Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006448

Physical Location & Seq

Genomic Coordinates Reverse (-)

63793605 .. 63798847

Gene Structure 5243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGCTAATTGCGCGAGGCGAACCCTACAATTTTCTTCAGCTTCCGCGAAAGCCCTTTTCAACTCATCGTCGTCTTCACCGTTCGCCTCCAAAGCTTTTAAGCTCAGTGAACTCGCTGGCGCCAAAACCACATCTACTCCCCGCTTTTTCGCTACTCAGAAGCTCAAGTTCTCAAGGCTTCCTGTGGAGTTGGCCGCTGCACAGTCATTGATCCCGTTGCACAGTGCTACTGCTTCTGCCTTGTTCACTTCGCTCCTGTCTTTGCACAATACCAGCTGGGGCTGCCTATCAGAAGATGTTTCACGCTTTTTCAACAATGGCCTGACTGGGATGTGCTTTAGCAACTTGGGGGTTTTGCAACCCCTCTATAGCAGGGCCGATGAGCAGCTGTTTCTAGTTACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.59

Weight (kDa)

9.73

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70350
fragaria_vesca	FvH4_4g34460 FvH4_4g34460 FvH4_4g34460
malus_domestica	MD13G1091900.v1.1 MD16G1092500.v1.1
prunus_persica	Prupe.1G253900_v2.0.a1 Prupe.5G015600_v2.0.a1
pyrus_communis	pycom13g07980 pycom16g07890
rosa_chinensis	RchiOBHm_Chr4g0443841 RchiOBHm_Chr4g0443851
rosa_multiflora	Rmu_sc0005632.1_g000007 Rmu_sc0019062.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384410
rosa_rugosa	Rorug04G0347700
rosa_samantha	Rh4AG408000 Rh4AG408100 Rh4BG419000 Rh4BG419100 Rh4CG433100 Rh4CG433200 Rh4DG414200 Rh4DG414300
rosa_wichuraiana	Rw4G035040 Rw4G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	2 cut(s)	17, 50
AciI	CCGC	4 cut(s)	5, 48, 145, 198
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	64, 316
AluBI	AGCT	7 cut(s)	44, 98, 106, 166, 279, 391, 408
AluI	AGCT	7 cut(s)	44, 98, 106, 166, 279, 391, 408
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	3 cut(s)	195, 322, 378
ApeKI	GCWGC	3 cut(s)	200, 285, 388
AspLEI	GCGC	2 cut(s)	17, 125
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	187, 272, 400
BfaI	CTAG	2 cut(s)	398, 409
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	5 cut(s)	6, 198, 201, 286, 389
BlsI	GCNGC	5 cut(s)	7, 199, 202, 287, 390
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	152, 160
BsaHI	GRCGYC	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse1I	ACTGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	121, 173
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	187, 272, 400
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	17, 50
BshFI	GGCC	3 cut(s)	197, 324, 380
BshNI	GGYRCC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	197, 324, 380
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	4 cut(s)	5, 48, 145, 198
BspANI	GGCC	3 cut(s)	197, 324, 380
BspCNI	CTCAG	2 cut(s)	120, 172
BspFNI	CGCG	2 cut(s)	17, 50
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	84, 207, 227
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	107, 159
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	17, 50
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	17, 125
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
BstSFI	CTRYAG	1 cut(s)	370
BstUI	CGCG	2 cut(s)	17, 50
BstV1I	GCAGC	3 cut(s)	187, 272, 400
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	197, 324, 380
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	115, 232
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	2 cut(s)	17, 125
Cfr13I	GGNCC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	107, 159
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaiI	YATR	1 cut(s)	372
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	6, 198, 201, 286, 389
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	5 cut(s)	6, 198, 201, 286, 389
FspBI	CTAG	2 cut(s)	398, 409
GlaI	GCGC	2 cut(s)	16, 124
GluI	GCNGC	5 cut(s)	6, 198, 201, 286, 389
GsaI	CCCAGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	197, 324, 380
HhaI	GCGC	2 cut(s)	17, 125
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	15, 123
HinP1I	GCGC	2 cut(s)	15, 123
HindIII	AAGCTT	1 cut(s)	96
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	113, 249
Hpy188I	TCNGA	2 cut(s)	162, 295
Hpy8I	GTNNAC	2 cut(s)	113, 249
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	84, 207, 227
HpyCH4V	TGCA	4 cut(s)	203, 223, 268, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
HpyF3I	CTNAG	2 cut(s)	107, 159
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	2 cut(s)	15, 123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	105, 198, 265, 272, 289, 315, 338, 361
Lsp1109I	GCAGC	3 cut(s)	187, 272, 400
MaeI	CTAG	2 cut(s)	398, 409
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	30, 69, 308
MluCI	AATT	2 cut(s)	10, 32
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	12, 100, 377
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	200, 279, 391
MvnI	CGCG	2 cut(s)	17, 50
MwoI	GCNNNNNNNGC	3 cut(s)	14, 95, 285
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	7, 199, 202, 287, 390
PluTI	GGCGCC	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	378
PvuII	CAGCTG	2 cut(s)	279, 391
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	5 cut(s)	6, 198, 201, 286, 389
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	378
SetI	ASST	7 cut(s)	46, 100, 108, 168, 281, 393, 410
SfcI	CTRYAG	1 cut(s)	370
SfoI	GGCGCC	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	167, 175
SmoI	CTYRAG	2 cut(s)	167, 175
Sse9I	AATT	2 cut(s)	10, 32
SsiI	CCGC	4 cut(s)	5, 48, 145, 198
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	398, 409
TaaI	ACNGT	3 cut(s)	84, 207, 227
TasI	AATT	2 cut(s)	10, 32
TauI	GCSGC	2 cut(s)	8, 200
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	115, 232
TseI	GCWGC	3 cut(s)	200, 285, 388
TspRI	CASTG	2 cut(s)	115, 232
XspI	CTAG	2 cut(s)	398, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.