Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007754

Physical Location & Seq

Genomic Coordinates Forward (+)

10091077 .. 10092051

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGGATGGAGAAGAGGAACAGCAACAACAACAGGGACATGGAAGGGTTTGAGGAGATGGGTGTTCCAGTTCACAGCCAGGTGAGGAAGATCAAACAAGAATCGGAGAAAGTCATCGACTGGTTGCCGGGGAAGCCGGAGATGAGACCTGTGCTAAGAGAGATCAACGTCACGACGACCAGGCAGCTCTCTCGATCTCCTTTGGGGATTTCTCGCAGGCCAATCTCTGTCGGTGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.26

Weight (kDa)

10.13

Isoelectric Point (pI)

71.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24600 AT1G67920
fragaria_vesca	FvH4_4g33670 FvH4_5g17640
malus_domestica	MD16G1019400.v1.1
prunus_persica	Prupe.1G332700_v2.0.a1 Prupe.5G236200_v2.0.a1
pyrus_communis	pycom06g20600 pycom16g01740
rosa_chinensis	RchiOBHm_Chr4g0443131 RchiOBHm_Chr7g0178031
rosa_laevigata	RLG00000005480
rosa_multiflora	Rmu_sc0007968.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275270 Rroxscaffold_5G00383750
rosa_rugosa	Rorug04G0344600 Rorug06G0412400
rosa_samantha	Rh4DG405600 Rh7AG012000 Rh7BG011400 Rh7CG012000 Rh7DG012100
rosa_wichuraiana	Rw4G034400 Rw7G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	2 cut(s)	78, 179
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	80, 181
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	241
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	3 cut(s)	80, 129, 181
BmrFI	CCNGG	3 cut(s)	80, 129, 181
BpuMI	CCSGG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	68, 125
BseBI	CCWGG	2 cut(s)	80, 181
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	68, 125
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	128, 137
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	90, 162, 194
BspANI	GGCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	68, 125
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	3 cut(s)	90, 162, 194
Bst2UI	CCWGG	2 cut(s)	80, 181
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	3 cut(s)	93, 165, 197
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	90, 162, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	2 cut(s)	80, 181
BstSCI	CCNGG	3 cut(s)	78, 127, 179
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	4 cut(s)	78, 136, 187, 220
CviKI_1	RGCY	4 cut(s)	78, 136, 187, 220
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	92, 164, 196
DpnII	GATC	3 cut(s)	90, 162, 194
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	78, 179
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	241
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	128, 137
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	2 cut(s)	101, 236
HpaII	CCGG	2 cut(s)	128, 137
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	172, 192
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	90, 162, 194
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	241
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	169, 233
MalI	GATC	3 cut(s)	92, 164, 196
MboI	GATC	3 cut(s)	90, 162, 194
MboII	GAAGA	2 cut(s)	25, 100
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	9, 46, 78
MspI	CCGG	2 cut(s)	128, 137
MspR9I	CCNGG	3 cut(s)	80, 129, 181
MvaI	CCWGG	2 cut(s)	80, 181
MwoI	GCNNNNNNNGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	90, 162, 194
NlaIII	CATG	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	169, 233
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	78, 179
PspGI	CCWGG	2 cut(s)	78, 179
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	90, 162, 194
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	80, 129, 181
SetI	ASST	4 cut(s)	84, 151, 171, 189
SspMI	CTAG	1 cut(s)	241
StyD4I	CCNGG	3 cut(s)	78, 127, 179
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	117, 193
TfiI	GAWTC	1 cut(s)	101
TseFI	GTSAC	2 cut(s)	169, 233
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	2 cut(s)	169, 233
XspI	CTAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.