Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013182

Physical Location & Seq

Genomic Coordinates Forward (+)

59831186 .. 59832730

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG338600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGATTCTGAACTGGCTACATTTCTGGGATGTAGCACTTGCCTTGATGGGCCTGTTCATATTTAGTTGCTTGCTTCAGAGGTTCACCAACAAAAATGGTCCAATGTTATGGCCAGTTTTGGGGATTGCACCCTCCATATTTCTAAATGCACACACCATCTATGATTGGGCTACCATGGCTCTGATCAAAGCAGGGGGAACATTCCACTACAAAGGAGTGTGGTTCGGCGGGTCCCACGGGATCATAACACTTGATCCTTCAAACATTGAGTACATGCTCAAAACAAGGTTCAGCAACTTCCCAAAAGGCAAGTATTACAGGGAGAGGTTTCATGATTTGCTTGGGGATGGAATTTTCAATGCAGACAATGAGTTGTGGAAGGAGCAGAGGAGGTTGGCAACTTCAGTAATGCATTCGGGTCGTTTTGTGGAGTATTCGTTTTTCTCCATGCAAGAGTTGGTGCACAAGAAGTTGTTGAAGTTGATGGAGAAAGTGGTAGTATCAGGGTGTAGCATTGATCTTCATGAAGTGCTTCTTCGGTTTACTTTTGACAACATTTGCTCGGTAGCTCTTGGTGCTGATTCAGGGTGTTTGGACCTTGATTTGCCTCAAAGTCCTTTTGTGAAAGCCTTTGAAGAAGCCACGGAGCTCACTATGTTCAGATTCATGGTGCCACCTTTTGTGTGGAAGCCTATGAAGTTGTTTGGAATTGGGTTCGAAAAGAGGCTCAAGGAAGCAACTAAAATAGTGCATTATTTTGCTGAAAATACGGTGAAGGATCGAAGGGGAGAATTGAAGAGGCTCGGTAGCTTAAAAGATCGTTTTGATCTATTGTCAAGGCTCATGGACAGTGAAAAGCAACATTTTTCGGATAAGTTTCTAAGCGATTTCTGCATAAGTTTCATTTTGGCTGGAAGGGACACAAGCTCTGTAGGATTGGCATGGTTTTTTTGGTTGGTACAAAAGCATCCTGAAGTGGAAAACAAAATCCTCAAAGAAATCAATGAAATTTTAGGCCAGCGCCAATGTACCGAAAAAGAATCACCAGATGGTGATACTGTTTTTACAGTGGAAGAACTCAAGAAGATGGTCTATTTACAAGCAGTGTTGTCAGAATCTTTAAGGCTTTACCCACCAGTGCCAATTGACATCAAAGAGGTCGTAGAAGATGATGTGTTTCCTGATGGTAGTATCGTCAAAAAGGGTGCTCGAGTTCTCTACTGCATTTACTCCATGGCTCGAATGGAGTCGATTTGGGGACAGGATTGCTTGCAGTTCAAGCCTGAAAGATGGATTAACAATGATGGTGAGCTTGTCAATGAGAACCAATTCAAATATGCTGTCTTTAATGGGGGTCCAAGGTTTTGTTTGGGGAAGAAGTTTGCTTACATGCAAATGAAAGTGGTGGCTGCAGCCACTCTGCTCAGGTATGAAGTTAAGGTTGTTGAAGGTCAAAATGTTGTTCCAAAGATGACAACCACACTATACATGCAGAATGGGCTGCTGGTGAGTCTTAAGCCTAGGTTGGTGACTACTATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0012505 GO:0016053 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046394 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04144 ko04217 map00073 map04144 map04217

Pfam Domains

Protein Families

p450

Protein Analysis

514

Amino Acids

59.16

Weight (kDa)

8.39

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	72 - 494	5.2e-77	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13140 AT1G13140 AT1G13150 AT1G24540 AT3G26125
fragaria_vesca	FvH4_4g25350
malus_domestica	MD13G1104800.v1.1
prunus_persica	Prupe.1G241700_v2.0.a1
pyrus_communis	pycom13g09100
rosa_chinensis	RchiOBHm_Chr4g0432631
rosa_laevigata	RLG00000006828
rosa_multiflora	Rmu_sc0004612.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374100
rosa_rugosa	Rorug04G0260900.1
rosa_samantha	Rh4BG323500 Rh4CG338600 Rh4DG319100
rosa_wichuraiana	Rw4G027440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	3 cut(s)	248, 248, 786
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	351, 1008
AcuI	CTGAAG	3 cut(s)	59, 387, 993
AfaI	GTAC	3 cut(s)	272, 960, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	1514
AgsI	TTSAA	8 cut(s)	261, 358, 478, 635, 796, 1279, 1333, 1448
AluBI	AGCT	5 cut(s)	569, 649, 810, 927, 1312
AluI	AGCT	5 cut(s)	569, 649, 810, 927, 1312
Alw21I	GWGCWC	3 cut(s)	465, 651, 1210
Alw44I	GTGCAC	1 cut(s)	461
AlwI	GGATC	3 cut(s)	248, 248, 786
Ama87I	CYCGRG	1 cut(s)	1209
AoxI	GGCC	3 cut(s)	49, 110, 1015
ApaLI	GTGCAC	1 cut(s)	461
ApeKI	GCWGC	3 cut(s)	1409, 1412, 1501
ApoI	RAATTY	2 cut(s)	351, 1008
ArsI	GACNNNNNNTTYG	2 cut(s)	1326, 1358
Asp700I	GAANNNNTTC	2 cut(s)	531, 1328
AspA2I	CCTAGG	1 cut(s)	1520
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	5 cut(s)	49, 98, 231, 595, 1355
AsuHPI	GGTGA	7 cut(s)	76, 784, 1035, 1064, 1319, 1519, 1540
AsuII	TTCGAA	1 cut(s)	717
AvaI	CYCGRG	1 cut(s)	1209
AvaII	GGWCC	4 cut(s)	98, 231, 595, 1355
AvrII	CCTAGG	1 cut(s)	1520
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	651
BarI	GAAGNNNNNNTAC	2 cut(s)	1370, 1402
Bbv12I	GWGCWC	3 cut(s)	465, 651, 1210
BbvI	GCAGC	3 cut(s)	1396, 1424, 1488
BccI	CCATC	9 cut(s)	40, 164, 341, 478, 1043, 1081, 1178, 1284, 1298
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BclI	TGATCA	1 cut(s)	183
BfaI	CTAG	1 cut(s)	1521
BfmI	CTRYAG	2 cut(s)	930, 1410
BfoI	RGCGCY	1 cut(s)	1024
BfrI	CTTAAG	1 cut(s)	1514
BisI	GCNGC	3 cut(s)	1410, 1413, 1502
BlnI	CCTAGG	1 cut(s)	1520
BlsI	GCNGC	3 cut(s)	1411, 1414, 1503
Bme18I	GGWCC	4 cut(s)	98, 231, 595, 1355
BmeT110I	CYCGRG	1 cut(s)	1209
BmgT120I	GGNCC	5 cut(s)	49, 98, 231, 595, 1355
BmiI	GGNNCC	4 cut(s)	232, 233, 672, 1356
BmsI	GCATC	1 cut(s)	976
Bpu10I	CCTNAGC	1 cut(s)	1424
Bpu14I	TTCGAA	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	713, 1064
BsaJI	CCNNGG	6 cut(s)	174, 235, 642, 1233, 1358, 1520
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	17, 113, 1136
BseDI	CCNNGG	6 cut(s)	174, 235, 642, 1233, 1358, 1520
BseGI	GGATG	3 cut(s)	34, 352, 967
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	1438
BseNI	ACTGG	3 cut(s)	17, 113, 1136
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	1396, 1424, 1488
BshFI	GGCC	3 cut(s)	51, 112, 1017
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	3 cut(s)	465, 651, 1210
BsiHKCI	CYCGRG	1 cut(s)	1209
BslFI	GGGAC	3 cut(s)	217, 932, 1272
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmFI	GGGAC	3 cut(s)	217, 932, 1272
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	51, 112, 1017
BsoBI	CYCGRG	1 cut(s)	1209
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	465, 651, 1210
Bsp143I	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
Bsp19I	CCATGG	2 cut(s)	174, 1233
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	51, 112, 1017
BspCNI	CTCAG	1 cut(s)	1437
BspHI	TCATGA	2 cut(s)	331, 523
BspLI	GGNNCC	4 cut(s)	232, 233, 672, 1356
BspMAI	CTGCAG	1 cut(s)	1414
BspPI	GGATC	3 cut(s)	248, 248, 786
BspT104I	TTCGAA	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	670
BspTI	CTTAAG	1 cut(s)	1514
BsrI	ACTGG	3 cut(s)	17, 113, 1136
BssECI	CCNNGG	6 cut(s)	174, 235, 642, 1233, 1358, 1520
BssMI	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
BssT1I	CCWWGG	4 cut(s)	174, 1233, 1358, 1520
Bst4CI	ACNGT	4 cut(s)	772, 851, 1060, 1069
Bst6I	CTCTTC	1 cut(s)	791
BstAFI	CTTAAG	1 cut(s)	1514
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	3 cut(s)	71, 1019, 1271
BstDEI	CTNAG	2 cut(s)	881, 1424
BstDSI	CCRYGG	4 cut(s)	174, 235, 642, 1233
BstF5I	GGATG	3 cut(s)	34, 352, 967
BstH2I	RGCGCY	1 cut(s)	1024
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	7 cut(s)	186, 243, 256, 520, 781, 820, 829
BstMBI	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 575, 891, 1279, 1498
BstNSI	RCATGY	3 cut(s)	277, 1393, 1492
BstSFI	CTRYAG	2 cut(s)	930, 1410
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	1396, 1424, 1488
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	51, 112, 1017
BtgI	CCRYGG	4 cut(s)	174, 235, 642, 1233
BtsCI	GGATG	3 cut(s)	34, 352, 967
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	4 cut(s)	856, 1074, 1110, 1143
Cac8I	GCNNGC	3 cut(s)	71, 1019, 1271
CciI	TCATGA	2 cut(s)	331, 523
CfoI	GCGC	1 cut(s)	1023
Cfr13I	GGNCC	5 cut(s)	49, 98, 231, 595, 1355
Csp6I	GTAC	3 cut(s)	271, 959, 1029
CviQI	GTAC	3 cut(s)	271, 959, 1029
DdeI	CTNAG	2 cut(s)	881, 1424
DpnI	GATC	7 cut(s)	185, 242, 255, 519, 780, 819, 828
DpnII	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	4 cut(s)	174, 1233, 1358, 1520
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	4 cut(s)	98, 231, 595, 1355
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	3 cut(s)	59, 387, 993
Eco88I	CYCGRG	1 cut(s)	1209
EcoICRI	GAGCTC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	231
EcoT14I	CCWWGG	4 cut(s)	174, 1233, 1358, 1520
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	4 cut(s)	174, 1233, 1358, 1520
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	3 cut(s)	217, 932, 1272
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	1410, 1413, 1502
FokI	GGATG	3 cut(s)	41, 359, 954
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	3 cut(s)	1410, 1413, 1502
FspBI	CTAG	1 cut(s)	1521
GlaI	GCGC	1 cut(s)	1022
GluI	GCNGC	3 cut(s)	1410, 1413, 1502
HaeII	RGCGCY	1 cut(s)	1024
HaeIII	GGCC	3 cut(s)	51, 112, 1017
HhaI	GCGC	1 cut(s)	1023
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HinfI	GANTC	7 cut(s)	4, 581, 663, 1040, 1115, 1247, 1510
HphI	GGTGA	7 cut(s)	76, 784, 1035, 1064, 1319, 1519, 1540
Hpy166II	GTNNAC	3 cut(s)	84, 463, 543
Hpy188I	TCNGA	6 cut(s)	9, 78, 183, 662, 871, 1114
Hpy188III	TCNNGA	5 cut(s)	332, 524, 971, 1081, 1181
Hpy8I	GTNNAC	3 cut(s)	84, 463, 543
HpyAV	CCTTC	6 cut(s)	267, 373, 769, 777, 909, 1442
HpyCH4III	ACNGT	4 cut(s)	772, 851, 1060, 1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 575, 891, 1279, 1498
HpyF3I	CTNAG	2 cut(s)	881, 1424
HspAI	GCGC	1 cut(s)	1021
KflI	GGGWCCC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
LmnI	GCTCC	2 cut(s)	382, 646
Lsp1109I	GCAGC	3 cut(s)	1396, 1424, 1488
LweI	GCATC	1 cut(s)	976
MaeI	CTAG	1 cut(s)	1521
MaeIII	GTNAC	1 cut(s)	1528
MalI	GATC	7 cut(s)	185, 242, 255, 519, 780, 819, 828
MboI	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
MboII	GAAGA	8 cut(s)	512, 527, 647, 808, 1085, 1096, 1178, 1387
MfeI	CAATTG	1 cut(s)	1143
MhlI	GDGCHC	3 cut(s)	465, 651, 1210
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	6 cut(s)	351, 708, 791, 1008, 1143, 1328
MluNI	TGGCCA	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	1256, 1519
Mox20I	TGGCCA	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	2 cut(s)	531, 1328
MscI	TGGCCA	1 cut(s)	112
MseI	TTAA	6 cut(s)	812, 1121, 1296, 1347, 1437, 1515
MslI	CAYNNNNRTG	1 cut(s)	1394
Msp20I	TGGCCA	1 cut(s)	112
MspCI	CTTAAG	1 cut(s)	1514
MunI	CAATTG	1 cut(s)	1143
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	5 cut(s)	176, 575, 891, 1279, 1498
NcoI	CCATGG	2 cut(s)	174, 1233
NdeII	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
NlaIV	GGNNCC	4 cut(s)	232, 233, 672, 1356
NmuCI	GTSAC	1 cut(s)	1528
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	3 cut(s)	277, 1393, 1492
NspV	TTCGAA	1 cut(s)	717
PaeR7I	CTCGAG	1 cut(s)	1209
PagI	TCATGA	2 cut(s)	331, 523
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	531, 1328
PfeI	GAWTC	5 cut(s)	4, 581, 663, 1040, 1115
PkrI	GCNGC	3 cut(s)	1411, 1414, 1503
PleI	GAGTC	2 cut(s)	1255, 1518
PpsI	GAGTC	2 cut(s)	1255, 1518
PpuMI	RGGWCCY	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	232, 233, 672, 1356
PspPI	GGNCC	5 cut(s)	49, 98, 231, 595, 1355
PspPPI	RGGWCCY	1 cut(s)	231
PspXI	VCTCGAGB	1 cut(s)	1209
PstI	CTGCAG	1 cut(s)	1414
RsaI	GTAC	3 cut(s)	272, 960, 1030
RsaNI	GTAC	3 cut(s)	271, 959, 1029
RseI	CAYNNNNRTG	1 cut(s)	1394
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	6 cut(s)	812, 1121, 1296, 1347, 1437, 1515
SatI	GCNGC	3 cut(s)	1410, 1413, 1502
Sau3AI	GATC	7 cut(s)	183, 240, 253, 517, 778, 817, 826
Sau96I	GGNCC	5 cut(s)	49, 98, 231, 595, 1355
SchI	GAGTC	2 cut(s)	1256, 1519
SduI	GDGCHC	3 cut(s)	465, 651, 1210
SfaNI	GCATC	1 cut(s)	976
SfcI	CTRYAG	2 cut(s)	930, 1410
Sfr274I	CTCGAG	1 cut(s)	1209
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	4 cut(s)	98, 231, 595, 1355
SlaI	CTCGAG	1 cut(s)	1209
SmiMI	CAYNNNNRTG	1 cut(s)	1394
SmlI	CTYRAG	4 cut(s)	728, 1079, 1209, 1514
SmoI	CTYRAG	4 cut(s)	728, 1079, 1209, 1514
Sse9I	AATT	6 cut(s)	351, 708, 791, 1008, 1143, 1328
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	1521
SstI	GAGCTC	1 cut(s)	651
StyI	CCWWGG	4 cut(s)	174, 1233, 1358, 1520
TaaI	ACNGT	4 cut(s)	772, 851, 1060, 1069
TaqI	TCGA	5 cut(s)	717, 781, 1210, 1240, 1250
TasI	AATT	6 cut(s)	351, 708, 791, 1008, 1143, 1328
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	5 cut(s)	4, 581, 663, 1040, 1115
Tru1I	TTAA	6 cut(s)	812, 1121, 1296, 1347, 1437, 1515
Tru9I	TTAA	6 cut(s)	812, 1121, 1296, 1347, 1437, 1515
TscAI	CASTG	4 cut(s)	856, 1074, 1110, 1143
TseFI	GTSAC	1 cut(s)	1528
TseI	GCWGC	3 cut(s)	1409, 1412, 1501
Tsp45I	GTSAC	1 cut(s)	1528
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	4 cut(s)	856, 1074, 1110, 1143
Vha464I	CTTAAG	1 cut(s)	1514
VneI	GTGCAC	1 cut(s)	461
VpaK11BI	GGWCC	4 cut(s)	98, 231, 595, 1355
XapI	RAATTY	2 cut(s)	351, 1008
XceI	RCATGY	3 cut(s)	277, 1393, 1492
XcmI	CCANNNNNNNNNTGG	3 cut(s)	454, 681, 1240
XhoI	CTCGAG	1 cut(s)	1209
XmaJI	CCTAGG	1 cut(s)	1520
XmnI	GAANNNNTTC	2 cut(s)	531, 1328
XspI	CTAG	1 cut(s)	1521
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.