RLG00000005480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007754
Physical Location & Seq
Forward (+)
67980117 .. 67982690
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005480

Sequence Viewer

Length: 600 bp
ATGCCTTGCAAACCTTCCGCCAGTCCGACTTGCCTTGCAGCCTCAGCAGCCATGACACTTCGTTCAACAGCCACCGTCACAAATGCCACCACGCACCAAGAGGACAAAACAACAGCTCTAGAAAGTAGAAGACACAGACCCTTGCATTCGAGCTGCCATCTGACTCTATCAGGATGCTCTCGTTGCCTCCGTTATCTGAAAACAACAACCAGATTTCGTCGACTATCCGCCAGCACCCAAGCACCAGCTATAACGACACTTCAACTAGAACACAGCCGACACCACCACAGTGCAACCATCGAACCAACTATCTCACGAAACCAGGGTCCAAAAGGGTCGACTAGGTCTCAAGCTGATCCAGAGATGGAGAAGAGGAACAGCAACAACAACAGGGATATGGAAGGGTTCGAGGAGATGGGTGTTCCAGTTCACAGCCAAGTGAGGAAGATCAAGCAAGAATCGGAGAAAGTCATCGACTGGTTGCCGGGAAAGCCGGAGATGAGACCTGTGCTCAGAGAGATCACCGTCACGACGACCAGGCAGCTCTCTCGATCTCCTTTGGGGATTTCTCGCAGGCCAATCTCCGTCGGTGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

10.18

Isoelectric Point (pI)

72.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 220, 338
AciI CCGC 2 cut(s) 18, 228
AclWI GGATC 1 cut(s) 350
AgsI TTSAA 2 cut(s) 66, 263
AjnI CCWGG 2 cut(s) 321, 536
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 5 cut(s) 116, 153, 248, 353, 544
AluI AGCT 5 cut(s) 116, 153, 248, 353, 544
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 351, 496
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 4 cut(s) 38, 47, 153, 541
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 513
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 50, 59, 140, 553
BccI CCATC 4 cut(s) 165, 305, 358, 409
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 323, 538
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 351, 496
BfaI CTAG 3 cut(s) 119, 266, 342
BisI GCNGC 4 cut(s) 39, 48, 154, 542
BlsI GCNGC 4 cut(s) 40, 49, 155, 543
Bme1390I CCNGG 3 cut(s) 323, 486, 538
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 323, 486, 538
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 486
BsaI GGTCTC 2 cut(s) 351, 496
BsaJI CCNNGG 1 cut(s) 322
Bse1I ACTGG 3 cut(s) 21, 425, 482
BseBI CCWGG 2 cut(s) 323, 538
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 179
BseMII CTCAG 2 cut(s) 57, 526
BseNI ACTGG 3 cut(s) 21, 425, 482
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 4 cut(s) 50, 59, 140, 553
BshFI GGCC 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 2 cut(s) 485, 494
BsmAI GTCTC 2 cut(s) 351, 496
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 577
Bso31I GGTCTC 2 cut(s) 351, 496
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 355, 447, 519, 551
BspACI CCGC 2 cut(s) 18, 228
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 2 cut(s) 56, 525
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 350
BspTNI GGTCTC 2 cut(s) 351, 496
BsrI ACTGG 3 cut(s) 21, 425, 482
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 4 cut(s) 355, 447, 519, 551
Bst2UI CCWGG 2 cut(s) 323, 538
Bst4CI ACNGT 3 cut(s) 76, 290, 526
Bst6I CTCTTC 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 232, 575
BstDEI CTNAG 3 cut(s) 43, 512, 597
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 4 cut(s) 358, 450, 522, 554
BstMAI GTCTC 2 cut(s) 351, 496
BstMBI GATC 4 cut(s) 355, 447, 519, 551
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 183, 490
BstNI CCWGG 2 cut(s) 323, 538
BstSCI CCNGG 3 cut(s) 321, 484, 536
BstV1I GCAGC 4 cut(s) 50, 59, 140, 553
BstV2I GAAGAC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 577
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 232, 575
Cfr13I GGNCC 1 cut(s) 326
CviAII CATG 1 cut(s) 52
DdeI CTNAG 3 cut(s) 43, 512, 597
DpnI GATC 4 cut(s) 357, 449, 521, 553
DpnII GATC 4 cut(s) 355, 447, 519, 551
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 2 cut(s) 7, 217
Eco31I GGTCTC 2 cut(s) 351, 496
Eco47I GGWCC 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 321, 536
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 251, 398
FatI CATG 1 cut(s) 51
FblI GTMKAC 2 cut(s) 220, 338
Fnu4HI GCNGC 4 cut(s) 39, 48, 154, 542
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 4 cut(s) 39, 48, 154, 542
FspBI CTAG 3 cut(s) 119, 266, 342
GluI GCNGC 4 cut(s) 39, 48, 154, 542
HaeIII GGCC 1 cut(s) 577
HapII CCGG 2 cut(s) 485, 494
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 2 cut(s) 221, 339
HindII GTYRAC 2 cut(s) 221, 339
HinfI GANTC 3 cut(s) 163, 458, 593
HpaII CCGG 2 cut(s) 485, 494
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 3 cut(s) 221, 339, 430
Hpy188I TCNGA 5 cut(s) 27, 162, 198, 463, 515
Hpy188III TCNNGA 6 cut(s) 119, 171, 315, 359, 529, 549
Hpy8I GTNNAC 3 cut(s) 221, 339, 430
Hpy99I CGWCG 3 cut(s) 222, 535, 590
HpyAV CCTTC 2 cut(s) 24, 395
HpyCH4III ACNGT 3 cut(s) 76, 290, 526
HpyCH4V TGCA 4 cut(s) 9, 38, 145, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 183, 490
HpyF3I CTNAG 3 cut(s) 43, 512, 597
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 4 cut(s) 355, 447, 519, 551
Lsp1109I GCAGC 4 cut(s) 50, 59, 140, 553
LweI GCATC 1 cut(s) 164
MaeI CTAG 3 cut(s) 119, 266, 342
MaeIII GTNAC 3 cut(s) 76, 526, 590
MalI GATC 4 cut(s) 357, 449, 521, 553
MboI GATC 4 cut(s) 355, 447, 519, 551
MboII GAAGA 3 cut(s) 141, 382, 457
MhlI GDGCHC 1 cut(s) 513
MlyI GAGTC 2 cut(s) 157, 587
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 6 cut(s) 52, 94, 197, 366, 403, 435
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 2 cut(s) 485, 494
MspR9I CCNGG 3 cut(s) 323, 486, 538
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 2 cut(s) 323, 538
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 183, 490
NciI CCSGG 1 cut(s) 486
NdeII GATC 4 cut(s) 355, 447, 519, 551
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 76, 526, 590
OliI CACNNNNGTG 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 40, 49, 155, 543
PleI GAGTC 2 cut(s) 157, 587
PpsI GAGTC 2 cut(s) 157, 587
Psp6I CCWGG 2 cut(s) 321, 536
PspGI CCWGG 2 cut(s) 321, 536
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 288
SalI GTCGAC 2 cut(s) 219, 337
SatI GCNGC 4 cut(s) 39, 48, 154, 542
Sau3AI GATC 4 cut(s) 355, 447, 519, 551
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 157, 587
ScrFI CCNGG 3 cut(s) 323, 486, 538
SduI GDGCHC 1 cut(s) 513
SetI ASST 8 cut(s) 16, 118, 155, 250, 347, 355, 508, 546
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SsiI CCGC 2 cut(s) 18, 228
SspMI CTAG 3 cut(s) 119, 266, 342
StyD4I CCNGG 3 cut(s) 321, 484, 536
TaaI ACNGT 3 cut(s) 76, 290, 526
TaqI TCGA 7 cut(s) 149, 220, 300, 338, 408, 474, 550
TfiI GAWTC 1 cut(s) 458
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 3 cut(s) 76, 526, 590
TseI GCWGC 4 cut(s) 38, 47, 153, 541
Tsp45I GTSAC 3 cut(s) 76, 526, 590
TspGWI ACGGA 2 cut(s) 179, 574
TspRI CASTG 1 cut(s) 295
Tth111I GACNNNGTC 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 118
XmiI GTMKAC 2 cut(s) 220, 338
XspI CTAG 3 cut(s) 119, 266, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.