AT3G26125

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
9551812 .. 9553602
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26125.1

Sequence Viewer

Length: 1626 bp
ATGTCTAATGAAAATTCTGTAATGTCATTGATAGATCGCATCTCTGGTCATCTCTGTCTTCAAGATGTATCAATTGCGTTGTTAGGTTTATTCCTTTTCGGTTGCTTGCAAGCGAAGTTAACCAACAAAGGCGAACCAGTACAATGGCCTGTGTTTGGGATAACTCCCGAGTTCTTCCTTCATGTTCACGATATGTTTGGATGGGTCACCCGATGTTTGACGAAAAGCCGAGGAACGTTTCCTTACCAAGGAATCTGGTTTAGTGGATCTTACGGAGCCATGACTAGTGTTCCTGCAAACATCGAATACATGCTCAAAACCAATTTCAAGAACTTTCCTAAAGGAGAGTTTTACAAAGAGAGATTCCGTGACTTACTCGAAGATGGTATTTTCAATGCGGATGATGAATCTTGGAAAGAACAGAGACGGATCATCATAACAGAAATGCATTCCACTCGCTTCGTGGATCATTCTTTCCAGACGACGAGAGATTTGATAGAGAGGAAGCTTTTAAAAGTGATGGAGAGTTTCTCCAAGTCACAAGAAGCTTTTGATCTTCAAGAGATTCTTTTACGGTTAACATTTGATAATATCTGCATCGCGGGTCTTGGAGATGATCCGGGGACTTTGGATGATGATCTTCCTCACGTTCCATTCGCCAAAGCGTTTGAAGAAGCAACAGAGTCTACTCTGTTTCGGTTCATGATTCCGCCTTTTGTGTGGAAACCAATGAAGTTTTTCGATATAGGGTATGAGAAAGGGCTTAGGGAAGCGGTTGAGACGGTTCACAACTTTATCGACAAGATGGTTGTTGAACGAATCGCGATGCTTAAGGACCAAGGAACATTAGCGAATAGCAAATCCGATGTCCTCTCGAGGCTAATACAGATCGAAAGTCACAAAAGAGGCGATGAAAATGATCGATTCACCGCCAAGTTTTTCAGACAGTTCTGCACAAGCTTCATCTTAGCCGGACGAGACACGAGTTCCGTCGCGCTTACTTGGTTCTTCTGGTTGATAACAAAACACCCGGAAGTCGAAACCAAGATCCTTCACGAAATCAGAGAAATCTTGAACCAAAGAGAGAAGAACAAGTACAAGCTTGATGAAACCGGAGAAAAGGAGAGTTCTCGTCACTTCACAGTCAAAGAACTTAACGATATGGTTTATCTACAAGCAGCATTGTCAGAATCTCTTAGACTCTATCCACCAATTCCAATGGAAATGAAACAAGCGACCGAGGAAGATGTGTTTCCGGATGGAACTTTCTTGAGAAAAGGCTCAAGGGTTTACTTCTCAGTCTATGCAATGGGAAGGATGGAATCGATTTGGGGAAAAGACTGTGAAATGTTCAAACCAGAAAGATGGATACAAGGAGGGCAATACGTGAGTGATGATCAGTTTAAATACGTCGTGTTCAATGCAGGTCCAAGACTTTGTTTAGGGAAAACATTTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCGATCTTGCTGAATTACTCAATCAAGGTTGATCAAGATCATGTTGTTGTTCCGCGAGTAACAACGACTTTGTATATGAAACATGGTCTTAAGGTCAGGATTACACCGAGATCTCTAGAAGAGAAGAAGCAAGATTCATAA

Protein Analysis

541

Amino Acids

62.8

Weight (kDa)

6.39

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 46 - 517 6.3e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13140 AT1G13140 AT1G13150 AT1G24540 AT3G26125
fragaria_vesca FvH4_4g25350
malus_domestica MD13G1104800.v1.1
prunus_persica Prupe.1G241700_v2.0.a1
pyrus_communis pycom13g09100
rosa_chinensis RchiOBHm_Chr4g0432631
rosa_laevigata RLG00000006828
rosa_multiflora Rmu_sc0004612.1_g000006
rosa_roxburghii Rroxscaffold_5G00374100
rosa_rugosa Rorug04G0260900.1
rosa_samantha Rh4BG323500 Rh4CG338600 Rh4DG319100
rosa_wichuraiana Rw4G027440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1415
AccI GTMKAC 1 cut(s) 686
AccII CGCG 4 cut(s) 602, 824, 995, 1540
AccIII TCCGGA 1 cut(s) 1255
AciI CCGC 6 cut(s) 398, 602, 710, 773, 930, 1538
AclI AACGTT 1 cut(s) 236
AclWI GGATC 5 cut(s) 274, 437, 474, 611, 1042
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 2 cut(s) 141, 1097
AfiI CCNNNNNNNGG 2 cut(s) 155, 248
AflII CTTAAG 2 cut(s) 830, 1574
AgsI TTSAA 9 cut(s) 62, 328, 394, 560, 671, 815, 1075, 1354, 1420
AhlI ACTAGT 1 cut(s) 284
AluBI AGCT 4 cut(s) 508, 548, 960, 1102
AluI AGCT 4 cut(s) 508, 548, 960, 1102
Alw26I GTCTC 3 cut(s) 418, 773, 972
AlwI GGATC 5 cut(s) 274, 437, 474, 611, 1042
Ama87I CYCGRG 2 cut(s) 167, 874
Aor13HI TCCGGA 1 cut(s) 1255
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 1178, 1481
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 4 cut(s) 475, 507, 852, 884
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 835, 1427
AsuC2I CCSGG 2 cut(s) 621, 1031
AsuHPI GGTGA 2 cut(s) 199, 919
AvaI CYCGRG 2 cut(s) 167, 874
AvaII GGWCC 2 cut(s) 835, 1427
BarI GAAGNNNNNNTAC 2 cut(s) 1079, 1111
BauI CACGAG 1 cut(s) 982
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 1190, 1468
BccI CCATC 7 cut(s) 195, 377, 514, 799, 1253, 1312, 1359
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciVI GTATCC 1 cut(s) 1362
BclI TGATCA 2 cut(s) 1396, 1516
BcnI CCSGG 2 cut(s) 621, 1031
BcoDI GTCTC 3 cut(s) 418, 773, 972
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 1601
BfrI CTTAAG 2 cut(s) 830, 1574
BfuAI ACCTGC 1 cut(s) 1415
BfuI GTATCC 1 cut(s) 1362
BglII AGATCT 1 cut(s) 1595
BisI GCNGC 2 cut(s) 1179, 1482
BlsI GCNGC 2 cut(s) 1180, 1483
Bme1390I CCNGG 2 cut(s) 621, 1031
Bme18I GGWCC 2 cut(s) 835, 1427
BmeT110I CYCGRG 2 cut(s) 167, 874
BmgT120I GGNCC 2 cut(s) 835, 1427
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 621, 1031
BmsI GCATC 3 cut(s) 48, 606, 816
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu10I CCTNAGC 1 cut(s) 764
BpuEI CTTGAG 2 cut(s) 1267, 1291
BpuMI CCSGG 2 cut(s) 621, 1031
Bsa29I ATCGAT 2 cut(s) 922, 1325
BsaAI YACGTR 1 cut(s) 1387
BsaBI GATNNNNATC 2 cut(s) 636, 1521
BsaJI CCNNGG 5 cut(s) 229, 247, 620, 838, 1239
BsaWI WCCGGW 2 cut(s) 1112, 1255
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 248
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 1314
Bse8I GATNNNNATC 2 cut(s) 636, 1521
BseAI TCCGGA 1 cut(s) 1255
BseCI ATCGAT 2 cut(s) 922, 1325
BseDI CCNNGG 5 cut(s) 229, 247, 620, 838, 1239
BseGI GGATG 5 cut(s) 206, 406, 637, 1264, 1323
BseJI GATNNNNATC 2 cut(s) 636, 1521
BseLI CCNNNNNNNGG 2 cut(s) 155, 248
BseMI GCAATG 1 cut(s) 1314
BseMII CTCAG 1 cut(s) 1311
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 1190, 1468
BsgI GTGCAG 1 cut(s) 937
Bsh1236I CGCG 4 cut(s) 602, 824, 995, 1540
Bsh1285I CGRYCG 1 cut(s) 1239
BshFI GGCC 1 cut(s) 148
BshVI ATCGAT 2 cut(s) 922, 1325
BsiEI CGRYCG 1 cut(s) 1239
BsiHKCI CYCGRG 2 cut(s) 167, 874
BsiSI CCGG 5 cut(s) 620, 972, 1031, 1113, 1256
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 155, 248
BsmAI GTCTC 3 cut(s) 418, 773, 972
BsmBI CGTCTC 2 cut(s) 418, 773
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 2 cut(s) 167, 874
Bsp13I TCCGGA 1 cut(s) 1255
Bsp68I TCGCGA 1 cut(s) 824
BspACI CCGC 6 cut(s) 398, 602, 710, 773, 930, 1538
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 1310
BspDI ATCGAT 2 cut(s) 922, 1325
BspEI TCCGGA 1 cut(s) 1255
BspFNI CGCG 4 cut(s) 602, 824, 995, 1540
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 1415
BspPI GGATC 5 cut(s) 274, 437, 474, 611, 1042
BspTI CTTAAG 2 cut(s) 830, 1574
BsrDI GCAATG 1 cut(s) 1314
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 229, 247, 620, 838, 1239
BssSI CACGAG 1 cut(s) 982
BssT1I CCWWGG 2 cut(s) 247, 838
Bst2BI CACGAG 1 cut(s) 982
Bst4CI ACNGT 5 cut(s) 576, 784, 948, 1144, 1343
Bst6I CTCTTC 1 cut(s) 1599
BstAFI CTTAAG 2 cut(s) 830, 1574
BstBAI YACGTR 1 cut(s) 1387
BstC8I GCNNGC 2 cut(s) 107, 111
BstDEI CTNAG 4 cut(s) 764, 967, 1196, 1297
BstEII GGTNACC 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 5 cut(s) 206, 406, 637, 1264, 1323
BstFNI CGCG 4 cut(s) 602, 824, 995, 1540
BstHHI GCGC 1 cut(s) 997
BstMAI GTCTC 3 cut(s) 418, 773, 972
BstMCI CGRYCG 1 cut(s) 1239
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 619, 1029
BstUI CGCG 4 cut(s) 602, 824, 995, 1540
BstV1I GCAGC 2 cut(s) 1190, 1468
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 3 cut(s) 266, 1047, 1595
BstXI CCANNNNNNTGG 2 cut(s) 144, 1365
BstYI RGATCY 3 cut(s) 266, 1047, 1595
Bsu15I ATCGAT 2 cut(s) 922, 1325
BsuI GTATCC 1 cut(s) 1362
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 2 cut(s) 922, 1325
BtgZI GCGATG 3 cut(s) 583, 839, 924
BtsCI GGATG 5 cut(s) 206, 406, 637, 1264, 1323
BtuMI TCGCGA 1 cut(s) 824
BveI ACCTGC 1 cut(s) 1415
Cac8I GCNNGC 2 cut(s) 107, 111
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 835, 1427
ClaI ATCGAT 2 cut(s) 922, 1325
Csp6I GTAC 2 cut(s) 140, 1096
CviAII CATG 6 cut(s) 182, 280, 310, 703, 1526, 1568
CviQI GTAC 2 cut(s) 140, 1096
DdeI CTNAG 4 cut(s) 764, 967, 1196, 1297
DraI TTTAAA 2 cut(s) 513, 1405
Eam1104I CTCTTC 1 cut(s) 1599
EarI CTCTTC 1 cut(s) 1599
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 247, 838
Eco47I GGWCC 2 cut(s) 835, 1427
Eco88I CYCGRG 2 cut(s) 167, 874
Eco91I GGTNACC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 247, 838
EcoT22I ATGCAT 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 247, 838
Esp3I CGTCTC 2 cut(s) 418, 773
FaeI CATG 6 cut(s) 185, 283, 313, 706, 1529, 1571
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 637
FatI CATG 6 cut(s) 181, 279, 309, 702, 1525, 1567
FauI CCCGC 1 cut(s) 595
FbaI TGATCA 2 cut(s) 1396, 1516
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 2 cut(s) 1179, 1482
FokI GGATG 5 cut(s) 213, 413, 644, 1271, 1330
Fsp4HI GCNGC 2 cut(s) 1179, 1482
FspBI CTAG 2 cut(s) 285, 1601
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 1179, 1482
HaeIII GGCC 1 cut(s) 148
HapII CCGG 5 cut(s) 620, 972, 1031, 1113, 1256
HhaI GCGC 1 cut(s) 997
Hin1II CATG 6 cut(s) 185, 283, 313, 706, 1529, 1571
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 2 cut(s) 120, 579
HindII GTYRAC 2 cut(s) 120, 579
HindIII AAGCTT 4 cut(s) 506, 546, 958, 1100
HpaI GTTAAC 2 cut(s) 120, 579
HpaII CCGG 5 cut(s) 620, 972, 1031, 1113, 1256
HphI GGTGA 2 cut(s) 199, 919
Hpy166II GTNNAC 6 cut(s) 120, 187, 579, 687, 787, 1291
Hpy188I TCNGA 4 cut(s) 865, 944, 1064, 1189
Hpy8I GTNNAC 6 cut(s) 120, 187, 579, 687, 787, 1291
Hpy99I CGWCG 3 cut(s) 487, 995, 1415
HpyAV CCTTC 3 cut(s) 188, 1061, 1308
HpyCH4III ACNGT 5 cut(s) 576, 784, 948, 1144, 1343
HpyCH4IV ACGT 4 cut(s) 236, 648, 1386, 1410
HpyCH4V TGCA 8 cut(s) 109, 296, 448, 597, 954, 1307, 1424, 1465
HpyF3I CTNAG 4 cut(s) 764, 967, 1196, 1297
HpySE526I ACGT 4 cut(s) 236, 648, 1386, 1410
Hsp92II CATG 6 cut(s) 185, 283, 313, 706, 1529, 1571
HspAI GCGC 1 cut(s) 995
Kpn2I TCCGGA 1 cut(s) 1255
Ksp22I TGATCA 2 cut(s) 1396, 1516
KspAI GTTAAC 2 cut(s) 120, 579
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 1190, 1468
LweI GCATC 3 cut(s) 48, 606, 816
MaeI CTAG 2 cut(s) 285, 1601
MaeII ACGT 4 cut(s) 236, 648, 1386, 1410
MaeIII GTNAC 6 cut(s) 205, 368, 537, 896, 1133, 1543
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 3 cut(s) 266, 1047, 1595
MluCI AATT 5 cut(s) 13, 72, 322, 1212, 1498
MlyI GAGTC 2 cut(s) 692, 1194
MnlI CCTC 8 cut(s) 224, 495, 654, 870, 881, 899, 1234, 1370
Mph1103I ATGCAT 1 cut(s) 450
MroI TCCGGA 1 cut(s) 1255
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 7 cut(s) 119, 512, 578, 831, 1155, 1404, 1575
MspCI CTTAAG 2 cut(s) 830, 1574
MspI CCGG 5 cut(s) 620, 972, 1031, 1113, 1256
MspR9I CCNGG 2 cut(s) 621, 1031
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 4 cut(s) 602, 824, 995, 1540
NciI CCSGG 2 cut(s) 621, 1031
NlaIII CATG 6 cut(s) 185, 283, 313, 706, 1529, 1571
NlaIV GGNNCC 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 5 cut(s) 205, 368, 537, 896, 1133
NruI TCGCGA 1 cut(s) 824
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 874
PagI TCATGA 1 cut(s) 702
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 737
PkrI GCNGC 2 cut(s) 1180, 1483
PleI GAGTC 2 cut(s) 691, 1194
PpsI GAGTC 2 cut(s) 691, 1194
Ppu21I YACGTR 1 cut(s) 1387
Psp1406I AACGTT 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 835, 1427
PsuI RGATCY 3 cut(s) 266, 1047, 1595
RruI TCGCGA 1 cut(s) 824
RsaI GTAC 2 cut(s) 141, 1097
RsaNI GTAC 2 cut(s) 140, 1096
SaqAI TTAA 7 cut(s) 119, 512, 578, 831, 1155, 1404, 1575
SatI GCNGC 2 cut(s) 1179, 1482
Sau96I GGNCC 2 cut(s) 835, 1427
SchI GAGTC 2 cut(s) 692, 1194
ScrFI CCNGG 2 cut(s) 621, 1031
SfaNI GCATC 3 cut(s) 48, 606, 816
Sfr274I CTCGAG 1 cut(s) 874
SinI GGWCC 2 cut(s) 835, 1427
SlaI CTCGAG 1 cut(s) 874
SmlI CTYRAG 5 cut(s) 830, 874, 1270, 1282, 1574
SmoI CTYRAG 5 cut(s) 830, 874, 1270, 1282, 1574
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 5 cut(s) 13, 72, 322, 1212, 1498
SsiI CCGC 6 cut(s) 398, 602, 710, 773, 930, 1538
SspMI CTAG 2 cut(s) 285, 1601
StyD4I CCNGG 2 cut(s) 619, 1029
StyI CCWWGG 2 cut(s) 247, 838
TaaI ACNGT 5 cut(s) 576, 784, 948, 1144, 1343
TaiI ACGT 4 cut(s) 239, 651, 1389, 1413
TaqII GACCGA 1 cut(s) 1253
TasI AATT 5 cut(s) 13, 72, 322, 1212, 1498
TatI WGTACW 2 cut(s) 139, 1095
Tru1I TTAA 7 cut(s) 119, 512, 578, 831, 1155, 1404, 1575
Tru9I TTAA 7 cut(s) 119, 512, 578, 831, 1155, 1404, 1575
TseFI GTSAC 5 cut(s) 205, 368, 537, 896, 1133
TseI GCWGC 2 cut(s) 1178, 1481
Tsp45I GTSAC 5 cut(s) 205, 368, 537, 896, 1133
TspGWI ACGGA 4 cut(s) 288, 356, 442, 979
Vha464I CTTAAG 2 cut(s) 830, 1574
VpaK11BI GGWCC 2 cut(s) 835, 1427
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 1600
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 874
XmiI GTMKAC 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 2 cut(s) 285, 1601
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.