pycom13g07970

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011337
Physical Location & Seq
Reverse (-)
5280909 .. 5281784
876 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07970.1

Sequence Viewer

Length: 780 bp
ATGCACTCAGAGAGGCTTCAGCTACCGATACATACCTATGAAGATCGATCTCTCAAGATGTTTTCAAACTTATGCAGAACAGCTAGAGCAGATGCCCCATCAGCCTGCTTTGATAAATTCCTCGAATTCCATCACCAAATTGTCCAATCAGTAAATGATATGGTGTCGATACAAGCGGCTACTTCAGCTTCTGAAATGACTCAGAGTACTCCAAAAGTTAAGCAGCAGAAAGATAAAGATCAAGATGATGAAGAATTTTCCGTCCTACATGAAATTGTTCAAAACTCCGTGAACTCTAAACTAAACTTGTCGAAAAGAAGGTGCGCATTGTACAAATCAGTTGCAGCCGTTCCTGAAAGAAGCGAGCAGAAAACGACAACGTTTGAGAAGCACCTGAGAAGCTCTACTCATCAAAAGCCGAAAGCACCATCCACTCCGCTTGGAAAGCTGAGTCTTGAAACCATTGGTGAAAACGACGAAAACAAGAAGCCGGCTTCTGCTAGTTTAAGCAGCTTAAGCAACACAATCAGGTTGAGTAAGCAGATCGAAACGGAAGCTGGGAACTGGTTTATGGAGTTTATTGAGATGGCATTGGAGACGGGGATGAAGATATCAAAAGGCACGACAACGGATAAAGATATCCGAAAAGTGCCTCAATCTGTCATTCTCAGATTGATTAATTGGGTGGAAGTAGAACAGTGTGACAGCAGCAAGCGGCCTGTTCATCCGAAAGCAGCGCAGTTGGCTCGAAAGTTGAGGATCAAAGTGAAGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

260

Amino Acids

29.29

Weight (kDa)

9.27

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 16 - 209 1.6e-13 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23790 AT1G70340
fragaria_vesca FvH4_4g34410 FvH4_4g34410
malus_domestica MD13G1091800.v1.1 MD16G1092400.v1.1
prunus_persica Prupe.1G254000_v2.0.a1
pyrus_communis pycom13g07970 pycom16g07880
rosa_chinensis RchiOBHm_Chr4g0443831
rosa_laevigata RLG00000005884
rosa_multiflora Rmu_sc0005632.1_g000006 Rmu_sc0026423.1_g000001
rosa_roxburghii Rroxscaffold_5G00384400
rosa_rugosa Rorug04G0347700
rosa_samantha Rh4AG407900 Rh4BG418900 Rh4CG433000 Rh4DG414100
rosa_wichuraiana Rw4G035030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 325
AciI CCGC 3 cut(s) 176, 437, 715
AclI AACGTT 1 cut(s) 380
AclWI GGATC 1 cut(s) 767
AcsI RAATTY 3 cut(s) 116, 125, 254
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 208, 332
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 3 cut(s) 66, 281, 458
AluBI AGCT 7 cut(s) 22, 83, 188, 402, 448, 513, 557
AluI AGCT 7 cut(s) 22, 83, 188, 402, 448, 513, 557
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 716
ApeKI GCWGC 5 cut(s) 223, 344, 510, 708, 734
ApoI RAATTY 3 cut(s) 116, 125, 254
AseI ATTAAT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 2 cut(s) 326, 739
AsuHPI GGTGA 2 cut(s) 125, 479
BbvI GCAGC 5 cut(s) 235, 356, 522, 720, 746
BccI CCATC 4 cut(s) 106, 138, 436, 580
BceAI ACGGC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 2 cut(s) 84, 501
BfrI CTTAAG 1 cut(s) 514
BisI GCNGC 7 cut(s) 177, 224, 345, 511, 709, 716, 735
BlsI GCNGC 7 cut(s) 178, 225, 346, 512, 710, 717, 736
BmcAI AGTACT 1 cut(s) 208
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 46
BseGI GGATG 3 cut(s) 428, 609, 724
BseJI GATNNNNATC 1 cut(s) 237
BseMII CTCAG 5 cut(s) 21, 215, 386, 440, 682
BseNI ACTGG 1 cut(s) 569
BseXI GCAGC 5 cut(s) 235, 356, 522, 720, 746
BseYI CCCAGC 1 cut(s) 557
BshFI GGCC 1 cut(s) 718
BshVI ATCGAT 1 cut(s) 46
BsiSI CCGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 590
BsmBI CGTCTC 1 cut(s) 590
BsnI GGCC 1 cut(s) 718
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 5 cut(s) 43, 47, 238, 543, 759
BspACI CCGC 3 cut(s) 176, 437, 715
BspANI GGCC 1 cut(s) 718
BspCNI CTCAG 5 cut(s) 20, 214, 387, 441, 681
BspDI ATCGAT 1 cut(s) 46
BspPI GGATC 1 cut(s) 767
BspTI CTTAAG 1 cut(s) 514
BsrFI RCCGGY 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 569
BssAI RCCGGY 1 cut(s) 490
BssMI GATC 5 cut(s) 43, 47, 238, 543, 759
Bst4CI ACNGT 1 cut(s) 699
BstAFI CTTAAG 1 cut(s) 514
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 4 cut(s) 106, 365, 492, 713
BstDEI CTNAG 5 cut(s) 7, 201, 395, 449, 668
BstF5I GGATG 3 cut(s) 428, 609, 724
BstHHI GCGC 2 cut(s) 326, 739
BstKTI GATC 5 cut(s) 46, 50, 241, 546, 762
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 5 cut(s) 43, 47, 238, 543, 759
BstMWI GCNNNNNNNGC 5 cut(s) 101, 185, 445, 516, 743
BstV1I GCAGC 5 cut(s) 235, 356, 522, 720, 746
Bsu15I ATCGAT 1 cut(s) 46
BsuRI GGCC 1 cut(s) 718
BsuTUI ATCGAT 1 cut(s) 46
BtsCI GGATG 3 cut(s) 428, 609, 724
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 4 cut(s) 106, 365, 492, 713
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 2 cut(s) 326, 739
Cfr10I RCCGGY 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 46
Csp6I GTAC 2 cut(s) 207, 331
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 1 cut(s) 269
CviQI GTAC 2 cut(s) 207, 331
DdeI CTNAG 5 cut(s) 7, 201, 395, 449, 668
DpnI GATC 5 cut(s) 45, 49, 240, 545, 761
DpnII GATC 5 cut(s) 43, 47, 238, 543, 759
Eco32I GATATC 2 cut(s) 612, 640
Eco57I CTGAAG 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 125
EcoRV GATATC 2 cut(s) 612, 640
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 1 cut(s) 272
FaiI YATR 6 cut(s) 33, 39, 73, 161, 270, 572
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 7 cut(s) 177, 224, 345, 511, 709, 716, 735
FokI GGATG 3 cut(s) 415, 616, 711
Fsp4HI GCNGC 7 cut(s) 177, 224, 345, 511, 709, 716, 735
FspAI RTGCGCAY 1 cut(s) 325
FspBI CTAG 2 cut(s) 84, 501
FspI TGCGCA 1 cut(s) 325
GlaI GCGC 2 cut(s) 325, 738
GluI GCNGC 7 cut(s) 177, 224, 345, 511, 709, 716, 735
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 1 cut(s) 718
HapII CCGG 1 cut(s) 491
HhaI GCGC 2 cut(s) 326, 739
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 2 cut(s) 324, 737
HinP1I GCGC 2 cut(s) 324, 737
HinfI GANTC 3 cut(s) 199, 451, 772
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 125, 479
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 6 cut(s) 10, 193, 204, 644, 671, 729
Hpy188III TCNNGA 4 cut(s) 55, 242, 353, 455
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 699
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 4, 75, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 185, 445, 516, 743
HpyF3I CTNAG 5 cut(s) 7, 201, 395, 449, 668
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 2 cut(s) 324, 737
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Kzo9I GATC 5 cut(s) 43, 47, 238, 543, 759
LpnPI CCDG 8 cut(s) 118, 366, 407, 504, 514, 543, 550, 732
Lsp1109I GCAGC 5 cut(s) 235, 356, 522, 720, 746
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 84, 501
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 701
MalI GATC 5 cut(s) 45, 49, 240, 545, 761
MboI GATC 5 cut(s) 43, 47, 238, 543, 759
MboII GAAGA 3 cut(s) 53, 263, 619
MluCI AATT 6 cut(s) 116, 125, 138, 254, 273, 679
MlyI GAGTC 2 cut(s) 193, 460
MnlI CCTC 4 cut(s) 6, 131, 663, 750
MroNI GCCGGC 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 4 cut(s) 219, 506, 515, 678
MslI CAYNNNNRTG 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 101, 185, 445, 516, 743
NaeI GCCGGC 1 cut(s) 492
NdeII GATC 5 cut(s) 43, 47, 238, 543, 759
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 701
NsbI TGCGCA 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 772
PkrI GCNGC 7 cut(s) 178, 225, 346, 512, 710, 717, 736
PleI GAGTC 2 cut(s) 193, 459
PpsI GAGTC 2 cut(s) 193, 459
PshBI ATTAAT 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 557
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 208, 332
RsaNI GTAC 2 cut(s) 207, 331
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 4 cut(s) 219, 506, 515, 678
SatI GCNGC 7 cut(s) 177, 224, 345, 511, 709, 716, 735
Sau3AI GATC 5 cut(s) 43, 47, 238, 543, 759
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 2 cut(s) 193, 460
SfaNI GCATC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 53, 514
SmoI CTYRAG 2 cut(s) 53, 514
Sse9I AATT 6 cut(s) 116, 125, 138, 254, 273, 679
SsiI CCGC 3 cut(s) 176, 437, 715
SspMI CTAG 2 cut(s) 84, 501
TaaI ACNGT 1 cut(s) 699
TaiI ACGT 1 cut(s) 383
TaqI TCGA 6 cut(s) 46, 123, 167, 311, 546, 748
TasI AATT 6 cut(s) 116, 125, 138, 254, 273, 679
TatI WGTACW 2 cut(s) 206, 330
TauI GCSGC 2 cut(s) 179, 718
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 4 cut(s) 219, 506, 515, 678
Tru9I TTAA 4 cut(s) 219, 506, 515, 678
TscAI CASTG 1 cut(s) 704
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 5 cut(s) 223, 344, 510, 708, 734
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 5 cut(s) 54, 264, 285, 620, 713
TspGWI ACGGA 4 cut(s) 250, 277, 566, 644
TspRI CASTG 1 cut(s) 704
Vha464I CTTAAG 1 cut(s) 514
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 3 cut(s) 116, 125, 254
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 2 cut(s) 84, 501
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.