Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

6473660 .. 6476171

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1091900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTGTCAGACTCAGCCCACAAACAATTCTTTGACTGGGAGTCCAGGATCAAAGCTTTGAGCTTTGGAAAAGAGTCGAGGGAAACAGACATGGCGGCTAACTGCGCGAGGCGAACCCTACAATTCTCTTCAGCTTCTGCAAAAACCATTCTGTCCCGTCCACCGTCTTCACCTTTCGCCTCCAATGCTTCTAAGCTGACCGAATTCACTTCCCTCAAGCCTGCTTCTGCTCCTCGACTCGCTGCCCAGAAGCTCAAGTTCTCAAGGCTTCCGGTGGAGTTAGGCGGTGCGCAGTCATTGATCCCGTTGCACAGTGCTACTGCTTCTGCATTGTTCACGTCGCTTCTTTCTTTGCATAATACCAGCTGGGGGTGCCTATCAGAAGGTTTTGCAACTCCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.42

Weight (kDa)

9.83

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	372
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	95, 285
AclWI	GGATC	2 cut(s)	56, 295
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	369
AhdI	GACNNNNNGTC	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	6 cut(s)	56, 63, 134, 196, 253, 366
AluI	AGCT	6 cut(s)	56, 63, 134, 196, 253, 366
AlwI	GGATC	2 cut(s)	56, 295
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	107, 292
AsuHPI	GGTGA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	96, 243
BlsI	GCNGC	2 cut(s)	97, 244
Bme1390I	CCNGG	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	3 cut(s)	200, 239, 247
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	48, 300
BspACI	CCGC	2 cut(s)	95, 285
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	56, 295
BspT107I	GGYRCC	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	48, 300
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	165, 314
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	13, 192
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	107, 292
BstKTI	GATC	2 cut(s)	51, 303
BstMBI	GATC	2 cut(s)	48, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 185, 372
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	2 cut(s)	107, 292
CviAII	CATG	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	13, 192
DpnI	GATC	2 cut(s)	50, 302
DpnII	GATC	2 cut(s)	48, 300
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	133
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 357, 403
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	96, 243
Fsp4HI	GCNGC	2 cut(s)	96, 243
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	2 cut(s)	106, 291
GluI	GCNGC	2 cut(s)	96, 243
GsaI	CCCAGC	1 cut(s)	370
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	2 cut(s)	107, 292
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	2 cut(s)	105, 290
HinP1I	GCGC	2 cut(s)	105, 290
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	4 cut(s)	11, 41, 74, 237
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	161, 336
Hpy188I	TCNGA	2 cut(s)	10, 382
Hpy8I	GTNNAC	2 cut(s)	161, 336
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	165, 314
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	5 cut(s)	140, 310, 329, 355, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 185, 372
HpyF3I	CTNAG	2 cut(s)	13, 192
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	2 cut(s)	105, 290
Kzo9I	GATC	2 cut(s)	48, 300
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	22, 31, 58, 234, 260, 285, 352, 376
Lsp1109I	GCAGC	1 cut(s)	229
MaeII	ACGT	1 cut(s)	338
MalI	GATC	2 cut(s)	50, 302
MboI	GATC	2 cut(s)	48, 300
MboII	GAAGA	2 cut(s)	120, 159
MluCI	AATT	3 cut(s)	26, 122, 203
MlyI	GAGTC	4 cut(s)	5, 50, 83, 231
MnlI	CCTC	5 cut(s)	72, 102, 190, 224, 243
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	104, 185, 372
NdeII	GATC	2 cut(s)	48, 300
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	374
NsbI	TGCGCA	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	97, 244
PleI	GAGTC	4 cut(s)	5, 49, 82, 231
PpsI	GAGTC	4 cut(s)	5, 49, 82, 231
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	366
SatI	GCNGC	2 cut(s)	96, 243
Sau3AI	GATC	2 cut(s)	48, 300
SchI	GAGTC	4 cut(s)	5, 50, 83, 231
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	9 cut(s)	58, 65, 136, 175, 198, 255, 341, 368, 388
SfcI	CTRYAG	1 cut(s)	401
SmlI	CTYRAG	3 cut(s)	215, 254, 262
SmoI	CTYRAG	3 cut(s)	215, 254, 262
Sse9I	AATT	3 cut(s)	26, 122, 203
SsiI	CCGC	2 cut(s)	95, 285
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	165, 314
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	77, 235
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	26, 122, 203
TauI	GCSGC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.