AT1G24540

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
8699650 .. 8701458
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24540.1

Sequence Viewer

Length: 1569 bp
ATGAACGTGTTGATTTCTGCGGTGGTATGGGTATACACTCACTTAAGGTTATCAGACGTAGCTTTAGCCCTAGTAGGGCTTTTTCTTCTTAGTTACTTGCGTGAGAAGTTAGTGAGCAAAGGTGGGCCAGTGATGTGGCCAGTGTTGGGAATCATACCGATGTTGGCGCTAAACAAACACGATCTGTTTACTTGGTGCACCAGATGCGTGGTCAGATCTGGTGGGACGTTTCATTACCGAGGAATTTGGTTCGGTGGGGCTTACGGAATCATGACCGCAGATCCTGCAAACGTCGAGCACATTCTCAAAACCAATTTCAAGAACTATCCAAAGGGTGCGTTTTATAGAGAGAGGTTTCGTGATCTTCTTGAAGATGGGATCTTTAACGCTGATGATGAGCTTTGGAAAGAAGAGAGACGCGTGGCTAAAACCGAGATGCATTCTTCTCGTTTCTTGGAGCACACGTTTACTACGATGAGAGATCTGGTGGACCAGAAGCTGGTGCCGCTGATGGAGAACTTGTCTACTTCTAAGAGAGTCTTTGATCTACAAGATTTGCTCCTGCGTTTTACCTTTGATAACATATGTATATCGGCCTTTGGTGTTTACCCAGGATCGTTAGAGACAGGTTTACCGGAGATTCCTTTCGCTAAGGCTTTTGAGGACGCCACGGAGTATACACTTGCAAGGTTTCTGATACCTCCTTTTGTGTGGAAGCCAATGAGGTTTCTAGGGATTGGGTATGAAAGAAAGCTGAATAATGCAGTTAGAATAGTTCACGCGTTTGCGAATAAGACAGTGAGAGAGAGGAGGAACAAGATGAGGAAACTCGGGAACTTGAACGATTACGCTGATCTCTTGTCACGCCTTATGCAGAGAGAGTACGAGAAAGAAGAAGATACCACTAGAGGAAACTACTTTTCTGACAAGTACTTCAGAGAGTTCTGCACAAGTTTCATAATCGCGGGTCGAGACACTACATCAGTGGCCCTCGTGTGGTTCTTCTGGCTAGTTCAGAAACATCCTGAAGTCGAGAAGAGAATCCTAAGAGAAATCAGAGAGATTAAAAGGAAACTTACAACACAAGAAACTGAAGATCAGTTTGAGGCTGAAGATTTCAGGGAAATGGTGTATCTGCAAGCTGCTTTAACAGAGTCACTGAGGCTATACCCTTCCGTGCCAATGGAGATGAAACAAGCTTTAGAAGACGATGTGTTACCCGATGGGACAAGGGTGAAGAAAGGCGCTAGGATTCACTACTCAGTCTACTCTATGGGGAGAATAGAATCAATTTGGGGAAAAGACTGGGAAGAGTTCAAACCAGAGAGATGGATCAAAGAAGGAAGAATTGTGAGCGAAGATCAGTTCAAGTATGTAGTGTTCAACGGAGGTCCAAGGCTGTGTGTTGGGAAGAAGTTTGCGTATACACAAATGAAAATGGTGGCTGCAGCGATCTTGATGAGGTATTCAGTAAAAGTCGTCCAAGGACAAGAGATTGTTCCCAAACTCACCACCACATTGTACATGAAGAACGGTATGAATGTTATGCTCCAGCCTCGTGACTGGTAA

Protein Analysis

522

Amino Acids

61.06

Weight (kDa)

9.09

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 42 - 506 1.2e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13140 AT1G13140 AT1G13150 AT1G24540 AT3G26125
fragaria_vesca FvH4_4g25350
malus_domestica MD13G1104800.v1.1
prunus_persica Prupe.1G241700_v2.0.a1
pyrus_communis pycom13g09100
rosa_chinensis RchiOBHm_Chr4g0432631
rosa_laevigata RLG00000006828
rosa_multiflora Rmu_sc0004612.1_g000006
rosa_roxburghii Rroxscaffold_5G00374100
rosa_rugosa Rorug04G0260900.1
rosa_samantha Rh4BG323500 Rh4CG338600 Rh4DG319100
rosa_wichuraiana Rw4G027440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 5 cut(s) 33, 524, 677, 1266, 1424
AccII CGCG 3 cut(s) 420, 782, 965
AciI CCGC 4 cut(s) 20, 276, 506, 965
AclWI GGATC 4 cut(s) 275, 386, 622, 1340
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 4 cut(s) 919, 1047, 1113, 1131
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 3 cut(s) 884, 932, 1523
AfiI CCNNNNNNNGG 4 cut(s) 75, 146, 499, 996
AflII CTTAAG 1 cut(s) 43
AflIII ACRYGT 4 cut(s) 6, 418, 462, 780
AgsI TTSAA 6 cut(s) 319, 371, 841, 1318, 1369, 1384
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 6 cut(s) 62, 400, 499, 754, 1142, 1199
AluI AGCT 6 cut(s) 62, 400, 499, 754, 1142, 1199
Alw21I GWGCWC 3 cut(s) 200, 300, 462
Alw26I GTCTC 3 cut(s) 409, 617, 966
Alw44I GTGCAC 1 cut(s) 196
AlwI GGATC 4 cut(s) 275, 386, 622, 1340
AlwNI CAGNNNCTG 2 cut(s) 284, 499
Ama87I CYCGRG 1 cut(s) 830
AoxI GGCC 4 cut(s) 125, 137, 594, 987
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 1142, 1445, 1448
ApoI RAATTY 1 cut(s) 243
AspLEI GCGC 2 cut(s) 169, 1247
AspS9I GGNCC 4 cut(s) 125, 490, 988, 1391
AsuHPI GGTGA 2 cut(s) 1246, 1501
AvaI CYCGRG 1 cut(s) 830
AvaII GGWCC 2 cut(s) 490, 1391
BaeGI GKGCMC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 502
BauI CACGAG 2 cut(s) 992, 1557
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 3 cut(s) 200, 300, 462
BbvI GCAGC 3 cut(s) 1129, 1432, 1460
BccI CCATC 4 cut(s) 368, 505, 1217, 1323
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 612
BcoDI GTCTC 3 cut(s) 409, 617, 966
BfaI CTAG 5 cut(s) 71, 731, 906, 1010, 1248
BfmI CTRYAG 1 cut(s) 1446
BfoI RGCGCY 2 cut(s) 170, 1248
BfrI CTTAAG 1 cut(s) 43
BglII AGATCT 2 cut(s) 215, 481
BisI GCNGC 4 cut(s) 506, 1143, 1446, 1449
BlsI GCNGC 4 cut(s) 507, 1144, 1447, 1450
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 1 cut(s) 612
Bme18I GGWCC 2 cut(s) 490, 1391
BmeT110I CYCGRG 1 cut(s) 830
BmgT120I GGNCC 4 cut(s) 125, 490, 988, 1391
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 612
BmrI ACTGGG 1 cut(s) 1315
BmsI GCATC 2 cut(s) 194, 426
BmuI ACTGGG 1 cut(s) 1315
BpiI GAAGAC 1 cut(s) 1212
BpmI CTGGAG 1 cut(s) 1535
Bpu10I CCTNAGC 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 238, 610, 669, 1394, 1483
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 506, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 146, 499, 996
Bse1I ACTGG 4 cut(s) 128, 140, 1310, 1568
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 238, 610, 669, 1394, 1483
BseGI GGATG 1 cut(s) 1021
BseLI CCNNNNNNNGG 4 cut(s) 75, 146, 499, 996
BseMII CTCAG 2 cut(s) 1151, 1275
BseNI ACTGG 4 cut(s) 128, 140, 1310, 1568
BseRI GAGGAG 1 cut(s) 823
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 3 cut(s) 1129, 1432, 1460
BsgI GTGCAG 1 cut(s) 931
Bsh1236I CGCG 3 cut(s) 420, 782, 965
BshFI GGCC 4 cut(s) 127, 139, 596, 989
BshNI GGYRCC 1 cut(s) 502
BsiHKAI GWGCWC 3 cut(s) 200, 300, 462
BsiHKCI CYCGRG 1 cut(s) 830
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 2 cut(s) 238, 1240
BslI CCNNNNNNNGG 4 cut(s) 75, 146, 499, 996
BsmAI GTCTC 3 cut(s) 409, 617, 966
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 2 cut(s) 238, 1240
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 4 cut(s) 127, 139, 596, 989
BsoBI CYCGRG 1 cut(s) 830
Bsp1286I GDGCHC 3 cut(s) 200, 300, 462
Bsp1407I TGTACA 1 cut(s) 1521
BspACI CCGC 4 cut(s) 20, 276, 506, 965
BspANI GGCC 4 cut(s) 127, 139, 596, 989
BspCNI CTCAG 2 cut(s) 1152, 1274
BspFNI CGCG 3 cut(s) 420, 782, 965
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 1450
BspPI GGATC 4 cut(s) 275, 386, 622, 1340
BspT107I GGYRCC 1 cut(s) 502
BspTI CTTAAG 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 1521
BsrI ACTGG 4 cut(s) 128, 140, 1310, 1568
BssECI CCNNGG 5 cut(s) 238, 610, 669, 1394, 1483
BssNAI GTATAC 3 cut(s) 34, 678, 1425
BssNI GRCGYC 1 cut(s) 666
BssSI CACGAG 2 cut(s) 992, 1557
BssT1I CCWWGG 2 cut(s) 1394, 1483
Bst1107I GTATAC 3 cut(s) 34, 678, 1425
Bst2BI CACGAG 2 cut(s) 992, 1557
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 799, 1535
Bst6I CTCTTC 3 cut(s) 405, 1031, 1305
BstACI GRCGYC 1 cut(s) 666
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 2 cut(s) 204, 284
BstAUI TGTACA 1 cut(s) 1521
BstC8I GCNNGC 1 cut(s) 1140
BstDEI CTNAG 6 cut(s) 89, 531, 651, 1046, 1160, 1261
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 3 cut(s) 420, 782, 965
BstH2I RGCGCY 2 cut(s) 170, 1248
BstHHI GCGC 2 cut(s) 169, 1247
BstMAI GTCTC 3 cut(s) 409, 617, 966
BstMWI GCNNNNNNNGC 3 cut(s) 204, 284, 505
BstNI CCWGG 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 1 cut(s) 1446
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 3 cut(s) 420, 782, 965
BstV1I GCAGC 3 cut(s) 1129, 1432, 1460
BstV2I GAAGAC 1 cut(s) 1212
BstX2I RGATCY 4 cut(s) 215, 280, 378, 481
BstXI CCANNNNNNTGG 3 cut(s) 135, 208, 1329
BstYI RGATCY 4 cut(s) 215, 280, 378, 481
BstZ17I GTATAC 3 cut(s) 34, 678, 1425
BsuRI GGCC 4 cut(s) 127, 139, 596, 989
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 1 cut(s) 1021
BtsIMutI CAGTG 5 cut(s) 135, 147, 804, 990, 1157
Cac8I GCNNGC 1 cut(s) 1140
CaiI CAGNNNCTG 2 cut(s) 284, 499
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 169, 1247
Cfr13I GGNCC 4 cut(s) 125, 490, 988, 1391
CseI GACGC 2 cut(s) 426, 674
Csp6I GTAC 3 cut(s) 883, 931, 1522
CviAII CATG 2 cut(s) 271, 1525
CviQI GTAC 3 cut(s) 883, 931, 1522
DdeI CTNAG 6 cut(s) 89, 531, 651, 1046, 1160, 1261
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 3 cut(s) 405, 1031, 1305
EarI CTCTTC 3 cut(s) 405, 1031, 1305
Eco130I CCWWGG 2 cut(s) 1394, 1483
Eco47I GGWCC 2 cut(s) 490, 1391
Eco57I CTGAAG 4 cut(s) 919, 1047, 1113, 1131
Eco88I CYCGRG 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 1394, 1483
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 1394, 1483
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 2 cut(s) 274, 1528
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 2 cut(s) 238, 1240
FatI CATG 2 cut(s) 270, 1524
FauI CCCGC 1 cut(s) 958
FauNDI CATATG 1 cut(s) 584
FblI GTMKAC 5 cut(s) 33, 524, 677, 1266, 1424
Fnu4HI GCNGC 4 cut(s) 506, 1143, 1446, 1449
FokI GGATG 1 cut(s) 1008
Fsp4HI GCNGC 4 cut(s) 506, 1143, 1446, 1449
FspBI CTAG 5 cut(s) 71, 731, 906, 1010, 1248
GlaI GCGC 2 cut(s) 168, 1246
GluI GCNGC 4 cut(s) 506, 1143, 1446, 1449
GsuI CTGGAG 1 cut(s) 1535
HaeII RGCGCY 2 cut(s) 170, 1248
HaeIII GGCC 4 cut(s) 127, 139, 596, 989
HapII CCGG 1 cut(s) 635
HgaI GACGC 2 cut(s) 426, 674
HhaI GCGC 2 cut(s) 169, 1247
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 2 cut(s) 274, 1528
Hin6I GCGC 2 cut(s) 167, 1245
HinP1I GCGC 2 cut(s) 167, 1245
HindIII AAGCTT 1 cut(s) 1197
HinfI GANTC 8 cut(s) 150, 267, 537, 640, 1041, 1154, 1252, 1286
HpaII CCGG 1 cut(s) 635
HphI GGTGA 2 cut(s) 1246, 1501
Hpy188I TCNGA 7 cut(s) 55, 215, 696, 925, 938, 1017, 1058
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 1182, 1334
HpyCH4III ACNGT 2 cut(s) 799, 1535
HpyCH4IV ACGT 5 cut(s) 6, 57, 227, 291, 464
HpyCH4V TGCA 9 cut(s) 198, 287, 439, 686, 764, 874, 948, 1138, 1448
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 284, 505
HpyF3I CTNAG 6 cut(s) 89, 531, 651, 1046, 1160, 1261
HpySE526I ACGT 5 cut(s) 6, 57, 227, 291, 464
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 2 cut(s) 274, 1528
HspAI GCGC 2 cut(s) 167, 1245
LmnI GCTCC 3 cut(s) 457, 564, 1554
Lsp1109I GCAGC 3 cut(s) 1129, 1432, 1460
LweI GCATC 2 cut(s) 194, 426
MaeI CTAG 5 cut(s) 71, 731, 906, 1010, 1248
MaeII ACGT 5 cut(s) 6, 57, 227, 291, 464
MaeIII GTNAC 5 cut(s) 92, 861, 1155, 1215, 1559
MflI RGATCY 4 cut(s) 215, 280, 378, 481
MhlI GDGCHC 3 cut(s) 200, 300, 462
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 4 cut(s) 243, 313, 1290, 1347
MluI ACGCGT 2 cut(s) 418, 780
MluNI TGGCCA 1 cut(s) 139
MlyI GAGTC 2 cut(s) 546, 1163
Mox20I TGGCCA 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 441
MscI TGGCCA 1 cut(s) 139
MseI TTAA 4 cut(s) 44, 384, 1065, 1148
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 508
MspCI CTTAAG 1 cut(s) 43
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 3 cut(s) 420, 782, 965
MwoI GCNNNNNNNGC 3 cut(s) 204, 284, 505
NdeI CATATG 1 cut(s) 584
NlaIII CATG 2 cut(s) 274, 1528
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 3 cut(s) 861, 1155, 1559
NsiI ATGCAT 1 cut(s) 441
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 6 cut(s) 150, 267, 640, 1041, 1252, 1286
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 4 cut(s) 507, 1144, 1447, 1450
PleI GAGTC 2 cut(s) 545, 1162
PpsI GAGTC 2 cut(s) 545, 1162
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 4 cut(s) 125, 490, 988, 1391
PsrI GAACNNNNNNTAC 2 cut(s) 1364, 1396
PstI CTGCAG 1 cut(s) 1450
PstNI CAGNNNCTG 2 cut(s) 284, 499
PsuI RGATCY 4 cut(s) 215, 280, 378, 481
RsaI GTAC 3 cut(s) 884, 932, 1523
RsaNI GTAC 3 cut(s) 883, 931, 1522
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 4 cut(s) 44, 384, 1065, 1148
SatI GCNGC 4 cut(s) 506, 1143, 1446, 1449
Sau96I GGNCC 4 cut(s) 125, 490, 988, 1391
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 2 cut(s) 546, 1163
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 3 cut(s) 200, 300, 462
SfaNI GCATC 2 cut(s) 194, 426
SfcI CTRYAG 1 cut(s) 1446
SinI GGWCC 2 cut(s) 490, 1391
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 243, 313, 1290, 1347
SsiI CCGC 4 cut(s) 20, 276, 506, 965
SspMI CTAG 5 cut(s) 71, 731, 906, 1010, 1248
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 2 cut(s) 1394, 1483
TaaI ACNGT 2 cut(s) 799, 1535
TaiI ACGT 5 cut(s) 9, 60, 230, 294, 467
TaqI TCGA 3 cut(s) 294, 970, 1032
TasI AATT 4 cut(s) 243, 313, 1290, 1347
TatI WGTACW 2 cut(s) 930, 1521
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 6 cut(s) 150, 267, 640, 1041, 1252, 1286
Tru1I TTAA 4 cut(s) 44, 384, 1065, 1148
Tru9I TTAA 4 cut(s) 44, 384, 1065, 1148
TscAI CASTG 5 cut(s) 135, 147, 804, 990, 1164
TseFI GTSAC 3 cut(s) 861, 1155, 1559
TseI GCWGC 3 cut(s) 1142, 1445, 1448
Tsp45I GTSAC 3 cut(s) 861, 1155, 1559
TspDTI ATGAA 8 cut(s) 17, 221, 759, 946, 1205, 1448, 1541, 1553
TspGWI ACGGA 4 cut(s) 279, 686, 1165, 1401
TspRI CASTG 5 cut(s) 135, 147, 804, 990, 1164
Van91I CCANNNNNTGG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 490, 1391
XapI RAATTY 1 cut(s) 243
XmiI GTMKAC 5 cut(s) 33, 524, 677, 1266, 1424
XspI CTAG 5 cut(s) 71, 731, 906, 1010, 1248
ZrmI AGTACT 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.