I	TCNGA	2 cut(s)	159, 292
Hpy8I	GTNNAC	2 cut(s)	113, 246
HpyAV	CCTTC	2 cut(s)	94, 287
HpyCH4III	ACNGT	2 cut(s)	224, 269
HpyCH4V	TGCA	4 cut(s)	220, 239, 265, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 95, 282
HpyF3I	CTNAG	2 cut(s)	107, 156
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	3 cut(s)	15, 123, 200
KasI	GGCGCC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	133, 160, 187, 195, 262, 286
Lsp1109I	GCAGC	3 cut(s)	165, 181, 184
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	30, 69
MluCI	AATT	2 cut(s)	10, 32
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	82, 100, 153
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	14, 95, 282
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	1 cut(s)	210
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	124, 284
NsbI	TGCGCA	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	7, 180, 196, 199
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	124, 284
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SatI	GCNGC	4 cut(s)	6, 179, 195, 198
Sau3AI	GATC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	6 cut(s)	46, 100, 108, 165, 278, 298
SfcI	CTRYAG	1 cut(s)	311
SfoI	GGCGCC	1 cut(s)	124
SgrAI	CRCCGGYG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	10, 32
SsiI	CCGC	2 cut(s)	5, 48
SspDI	GGCGCC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	224, 269
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	10, 32
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	2 cut(s)	115, 229
TseI	GCWGC	3 cut(s)	178, 194, 197
TspRI	CASTG	2 cut(s)	115, 229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.