Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005632.1

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

24875 .. 29414

Gene Structure 4540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005632.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcggctaattgtgcgagaagaaccctacaattttcttcagcttccaccaaaaccctgttcaactcttcacagttcgcctccaaaggttttaatctcagtgaactcgctggcgccaaaaccacatctactcctcgattcgctactcacaagctcaagttctcaaggcttcctgtggagttggccgccgcacagtcattgatccctttgcatagtgctactgcttctgccttgttcacttcgctcctgtctttgcacaataccagctgggggtgcctatcagaagcttccgcgaaagcccttttcaactcatcgtcgtcttcaccgttcgcctccaaagcttttaagctcagtgaactcgctggcgccaaaaccacatctacttcccgctttttcgctactcagaagctcaagttctcaaggcttcctgtggagttggccgcagcacagtcattgatcccgctgcacagtgctactgcttctgccttgttcacttcgctcctgtctttgcacaataccagctggggctgcctatcagaaggttttgcaacccctctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.63

Weight (kDa)

10.25

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	113, 273, 365
AccII	CGCG	1 cut(s)	293
AciI	CCGC	7 cut(s)	5, 186, 189, 291, 388, 441, 461
AclWI	GGATC	2 cut(s)	196, 451
AcoI	YGGCCR	2 cut(s)	183, 438
AcuI	CTGAAG	1 cut(s)	24
AcyI	GRCGYC	2 cut(s)	114, 366
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	64, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	8 cut(s)	44, 154, 267, 287, 341, 349, 409, 522
AluI	AGCT	8 cut(s)	44, 154, 267, 287, 341, 349, 409, 522
AlwI	GGATC	2 cut(s)	196, 451
AoxI	GGCC	2 cut(s)	183, 438
ApeKI	GCWGC	3 cut(s)	443, 463, 528
AspLEI	GCGC	2 cut(s)	116, 368
AsuHPI	GGTGA	1 cut(s)	315
BanI	GGYRCC	3 cut(s)	113, 273, 365
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	450, 455, 515
BfmI	CTRYAG	1 cut(s)	557
BfoI	RGCGCY	2 cut(s)	117, 369
BisI	GCNGC	7 cut(s)	6, 186, 189, 441, 444, 464, 529
BlsI	GCNGC	7 cut(s)	7, 187, 190, 442, 445, 465, 530
BmiI	GGNNCC	3 cut(s)	115, 275, 367
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	4 cut(s)	140, 148, 395, 403
BsaHI	GRCGYC	2 cut(s)	114, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	112, 364, 416
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	450, 455, 515
BseYI	CCCAGC	2 cut(s)	267, 522
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	185, 440
BshNI	GGYRCC	3 cut(s)	113, 273, 365
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	2 cut(s)	185, 440
Bsp143I	GATC	2 cut(s)	201, 456
BspACI	CCGC	7 cut(s)	5, 186, 189, 291, 388, 441, 461
BspANI	GGCC	2 cut(s)	185, 440
BspCNI	CTCAG	3 cut(s)	111, 363, 415
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	115, 275, 367
BspPI	GGATC	2 cut(s)	196, 451
BspT107I	GGYRCC	3 cut(s)	113, 273, 365
BssMI	GATC	2 cut(s)	201, 456
BssNI	GRCGYC	2 cut(s)	114, 366
Bst4CI	ACNGT	5 cut(s)	75, 195, 327, 450, 470
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	2 cut(s)	114, 366
BstC8I	GCNNGC	2 cut(s)	112, 364
BstDEI	CTNAG	3 cut(s)	98, 350, 402
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	2 cut(s)	117, 369
BstHHI	GCGC	2 cut(s)	116, 368
BstKTI	GATC	2 cut(s)	204, 459
BstMBI	GATC	2 cut(s)	201, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 273, 338, 528
BstSFI	CTRYAG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	450, 455, 515
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	185, 440
BtsIMutI	CAGTG	3 cut(s)	106, 358, 475
Cac8I	GCNNGC	2 cut(s)	112, 364
CfoI	GCGC	2 cut(s)	116, 368
DdeI	CTNAG	3 cut(s)	98, 350, 402
DinI	GGCGCC	2 cut(s)	115, 367
DpnI	GATC	2 cut(s)	203, 458
DpnII	GATC	2 cut(s)	201, 456
EaeI	YGGCCR	2 cut(s)	183, 438
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	24
EgeI	GGCGCC	2 cut(s)	115, 367
EheI	GGCGCC	2 cut(s)	115, 367
FaiI	YATR	2 cut(s)	213, 559
FauI	CCCGC	2 cut(s)	395, 468
Fnu4HI	GCNGC	7 cut(s)	6, 186, 189, 441, 444, 464, 529
Fsp4HI	GCNGC	7 cut(s)	6, 186, 189, 441, 444, 464, 529
GlaI	GCGC	2 cut(s)	115, 367
GluI	GCNGC	7 cut(s)	6, 186, 189, 441, 444, 464, 529
GsaI	CCCAGC	2 cut(s)	271, 526
HaeII	RGCGCY	2 cut(s)	117, 369
HaeIII	GGCC	2 cut(s)	185, 440
HhaI	GCGC	2 cut(s)	116, 368
Hin1I	GRCGYC	2 cut(s)	114, 366
Hin6I	GCGC	2 cut(s)	114, 366
HinP1I	GCGC	2 cut(s)	114, 366
HindIII	AAGCTT	2 cut(s)	285, 339
HinfI	GANTC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	4 cut(s)	104, 237, 356, 492
Hpy188I	TCNGA	3 cut(s)	283, 405, 538
Hpy8I	GTNNAC	4 cut(s)	104, 237, 356, 492
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	5 cut(s)	75, 195, 327, 450, 470
HpyCH4V	TGCA	5 cut(s)	211, 256, 466, 511, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 273, 338, 528
HpyF3I	CTNAG	3 cut(s)	98, 350, 402
Hsp92I	GRCGYC	2 cut(s)	114, 366
HspAI	GCGC	2 cut(s)	114, 366
KasI	GGCGCC	2 cut(s)	113, 365
Kzo9I	GATC	2 cut(s)	201, 456
LmnI	GCTCC	2 cut(s)	249, 504
Lsp1109I	GCAGC	3 cut(s)	450, 455, 515
MalI	GATC	2 cut(s)	203, 458
MboI	GATC	2 cut(s)	201, 456
MboII	GAAGA	4 cut(s)	30, 33, 60, 312
MluCI	AATT	2 cut(s)	10, 32
Mly113I	GGCGCC	2 cut(s)	114, 366
MnlI	CCTC	3 cut(s)	91, 144, 343
MseI	TTAA	2 cut(s)	93, 345
MspA1I	CMGCKG	3 cut(s)	267, 463, 522
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	14, 273, 338, 528
NarI	GGCGCC	2 cut(s)	114, 366
NdeII	GATC	2 cut(s)	201, 456
NlaIV	GGNNCC	3 cut(s)	115, 275, 367
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	7 cut(s)	7, 187, 190, 442, 445, 465, 530
PluTI	GGCGCC	2 cut(s)	117, 369
PspFI	CCCAGC	2 cut(s)	267, 522
PspN4I	GGNNCC	3 cut(s)	115, 275, 367
PvuII	CAGCTG	2 cut(s)	267, 522
SaqAI	TTAA	2 cut(s)	93, 345
SatI	GCNGC	7 cut(s)	6, 186, 189, 441, 444, 464, 529
Sau3AI	GATC	2 cut(s)	201, 456
SfcI	CTRYAG	1 cut(s)	557
SfoI	GGCGCC	2 cut(s)	115, 367
SmlI	CTYRAG	4 cut(s)	155, 163, 410, 418
SmoI	CTYRAG	4 cut(s)	155, 163, 410, 418
Sse9I	AATT	2 cut(s)	10, 32
SsiI	CCGC	7 cut(s)	5, 186, 189, 291, 388, 441, 461
SspDI	GGCGCC	2 cut(s)	113, 365
TaaI	ACNGT	5 cut(s)	75, 195, 327, 450, 470
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	10, 32
TauI	GCSGC	4 cut(s)	8, 188, 191, 443
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	93, 345
Tru9I	TTAA	2 cut(s)	93, 345
TscAI	CASTG	3 cut(s)	106, 358, 475
TseI	GCWGC	3 cut(s)	443, 463, 528
TspRI	CASTG	3 cut(s)	106, 358, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.