Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004612.1

Orthogroup ID

OG0013182

Physical Location & Seq

Genomic Coordinates Reverse (-)

24686 .. 26128

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004612.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atgttatggccagttttggggattgcaccctccatatttctaaatgcacacaccatctatgattgggctaccatggctctgatcaaagcagggggaacattccactacaaaggagtgtggttcggcgggtgccacgggatcataacacttgatccttcaaacattgagtacatgctcaaaacaaggttcagcaacttcccaaaaggcaagtattacagggagaggtttcatgatttgcttggggatggaattttcaatgcagacaatgagttgtggaaggagcagaggaggttggcaacttcagaaatgcattcgggtcgttttgtggagtattcgtttttctccatgcaagagttggtgcacaagaagttgttgaagttgatggagaaagtggtagtatcagggtgtagcattgatcttcatgaagtgcttcttcggtttacttttgacaacatttgctcgttagctcttggtgctgattcagggtgtttggaccttgatttgcctcaaagtccttttgtgaaagcctttgaagaagccacggagctcactatgttcagattcatattgccaccttttgtgtggaagcctatgaagttgtttggaattgggttcgaaaagaggctcaaggaagcaactaaaatagtgcattattttgctgaaaatacggtcaaggatcgaaggggagaattgaagaggctcggtagcttaaaagatcgttttgatctattgtcaaggcttctggacagtgaaaagcaacatttttcggataagtttctaagcgatttctgcataagtttcattttggctggaagggacacaagctctgtaggattggcatggtttttttggttggtacaaaagcatcctgaagtggaaaacaaaatcctcaaagaaatcaatgaaattttaggccagcgccaatgcaccgaaaaagaatcaccagatggtgatactgtttttacagtggaagaactcaagaagatggtctatttacaagcagtgttgtcagaatctctaaggctttacccaccagtgccaattgacatcaaagaggtcgtagaagatgatgtgtttcctgatggtagtatcgtcaaaaagggtgctcgagttctctactgcatttactccatggctcgaatggagtcgatctggggacaggattgcttgcagttcaagcctgaaagatggattaacaatgatggtgagcttgtcaatgagaatcaattcaaatatgctgtctttaatgggggtccaaggttttgtttggggaagaagtttgcttacatgcagatgaaagtggtggctgcagccactctgctcaggtatgaagttaaggttgttgaaggtcaaaatgttgttccaaagatgacaaccacactatacatgcagaatgggctgctggtgagtcttaagcctaggttggtgattactattgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0012505 GO:0016053 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046394 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04144 ko04217 map00073 map04144 map04217

Pfam Domains

Protein Families

p450

Protein Analysis

480

Amino Acids

55.22

Weight (kDa)

7.95

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13140 AT1G13140 AT1G13150 AT1G24540 AT3G26125
fragaria_vesca	FvH4_4g25350
malus_domestica	MD13G1104800.v1.1
prunus_persica	Prupe.1G241700_v2.0.a1
pyrus_communis	pycom13g09100
rosa_chinensis	RchiOBHm_Chr4g0432631
rosa_laevigata	RLG00000006828
rosa_multiflora	Rmu_sc0004612.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374100
rosa_rugosa	Rorug04G0260900.1
rosa_samantha	Rh4BG323500 Rh4CG338600 Rh4DG319100
rosa_wichuraiana	Rw4G027440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	146, 146, 684
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	249, 906
AcuI	CTGAAG	2 cut(s)	285, 891
AfaI	GTAC	2 cut(s)	170, 858
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflII	CTTAAG	1 cut(s)	1412
AgsI	TTSAA	8 cut(s)	159, 256, 376, 533, 694, 1177, 1231, 1346
AluBI	AGCT	5 cut(s)	467, 547, 708, 825, 1210
AluI	AGCT	5 cut(s)	467, 547, 708, 825, 1210
Alw21I	GWGCWC	3 cut(s)	363, 549, 1108
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	3 cut(s)	146, 146, 684
Ama87I	CYCGRG	1 cut(s)	1107
AoxI	GGCC	2 cut(s)	8, 913
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	1307, 1310, 1399
ApoI	RAATTY	2 cut(s)	249, 906
ArsI	GACNNNNNNTTYG	2 cut(s)	1224, 1256
Asp700I	GAANNNNTTC	2 cut(s)	429, 1226
AspA2I	CCTAGG	1 cut(s)	1418
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	2 cut(s)	493, 1253
AsuHPI	GGTGA	5 cut(s)	933, 962, 1217, 1417, 1438
AsuII	TTCGAA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	1107
AvaII	GGWCC	2 cut(s)	493, 1253
AvrII	CCTAGG	1 cut(s)	1418
BaeGI	GKGCMC	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	549
BarI	GAAGNNNNNNTAC	2 cut(s)	1268, 1300
Bbv12I	GWGCWC	3 cut(s)	363, 549, 1108
BbvI	GCAGC	3 cut(s)	1294, 1322, 1386
BccI	CCATC	8 cut(s)	62, 239, 376, 941, 979, 1076, 1182, 1196
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BclI	TGATCA	1 cut(s)	81
BfaI	CTAG	1 cut(s)	1419
BfmI	CTRYAG	2 cut(s)	828, 1308
BfoI	RGCGCY	1 cut(s)	922
BfrI	CTTAAG	1 cut(s)	1412
BisI	GCNGC	3 cut(s)	1308, 1311, 1400
BlnI	CCTAGG	1 cut(s)	1418
BlsI	GCNGC	3 cut(s)	1309, 1312, 1401
Bme18I	GGWCC	2 cut(s)	493, 1253
BmeT110I	CYCGRG	1 cut(s)	1107
BmgT120I	GGNCC	2 cut(s)	493, 1253
BmiI	GGNNCC	2 cut(s)	131, 1254
BmsI	GCATC	1 cut(s)	874
Bpu10I	CCTNAGC	1 cut(s)	1322
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	611, 962
BsaJI	CCNNGG	6 cut(s)	72, 133, 540, 1131, 1256, 1418
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	11, 1034
BseDI	CCNNGG	6 cut(s)	72, 133, 540, 1131, 1256, 1418
BseGI	GGATG	2 cut(s)	250, 865
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	1336
BseNI	ACTGG	2 cut(s)	11, 1034
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	1294, 1322, 1386
BshFI	GGCC	2 cut(s)	10, 915
BshNI	GGYRCC	1 cut(s)	129
BsiHKAI	GWGCWC	3 cut(s)	363, 549, 1108
BsiHKCI	CYCGRG	1 cut(s)	1107
BslFI	GGGAC	2 cut(s)	830, 1170
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	830, 1170
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	10, 915
BsoBI	CYCGRG	1 cut(s)	1107
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	3 cut(s)	363, 549, 1108
Bsp143I	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
Bsp19I	CCATGG	2 cut(s)	72, 1131
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	10, 915
BspCNI	CTCAG	1 cut(s)	1335
BspHI	TCATGA	2 cut(s)	229, 421
BspLI	GGNNCC	2 cut(s)	131, 1254
BspMAI	CTGCAG	1 cut(s)	1312
BspPI	GGATC	3 cut(s)	146, 146, 684
BspT104I	TTCGAA	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	1412
BsrI	ACTGG	2 cut(s)	11, 1034
BssECI	CCNNGG	6 cut(s)	72, 133, 540, 1131, 1256, 1418
BssMI	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
BssT1I	CCWWGG	4 cut(s)	72, 1131, 1256, 1418
Bst4CI	ACNGT	4 cut(s)	670, 749, 958, 967
Bst6I	CTCTTC	1 cut(s)	689
BstAFI	CTTAAG	1 cut(s)	1412
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	917, 1169
BstDEI	CTNAG	3 cut(s)	779, 1019, 1322
BstDSI	CCRYGG	4 cut(s)	72, 133, 540, 1131
BstF5I	GGATG	2 cut(s)	250, 865
BstH2I	RGCGCY	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	8 cut(s)	84, 141, 154, 418, 679, 718, 727, 1152
BstMBI	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 473, 789, 1177, 1396
BstNSI	RCATGY	3 cut(s)	175, 1291, 1390
BstSFI	CTRYAG	2 cut(s)	828, 1308
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	1294, 1322, 1386
BsuRI	GGCC	2 cut(s)	10, 915
BtgI	CCRYGG	4 cut(s)	72, 133, 540, 1131
BtsCI	GGATG	2 cut(s)	250, 865
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	4 cut(s)	754, 972, 1008, 1041
Cac8I	GCNNGC	2 cut(s)	917, 1169
CciI	TCATGA	2 cut(s)	229, 421
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	2 cut(s)	493, 1253
Csp6I	GTAC	2 cut(s)	169, 857
CviAII	CATG	9 cut(s)	73, 172, 230, 346, 422, 840, 1132, 1288, 1387
CviQI	GTAC	2 cut(s)	169, 857
DdeI	CTNAG	3 cut(s)	779, 1019, 1322
DpnI	GATC	8 cut(s)	83, 140, 153, 417, 678, 717, 726, 1151
DpnII	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	4 cut(s)	72, 1131, 1256, 1418
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	493, 1253
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	285, 891
Eco88I	CYCGRG	1 cut(s)	1107
EcoICRI	GAGCTC	1 cut(s)	547
EcoT14I	CCWWGG	4 cut(s)	72, 1131, 1256, 1418
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	4 cut(s)	72, 1131, 1256, 1418
FaeI	CATG	9 cut(s)	76, 175, 233, 349, 425, 843, 1135, 1291, 1390
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	2 cut(s)	830, 1170
FatI	CATG	9 cut(s)	72, 171, 229, 345, 421, 839, 1131, 1287, 1386
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	1308, 1311, 1400
FokI	GGATG	2 cut(s)	257, 852
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	1308, 1311, 1400
FspBI	CTAG	1 cut(s)	1419
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	3 cut(s)	1308, 1311, 1400
HaeII	RGCGCY	1 cut(s)	922
HaeIII	GGCC	2 cut(s)	10, 915
HhaI	GCGC	1 cut(s)	921
Hin1II	CATG	9 cut(s)	76, 175, 233, 349, 425, 843, 1135, 1291, 1390
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	7 cut(s)	479, 561, 938, 1013, 1145, 1222, 1408
HphI	GGTGA	5 cut(s)	933, 962, 1217, 1417, 1438
Hpy166II	GTNNAC	2 cut(s)	361, 441
Hpy188I	TCNGA	5 cut(s)	81, 304, 560, 769, 1012
Hpy188III	TCNNGA	6 cut(s)	230, 422, 743, 869, 979, 1079
Hpy8I	GTNNAC	2 cut(s)	361, 441
HpyAV	CCTTC	5 cut(s)	165, 271, 675, 807, 1340
HpyCH4III	ACNGT	4 cut(s)	670, 749, 958, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 473, 789, 1177, 1396
HpyF3I	CTNAG	3 cut(s)	779, 1019, 1322
Hsp92II	CATG	9 cut(s)	76, 175, 233, 349, 425, 843, 1135, 1291, 1390
HspAI	GCGC	1 cut(s)	919
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
LmnI	GCTCC	2 cut(s)	280, 544
Lsp1109I	GCAGC	3 cut(s)	1294, 1322, 1386
LweI	GCATC	1 cut(s)	874
MaeI	CTAG	1 cut(s)	1419
MalI	GATC	8 cut(s)	83, 140, 153, 417, 678, 717, 726, 1151
MboI	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
MboII	GAAGA	8 cut(s)	410, 425, 545, 706, 983, 994, 1076, 1285
MfeI	CAATTG	1 cut(s)	1041
MhlI	GDGCHC	3 cut(s)	363, 549, 1108
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	6 cut(s)	249, 606, 689, 906, 1041, 1226
MluNI	TGGCCA	1 cut(s)	10
MlyI	GAGTC	2 cut(s)	1154, 1417
MnlI	CCTC	9 cut(s)	40, 216, 279, 282, 516, 615, 690, 899, 1048
Mox20I	TGGCCA	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	2 cut(s)	429, 1226
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	5 cut(s)	710, 1194, 1245, 1335, 1413
MslI	CAYNNNNRTG	1 cut(s)	1292
Msp20I	TGGCCA	1 cut(s)	10
MspCI	CTTAAG	1 cut(s)	1412
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	5 cut(s)	74, 473, 789, 1177, 1396
NcoI	CCATGG	2 cut(s)	72, 1131
NdeII	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
NlaIII	CATG	9 cut(s)	76, 175, 233, 349, 425, 843, 1135, 1291, 1390
NlaIV	GGNNCC	2 cut(s)	131, 1254
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	3 cut(s)	175, 1291, 1390
NspV	TTCGAA	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	1107
PagI	TCATGA	2 cut(s)	229, 421
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	429, 1226
PfeI	GAWTC	5 cut(s)	479, 561, 938, 1013, 1222
PkrI	GCNGC	3 cut(s)	1309, 1312, 1401
PleI	GAGTC	2 cut(s)	1153, 1416
PpsI	GAGTC	2 cut(s)	1153, 1416
Psp124BI	GAGCTC	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	131, 1254
PspPI	GGNCC	2 cut(s)	493, 1253
PspXI	VCTCGAGB	1 cut(s)	1107
PstI	CTGCAG	1 cut(s)	1312
RsaI	GTAC	2 cut(s)	170, 858
RsaNI	GTAC	2 cut(s)	169, 857
RseI	CAYNNNNRTG	1 cut(s)	1292
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	710, 1194, 1245, 1335, 1413
SatI	GCNGC	3 cut(s)	1308, 1311, 1400
Sau3AI	GATC	8 cut(s)	81, 138, 151, 415, 676, 715, 724, 1149
Sau96I	GGNCC	2 cut(s)	493, 1253
SchI	GAGTC	2 cut(s)	1154, 1417
SduI	GDGCHC	3 cut(s)	363, 549, 1108
SfaNI	GCATC	1 cut(s)	874
SfcI	CTRYAG	2 cut(s)	828, 1308
Sfr274I	CTCGAG	1 cut(s)	1107
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	2 cut(s)	493, 1253
SlaI	CTCGAG	1 cut(s)	1107
SmiMI	CAYNNNNRTG	1 cut(s)	1292
SmlI	CTYRAG	4 cut(s)	626, 977, 1107, 1412
SmoI	CTYRAG	4 cut(s)	626, 977, 1107, 1412
Sse9I	AATT	6 cut(s)	249, 606, 689, 906, 1041, 1226
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	1419
SstI	GAGCTC	1 cut(s)	549
StyI	CCWWGG	4 cut(s)	72, 1131, 1256, 1418
TaaI	ACNGT	4 cut(s)	670, 749, 958, 967
TaqI	TCGA	5 cut(s)	615, 679, 1108, 1138, 1148
TasI	AATT	6 cut(s)	249, 606, 689, 906, 1041, 1226
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	479, 561, 938, 1013, 1222
Tru1I	TTAA	5 cut(s)	710, 1194, 1245, 1335, 1413
Tru9I	TTAA	5 cut(s)	710, 1194, 1245, 1335, 1413
TscAI	CASTG	4 cut(s)	754, 972, 1008, 1041
TseI	GCWGC	3 cut(s)	1307, 1310, 1399
TspDTI	ATGAA	9 cut(s)	218, 410, 438, 553, 608, 790, 918, 1310, 1344
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	4 cut(s)	754, 972, 1008, 1041
Vha464I	CTTAAG	1 cut(s)	1412
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	493, 1253
XapI	RAATTY	2 cut(s)	249, 906
XceI	RCATGY	3 cut(s)	175, 1291, 1390
XcmI	CCANNNNNNNNNTGG	3 cut(s)	352, 579, 1138
XhoI	CTCGAG	1 cut(s)	1107
XmaJI	CCTAGG	1 cut(s)	1418
XmnI	GAANNNNTTC	2 cut(s)	429, 1226
XspI	CTAG	1 cut(s)	1419
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.