Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007754

Physical Location & Seq

Genomic Coordinates Reverse (-)

1410110 .. 1410358

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1019400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGAACAAGAACATCACCACCAAGACGACGGGCGAAAACAACGACGACAACGGGAGCATGGACGAAGAGGGGACCTACAGCTACATGGCTGTCCCAATTCACAGCCAAGTGATGAAGATCAAGCAGGAGTTTGAGAAGATCAAGCACCCGTCTCTGCAGCAGCCTGCAGAGGCGAGGCTGAGACGCGTGATTATGCGGGAGATTACCCGGCAGCGCTCGCGTTCGCCGCTGGGGCTGGCCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.43

Weight (kDa)

9.15

Isoelectric Point (pI)

75.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24600 AT1G67920
fragaria_vesca	FvH4_4g33670 FvH4_5g17640
malus_domestica	MD16G1019400.v1.1
prunus_persica	Prupe.1G332700_v2.0.a1 Prupe.5G236200_v2.0.a1
pyrus_communis	pycom06g20600 pycom16g01740
rosa_chinensis	RchiOBHm_Chr4g0443131 RchiOBHm_Chr7g0178031
rosa_laevigata	RLG00000005480
rosa_multiflora	Rmu_sc0007968.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275270 Rroxscaffold_5G00383750
rosa_rugosa	Rorug04G0344600 Rorug06G0412400
rosa_samantha	Rh4DG405600 Rh7AG012000 Rh7BG011400 Rh7CG012000 Rh7DG012100
rosa_wichuraiana	Rw4G034400 Rw7G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	189, 223
AciI	CCGC	2 cut(s)	199, 230
AcoI	YGGCCR	1 cut(s)	240
AfeI	AGCGCT	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	187
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	159, 178
Aor51HI	AGCGCT	1 cut(s)	218
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	160, 163, 214
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	172, 175, 226
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	159, 178
BfmI	CTRYAG	3 cut(s)	79, 158, 168
BfoI	RGCGCY	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	161, 164, 215, 230
BlsI	GCNGC	4 cut(s)	162, 165, 216, 231
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	172, 175, 226
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	2 cut(s)	189, 223
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	80, 88
BsmAI	GTCTC	2 cut(s)	159, 178
BsmBI	CGTCTC	2 cut(s)	159, 178
BsmFI	GGGAC	2 cut(s)	80, 88
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	120, 141
BspACI	CCGC	2 cut(s)	199, 230
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	189, 223
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	2 cut(s)	162, 172
BssMI	GATC	2 cut(s)	120, 141
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	168, 221, 240
BstDEI	CTNAG	1 cut(s)	182
BstFNI	CGCG	2 cut(s)	189, 223
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	123, 144
BstMAI	GTCTC	2 cut(s)	159, 178
BstMBI	GATC	2 cut(s)	120, 141
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 229, 235
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	3 cut(s)	79, 158, 168
BstUI	CGCG	2 cut(s)	189, 223
BstV1I	GCAGC	3 cut(s)	172, 175, 226
BsuRI	GGCC	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	168, 221, 240
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	195
CviAII	CATG	2 cut(s)	61, 88
CviJI	RGCY	7 cut(s)	84, 92, 108, 166, 181, 238, 242
CviKI_1	RGCY	7 cut(s)	84, 92, 108, 166, 181, 238, 242
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	122, 143
DpnII	GATC	2 cut(s)	120, 141
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	75
Eco47III	AGCGCT	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	159, 178
FaeI	CATG	2 cut(s)	64, 91
FaiI	YATR	4 cut(s)	62, 89, 197, 247
FaqI	GGGAC	2 cut(s)	80, 88
FatI	CATG	2 cut(s)	60, 87
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	4 cut(s)	161, 164, 215, 230
Fsp4HI	GCNGC	4 cut(s)	161, 164, 215, 230
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	4 cut(s)	161, 164, 215, 230
GsaI	CCCAGC	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	64, 91
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	34, 50
HpyCH4V	TGCA	2 cut(s)	160, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 229, 235
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	64, 91
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	120, 141
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	113, 180, 218, 224, 224
Lsp1109I	GCAGC	3 cut(s)	172, 175, 226
MalI	GATC	2 cut(s)	122, 143
MboI	GATC	2 cut(s)	120, 141
MboII	GAAGA	3 cut(s)	80, 130, 151
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	1 cut(s)	99
MluI	ACGCGT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	242
MnlI	CCTC	3 cut(s)	64, 166, 171
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	189, 223
MwoI	GCNNNNNNNGC	3 cut(s)	220, 229, 235
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	2 cut(s)	120, 141
NlaIII	CATG	2 cut(s)	64, 91
NlaIV	GGNNCC	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	162, 165, 216, 231
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
PstI	CTGCAG	2 cut(s)	162, 172
SatI	GCNGC	4 cut(s)	161, 164, 215, 230
Sau3AI	GATC	2 cut(s)	120, 141
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	2 cut(s)	80, 86
SfcI	CTRYAG	3 cut(s)	79, 158, 168
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	2 cut(s)	199, 230
StyD4I	CCNGG	1 cut(s)	209
TasI	AATT	1 cut(s)	99
TauI	GCSGC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	160, 163, 214
TspDTI	ATGAA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.