AT1G24600

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
8720309 .. 8720721
413 bp
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UTR
Exon/CDS
Intron
AT1G24600.1

Sequence Viewer

Length: 219 bp
ATGGAGAAGAAGGCCAATCATGGAGATGATGTGCAAGAGAGTGTTCCTATTATCCATAGCCAAGTCGTGAAGATCAAAAGGGAGTTTGAGAAGATACAACACCCGTCACTAAAGCAGCCTGAGATGCCGTTAGTGTTCCGCGAGATCATGGGTCCACGTCGTTCCCGTTCTCCCCTCGGTTTAGGAGAGCGAGAGAGATCAATCCCGGTTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.27

Weight (kDa)

9.69

Isoelectric Point (pI)

71.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 206
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
BseDI CCNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 72, 144, 197
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 72, 144, 197
BstDEI CTNAG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 75, 147, 200
BstMBI GATC 3 cut(s) 72, 144, 197
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 14
BtrI CACGTC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 2 cut(s) 20, 148
CviJI RGCY 3 cut(s) 14, 60, 118
CviKI_1 RGCY 3 cut(s) 14, 60, 118
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 74, 146, 199
DpnII GATC 3 cut(s) 72, 144, 197
Eco47I GGWCC 1 cut(s) 152
FaeI CATG 2 cut(s) 23, 151
FaiI YATR 3 cut(s) 21, 57, 149
FatI CATG 2 cut(s) 19, 147
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 23, 151
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 23, 151
Kzo9I GATC 3 cut(s) 72, 144, 197
LpnPI CCDG 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 105
MalI GATC 3 cut(s) 74, 146, 199
MboI GATC 3 cut(s) 72, 144, 197
MboII GAAGA 3 cut(s) 19, 82, 103
MluCI AATT 1 cut(s) 214
MnlI CCTC 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 206
NdeII GATC 3 cut(s) 72, 144, 197
NlaIII CATG 2 cut(s) 23, 151
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PkrI GCNGC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 3 cut(s) 72, 144, 197
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 206
SetI ASST 1 cut(s) 160
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 204
TaiI ACGT 1 cut(s) 160
TasI AATT 1 cut(s) 214
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.