Rroxscaffold_5G00374100

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55163528 .. 55165090
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374100.1

Sequence Viewer

Length: 1563 bp
ATGGGTTTTTCCTCTGCAATGATTCTGAACTGGCTACATTTCTGGGATGTAGCACTTGCCTTGATGGGCCTGTTCATATTTAGTTGCTTGCTTCAGAGGTTCACCAACAAAAATGGTCCGATGCTATGGCCAGTTTTGGGGATTACACCCTCCATGTTTCTAAATGCACACACCATCTATGATTGGGTTACCATGGCTCTGATCAAAGCAGGGGGAACATTCCACTACAAAGGAGTGTGGTTCGGAGGGTCCCACGGGATCATAACAATTGATCCTTCAAACGTTGAGTACATGCTCAAAACAAGGTTCAGCAATTACCCAAAAGGCAAGTATTACAGGGAGAGGTTTCATGATTTGCTTGGGGATGGAATTTTCAATGCAGACAATGAGCTGTGGAAGGAGCAGAGGAGGTTGGCAACTTCAGAAATGCATTCGGGTCGTTTTGTGGAGTATTCGTTTTTCTCCATGAAAGAGTTGGTGCACAAGAAGTTGTTGAAGTTGATGGAGAAAGTGGTAGTATCAGGGGGTAGCATTGATCTTCATGATGTGCTTCTTCGGTTTACTTTTGACAACATTTGCTCGGTAGCTCTTGGTGCTGATTCAGGGTGTTTGGACCTTGATTTGCCTCAAAGTCCTTTTGTGAAAGCCTTTGAAGAAGCCACGGAGCTCACTATGTTCAGATTCATGGTGCCACCTTTTGTGTGGAAGCCTATGAAGTTGTTTGGAATTGGGTTCGAAAAGAGGCTCAAGGAAGCAACTAAAATAGTGCATTGTTTTGCTGAAAATACGGTGAAGGATCGAAGGGGAGAATTGAAGAGGCTCGGTAGCTTAAAAGATCGTTTTGATCTATTGTCAAGGCTTATGGACAGTGAAAAGCAACATTTTCCGGATAAGTTTCTAAGCGATTTCTGCATAAGTTTCATTTTGGCTGGAAGGGACACAAGCTCTGTAGGATTGGCATGGTTTTTTTGGTTGGTACAAAAACATCCTGAAGTGGAAAACAAAATCCTCAAAGAAATCAATGAAATTTTAGGCCAGCGCCAATGTACCGAAAAAGAATCACCAGATGGTGATACTGTTTTTACAGTGGAAGAACTCAAGAAGATGGTCTATTTACAAGCAGTGTTGTCAGAATCTTTAAGGCTTTACCCACCAGTGCCAATTGACATCAAAGAGGTCGTAGAAGATGATGTGTTTCCTGATGGTAACATCGTCAAAAAGGGTGCTCGAGTTCTCTACTGCATGTACTCCATGGCTCGAATGGAGTCGATTTGGGGACAGGATTGCTTGCAGTTCAAGCCTGAAAGATGGATTAACAATGATGGTGAACTTGTCAATGAGAATCAATTCAAATATGCTGTCTTTAATGGGGGTCCAAGGTTTTGTTTGGGGAAGAAGTTTGCTTACATGCAAATGAAAGTGGTGGCTGCAGCTACTCTGCTCAGGTATGAAGTTAAGGTTATTGAAGGTCAAAATGTTGTTCCAAAGATGACAACCACACTTTACATGCAGAATGGGCTGCTGGTGAGTCTTAAGCCTAGGTTGGTGACTACTATTGTGTAA

Protein Analysis

520

Amino Acids

59.8

Weight (kDa)

8.39

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 78 - 500 1.9e-77 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13140 AT1G13140 AT1G13150 AT1G24540 AT3G26125
fragaria_vesca FvH4_4g25350
malus_domestica MD13G1104800.v1.1
prunus_persica Prupe.1G241700_v2.0.a1
pyrus_communis pycom13g09100
rosa_chinensis RchiOBHm_Chr4g0432631
rosa_laevigata RLG00000006828
rosa_multiflora Rmu_sc0004612.1_g000006
rosa_roxburghii Rroxscaffold_5G00374100
rosa_rugosa Rorug04G0260900.1
rosa_samantha Rh4BG323500 Rh4CG338600 Rh4DG319100
rosa_wichuraiana Rw4G027440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccIII TCCGGA 1 cut(s) 886
AclI AACGTT 1 cut(s) 282
AclWI GGATC 3 cut(s) 266, 266, 804
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 2 cut(s) 369, 1026
AcuI CTGAAG 3 cut(s) 77, 405, 1011
AfaI GTAC 4 cut(s) 290, 978, 1048, 1247
AfiI CCNNNNNNNGG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 1532
AgsI TTSAA 8 cut(s) 279, 376, 496, 653, 814, 1297, 1351, 1466
AluBI AGCT 6 cut(s) 391, 587, 667, 828, 945, 1433
AluI AGCT 6 cut(s) 391, 587, 667, 828, 945, 1433
Alw21I GWGCWC 3 cut(s) 483, 669, 1228
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 3 cut(s) 266, 266, 804
Ama87I CYCGRG 1 cut(s) 1227
Aor13HI TCCGGA 1 cut(s) 886
AoxI GGCC 3 cut(s) 67, 128, 1033
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 3 cut(s) 1427, 1430, 1519
ApoI RAATTY 2 cut(s) 369, 1026
ArsI GACNNNNNNTTYG 2 cut(s) 1344, 1376
Asp700I GAANNNNTTC 1 cut(s) 1346
AspA2I CCTAGG 1 cut(s) 1538
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 5 cut(s) 67, 116, 249, 613, 1373
AsuHPI GGTGA 7 cut(s) 94, 802, 1053, 1082, 1337, 1537, 1558
AsuII TTCGAA 1 cut(s) 735
AvaI CYCGRG 1 cut(s) 1227
AvaII GGWCC 4 cut(s) 116, 249, 613, 1373
AvrII CCTAGG 1 cut(s) 1538
BaeGI GKGCMC 1 cut(s) 483
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 669
BarI GAAGNNNNNNTAC 2 cut(s) 1388, 1420
Bbv12I GWGCWC 3 cut(s) 483, 669, 1228
BbvI GCAGC 3 cut(s) 1414, 1442, 1506
BccI CCATC 9 cut(s) 58, 182, 359, 496, 1061, 1099, 1196, 1302, 1316
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BclI TGATCA 1 cut(s) 201
BfaI CTAG 1 cut(s) 1539
BfmI CTRYAG 2 cut(s) 948, 1428
BfoI RGCGCY 1 cut(s) 1042
BfrI CTTAAG 1 cut(s) 1532
BisI GCNGC 3 cut(s) 1428, 1431, 1520
BlnI CCTAGG 1 cut(s) 1538
BlsI GCNGC 3 cut(s) 1429, 1432, 1521
Bme18I GGWCC 4 cut(s) 116, 249, 613, 1373
BmeT110I CYCGRG 1 cut(s) 1227
BmgT120I GGNCC 5 cut(s) 67, 116, 249, 613, 1373
BmiI GGNNCC 4 cut(s) 250, 251, 690, 1374
BmsI GCATC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 1442
Bpu14I TTCGAA 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 731, 1082
BsaJI CCNNGG 6 cut(s) 192, 253, 660, 1251, 1376, 1538
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 35, 131, 1154
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 886
BseDI CCNNGG 6 cut(s) 192, 253, 660, 1251, 1376, 1538
BseGI GGATG 3 cut(s) 52, 370, 985
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 1456
BseNI ACTGG 3 cut(s) 35, 131, 1154
BseRI GAGGAG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 3 cut(s) 1414, 1442, 1506
BshFI GGCC 3 cut(s) 69, 130, 1035
BshNI GGYRCC 1 cut(s) 688
BsiHKAI GWGCWC 3 cut(s) 483, 669, 1228
BsiHKCI CYCGRG 1 cut(s) 1227
BsiSI CCGG 1 cut(s) 887
BslFI GGGAC 3 cut(s) 235, 950, 1290
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 3 cut(s) 235, 950, 1290
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 3 cut(s) 69, 130, 1035
BsoBI CYCGRG 1 cut(s) 1227
Bsp119I TTCGAA 1 cut(s) 735
Bsp1286I GDGCHC 3 cut(s) 483, 669, 1228
Bsp13I TCCGGA 1 cut(s) 886
Bsp143I GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
Bsp19I CCATGG 2 cut(s) 192, 1251
BspANI GGCC 3 cut(s) 69, 130, 1035
BspCNI CTCAG 1 cut(s) 1455
BspEI TCCGGA 1 cut(s) 886
BspHI TCATGA 2 cut(s) 349, 541
BspLI GGNNCC 4 cut(s) 250, 251, 690, 1374
BspMAI CTGCAG 1 cut(s) 1432
BspPI GGATC 3 cut(s) 266, 266, 804
BspT104I TTCGAA 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 1532
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 3 cut(s) 35, 131, 1154
BssECI CCNNGG 6 cut(s) 192, 253, 660, 1251, 1376, 1538
BssMI GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
BssT1I CCWWGG 4 cut(s) 192, 1251, 1376, 1538
Bst4CI ACNGT 4 cut(s) 790, 869, 1078, 1087
Bst6I CTCTTC 1 cut(s) 809
BstAFI CTTAAG 1 cut(s) 1532
BstBI TTCGAA 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 89, 1037, 1289
BstDEI CTNAG 2 cut(s) 899, 1442
BstDSI CCRYGG 4 cut(s) 192, 253, 660, 1251
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 3 cut(s) 52, 370, 985
BstH2I RGCGCY 1 cut(s) 1042
BstHHI GCGC 1 cut(s) 1041
BstKTI GATC 7 cut(s) 204, 261, 274, 538, 799, 838, 847
BstMBI GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
BstMWI GCNNNNNNNGC 4 cut(s) 593, 909, 1297, 1516
BstNSI RCATGY 4 cut(s) 295, 1246, 1411, 1510
BstPI GGTNACC 1 cut(s) 187
BstSFI CTRYAG 2 cut(s) 948, 1428
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 1414, 1442, 1506
BsuRI GGCC 3 cut(s) 69, 130, 1035
BtgI CCRYGG 4 cut(s) 192, 253, 660, 1251
BtsCI GGATG 3 cut(s) 52, 370, 985
BtsI GCAGTG 1 cut(s) 1128
BtsIMutI CAGTG 4 cut(s) 874, 1092, 1128, 1161
Cac8I GCNNGC 3 cut(s) 89, 1037, 1289
CciI TCATGA 2 cut(s) 349, 541
CfoI GCGC 1 cut(s) 1041
Cfr13I GGNCC 5 cut(s) 67, 116, 249, 613, 1373
Csp6I GTAC 4 cut(s) 289, 977, 1047, 1246
CviQI GTAC 4 cut(s) 289, 977, 1047, 1246
DdeI CTNAG 2 cut(s) 899, 1442
DpnI GATC 7 cut(s) 203, 260, 273, 537, 798, 837, 846
DpnII GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 809
EarI CTCTTC 1 cut(s) 809
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 192, 1251, 1376, 1538
Eco24I GRGCYC 1 cut(s) 669
Eco47I GGWCC 4 cut(s) 116, 249, 613, 1373
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 3 cut(s) 77, 405, 1011
Eco88I CYCGRG 1 cut(s) 1227
Eco91I GGTNACC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 667
EcoO109I RGGNCCY 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 187
EcoT14I CCWWGG 4 cut(s) 192, 1251, 1376, 1538
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 4 cut(s) 192, 1251, 1376, 1538
FaqI GGGAC 3 cut(s) 235, 950, 1290
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 1428, 1431, 1520
FokI GGATG 3 cut(s) 59, 377, 972
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 3 cut(s) 1428, 1431, 1520
FspBI CTAG 1 cut(s) 1539
GlaI GCGC 1 cut(s) 1040
GluI GCNGC 3 cut(s) 1428, 1431, 1520
HaeII RGCGCY 1 cut(s) 1042
HaeIII GGCC 3 cut(s) 69, 130, 1035
HapII CCGG 1 cut(s) 887
HhaI GCGC 1 cut(s) 1041
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HinfI GANTC 8 cut(s) 22, 599, 681, 1058, 1133, 1265, 1342, 1528
HpaII CCGG 1 cut(s) 887
HphI GGTGA 7 cut(s) 94, 802, 1053, 1082, 1337, 1537, 1558
Hpy166II GTNNAC 4 cut(s) 102, 481, 561, 1328
Hpy188I TCNGA 8 cut(s) 27, 96, 120, 201, 245, 424, 680, 1132
Hpy188III TCNNGA 6 cut(s) 350, 542, 887, 989, 1099, 1199
Hpy8I GTNNAC 4 cut(s) 102, 481, 561, 1328
HpyAV CCTTC 6 cut(s) 285, 391, 787, 795, 927, 1460
HpyCH4III ACNGT 4 cut(s) 790, 869, 1078, 1087
HpyCH4IV ACGT 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 4 cut(s) 593, 909, 1297, 1516
HpyF3I CTNAG 2 cut(s) 899, 1442
HpySE526I ACGT 1 cut(s) 282
HspAI GCGC 1 cut(s) 1039
KflI GGGWCCC 1 cut(s) 249
Kpn2I TCCGGA 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
LmnI GCTCC 2 cut(s) 400, 664
Lsp1109I GCAGC 3 cut(s) 1414, 1442, 1506
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 1539
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 187, 1205, 1546
MalI GATC 7 cut(s) 203, 260, 273, 537, 798, 837, 846
MboI GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
MboII GAAGA 8 cut(s) 530, 545, 665, 826, 1103, 1114, 1196, 1405
MfeI CAATTG 2 cut(s) 267, 1161
MhlI GDGCHC 3 cut(s) 483, 669, 1228
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 8 cut(s) 267, 313, 369, 726, 809, 1026, 1161, 1346
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 2 cut(s) 1274, 1537
Mox20I TGGCCA 1 cut(s) 130
Mph1103I ATGCAT 1 cut(s) 432
MroI TCCGGA 1 cut(s) 886
MroXI GAANNNNTTC 1 cut(s) 1346
MscI TGGCCA 1 cut(s) 130
MseI TTAA 6 cut(s) 830, 1139, 1314, 1365, 1455, 1533
MslI CAYNNNNRTG 1 cut(s) 1412
Msp20I TGGCCA 1 cut(s) 130
MspCI CTTAAG 1 cut(s) 1532
MspI CCGG 1 cut(s) 887
MunI CAATTG 2 cut(s) 267, 1161
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 4 cut(s) 593, 909, 1297, 1516
NcoI CCATGG 2 cut(s) 192, 1251
NdeII GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
NlaIV GGNNCC 4 cut(s) 250, 251, 690, 1374
NmuCI GTSAC 1 cut(s) 1546
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 4 cut(s) 295, 1246, 1411, 1510
NspV TTCGAA 1 cut(s) 735
PaeR7I CTCGAG 1 cut(s) 1227
PagI TCATGA 2 cut(s) 349, 541
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 1346
PfeI GAWTC 6 cut(s) 22, 599, 681, 1058, 1133, 1342
PkrI GCNGC 3 cut(s) 1429, 1432, 1521
PleI GAGTC 2 cut(s) 1273, 1536
PpsI GAGTC 2 cut(s) 1273, 1536
PpuMI RGGWCCY 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 669
Psp1406I AACGTT 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 187
PspN4I GGNNCC 4 cut(s) 250, 251, 690, 1374
PspPI GGNCC 5 cut(s) 67, 116, 249, 613, 1373
PspPPI RGGWCCY 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 1227
PstI CTGCAG 1 cut(s) 1432
RsaI GTAC 4 cut(s) 290, 978, 1048, 1247
RsaNI GTAC 4 cut(s) 289, 977, 1047, 1246
RseI CAYNNNNRTG 1 cut(s) 1412
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 6 cut(s) 830, 1139, 1314, 1365, 1455, 1533
SatI GCNGC 3 cut(s) 1428, 1431, 1520
Sau3AI GATC 7 cut(s) 201, 258, 271, 535, 796, 835, 844
Sau96I GGNCC 5 cut(s) 67, 116, 249, 613, 1373
SchI GAGTC 2 cut(s) 1274, 1537
SduI GDGCHC 3 cut(s) 483, 669, 1228
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 948, 1428
Sfr274I CTCGAG 1 cut(s) 1227
SfuI TTCGAA 1 cut(s) 735
SinI GGWCC 4 cut(s) 116, 249, 613, 1373
SlaI CTCGAG 1 cut(s) 1227
SmiMI CAYNNNNRTG 1 cut(s) 1412
SmlI CTYRAG 4 cut(s) 746, 1097, 1227, 1532
SmoI CTYRAG 4 cut(s) 746, 1097, 1227, 1532
Sse9I AATT 8 cut(s) 267, 313, 369, 726, 809, 1026, 1161, 1346
SspMI CTAG 1 cut(s) 1539
SstI GAGCTC 1 cut(s) 669
StyI CCWWGG 4 cut(s) 192, 1251, 1376, 1538
TaaI ACNGT 4 cut(s) 790, 869, 1078, 1087
TaiI ACGT 1 cut(s) 285
TaqI TCGA 5 cut(s) 735, 799, 1228, 1258, 1268
TasI AATT 8 cut(s) 267, 313, 369, 726, 809, 1026, 1161, 1346
TatI WGTACW 2 cut(s) 288, 1245
TfiI GAWTC 6 cut(s) 22, 599, 681, 1058, 1133, 1342
Tru1I TTAA 6 cut(s) 830, 1139, 1314, 1365, 1455, 1533
Tru9I TTAA 6 cut(s) 830, 1139, 1314, 1365, 1455, 1533
TscAI CASTG 4 cut(s) 874, 1092, 1128, 1161
TseFI GTSAC 1 cut(s) 1546
TseI GCWGC 3 cut(s) 1427, 1430, 1519
Tsp45I GTSAC 1 cut(s) 1546
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 4 cut(s) 874, 1092, 1128, 1161
Vha464I CTTAAG 1 cut(s) 1532
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 4 cut(s) 116, 249, 613, 1373
XapI RAATTY 2 cut(s) 369, 1026
XceI RCATGY 4 cut(s) 295, 1246, 1411, 1510
XcmI CCANNNNNNNNNTGG 3 cut(s) 472, 699, 1258
XhoI CTCGAG 1 cut(s) 1227
XmaJI CCTAGG 1 cut(s) 1538
XmnI GAANNNNTTC 1 cut(s) 1346
XspI CTAG 1 cut(s) 1539
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.