Rh4DG405600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007754
Physical Location & Seq
Reverse (-)
61982069 .. 61982331
263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG405600.1

Sequence Viewer

Length: 219 bp
ATGAGGATCAAGCAAGAGTTCGAGAAAATAAAGCACCCTTCTCTGTCTATGGAGCCGCCGGCAGAGATGAGACGTCTGCTTCTCCGGGAGATTAACGGGCAGCGGTCTCGTTCGCCCCTCGGATTGGCAGCGCTTCTGTCCAACCAGAGTATTGGTGCTTGGTTGTTTGGGGTTCTATTTTGGTTTGTGTACAGTGGGAAACTCAGAGGGACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.34

Weight (kDa)

10.92

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
AciI CCGC 2 cut(s) 56, 103
AclWI GGATC 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 1 cut(s) 191
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 64, 111
AlwI GGATC 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 100, 128
AspLEI GCGC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 86
BbvI GCAGC 2 cut(s) 112, 140
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 64, 111
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 3 cut(s) 56, 101, 129
BlsI GCNGC 3 cut(s) 57, 102, 130
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 112, 140
BsiSI CCGG 2 cut(s) 59, 85
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 64, 111
BsmBI CGTCTC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 56, 103
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 64, 111
BstMBI GATC 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 112, 140
BstXI CCANNNNNNTGG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 58
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 213
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 50, 214
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 3 cut(s) 56, 101, 129
Fsp4HI GCNGC 3 cut(s) 56, 101, 129
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 56, 101, 129
HaeII RGCGCY 1 cut(s) 134
HapII CCGG 2 cut(s) 59, 85
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HpaII CCGG 2 cut(s) 59, 85
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 122, 206
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 72, 98, 158
Lsp1109I GCAGC 2 cut(s) 112, 140
MaeII ACGT 1 cut(s) 73
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 128, 200
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 59, 85
MspR9I CCNGG 1 cut(s) 86
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 3 cut(s) 57, 102, 130
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 3 cut(s) 56, 101, 129
Sau3AI GATC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 86
SetI ASST 1 cut(s) 76
SsiI CCGC 2 cut(s) 56, 103
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 100, 128
TspRI CASTG 1 cut(s) 199
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.