Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Forward (+)

8903405 .. 8906455

Gene Structure 3051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATTGAACATGGGAACTCTACCTTTGATTACCGGAGTATTAGAGAAGTCGCTGCAAACGCCGGCGCCGGAGCCACCGCAGGGGCTATCGCGGCGACTTTTGTTTGTCCATTAGATGTGATCAAAACAAGGTTACAGGTTCTTGGTCTCCCTGAAGCTCCAGCCTCTGGTCAAAGAGGTGGTGTAATCATTACAAGTCTGAAGAATATAATTAAGGAAGAAGGTTATAGGGGAATGTATCGAGGGCTTTCACCAACCATCATAGCTCTCCTTCCAAATTGGGCTGTCTACTTCTCAGTTTATGGGAAGCTAAAGGATGTGCTGCAGTCAAGTGATGGCAAGCTTAGTATTGGGTCAAACATGATAGCTGCAGCTGGTGCTGGAGCTGCCACATCTATTGCAACTAATCCGCTTTGGGTTGTCAAGACAAGATTAATGACGCAAGGAATTAGGCCTGGTGTGGTACCTTACAAAAGTGTAATGTCTGCATTTAGTAGGATTTGTCATGAAGAAGGAGTGCGAGGGTTGTACAGTGGCATATTGCCTTCTTTGGCGGGAGTAAGCCATGTCGCGATCCAGTTTCCAGCTTATGAAAAAATTAAGCAATACATGGCAAAGATGGATAATACATCCGTGGAGAATCTGAGTCCTGGGAATGTTGCTATTGCCTCCTCCATCGCGAAAGTGATCGCCTCTATTTTGACTTACCCACACGAGGTAATTAGGGCGAAGCTTCAAGAACAAGGGCAGATTAGAAATGCTGAGACTAAGTATTCAGGAGTCATTGATTGCATCACAAAGGTGTTCAGAAGCGAAGGGATTCCTGGGTTGTACCGTGGATGTGCCACTAATCTACTGAGGACAACTCCATCAGCAGTTATTACATTTACAACCTATGAGATGATGCTTAGGTTTTTCCGACAAGTTGTGCCACCAGAGACTAATAGGTCGGATGATCGCAGAAGAGAAGAAGAAAGAAAGAATTTAGTTAGCCGACGAGGAGAAGAAGAAGATAAAGATTTGGGTTTGAGAGAATCACAAACTCAATCTAATAAGATCAGCACTCCCCATATCCCTCTTGGAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

363

Amino Acids

39.5

Weight (kDa)

9.51

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	17 - 110	1.9e-24	Mitochondrial carrier protein
Mito_carr	PF00153	114 - 206	4.6e-23	Mitochondrial carrier protein
Mito_carr	PF00153	215 - 307	1.1e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	946
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	65, 463
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	3 cut(s)	92, 572, 680
AciI	CCGC	4 cut(s)	78, 92, 410, 554
AclWI	GGATC	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	982
AcuI	CTGAAG	2 cut(s)	174, 221
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	465, 530, 833
AfiI	CCNNNNNNNGG	3 cut(s)	81, 167, 715
AgsI	TTSAA	2 cut(s)	8, 737
AjnI	CCWGG	3 cut(s)	454, 649, 823
AleI	CACNNNNGTG	1 cut(s)	800
AluBI	AGCT	9 cut(s)	158, 266, 310, 343, 368, 374, 386, 587, 733
AluI	AGCT	9 cut(s)	158, 266, 310, 343, 368, 374, 386, 587, 733
Alw26I	GTCTC	3 cut(s)	152, 758, 932
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	53, 322, 368, 371, 386
ApoI	RAATTY	1 cut(s)	982
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	819
Asp718I	GGTACC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	243
BanI	GGYRCC	2 cut(s)	65, 463
BauI	CACGAG	1 cut(s)	713
BbvI	GCAGC	5 cut(s)	40, 309, 355, 373, 383
BccI	CCATC	5 cut(s)	266, 329, 613, 683, 877
BciT130I	CCWGG	3 cut(s)	456, 651, 825
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	152, 758, 932
BfmI	CTRYAG	2 cut(s)	323, 369
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	54, 93, 323, 369, 372, 387
BlsI	GCNGC	6 cut(s)	55, 94, 324, 370, 373, 388
Bme1390I	CCNGG	3 cut(s)	456, 651, 825
BmiI	GGNNCC	3 cut(s)	67, 73, 465
BmrFI	CCNGG	3 cut(s)	456, 651, 825
BmsI	GCATC	2 cut(s)	801, 894
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
BpmI	CTGGAG	2 cut(s)	144, 402
Bpu10I	CCTNAGC	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	633, 650, 824, 835
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 167, 715
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	3 cut(s)	456, 651, 825
BseDI	CCNNGG	4 cut(s)	633, 650, 824, 835
BseGI	GGATG	4 cut(s)	322, 629, 845, 958
BseLI	CCNNNNNNNGG	3 cut(s)	81, 167, 715
BseMII	CTCAG	4 cut(s)	309, 635, 753, 848
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	2 cut(s)	661, 1014
BseXI	GCAGC	5 cut(s)	40, 309, 355, 373, 383
Bsh1236I	CGCG	3 cut(s)	92, 572, 680
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	2 cut(s)	65, 463
BsiSI	CCGG	3 cut(s)	34, 63, 69
BslI	CCNNNNNNNGG	3 cut(s)	81, 167, 715
BsmAI	GTCTC	3 cut(s)	152, 758, 932
BsnI	GGCC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	120, 573, 687, 955, 1056
Bsp68I	TCGCGA	2 cut(s)	572, 680
BspACI	CCGC	4 cut(s)	78, 92, 410, 554
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	4 cut(s)	308, 636, 754, 849
BspFNI	CGCG	3 cut(s)	92, 572, 680
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	67, 73, 465
BspMAI	CTGCAG	2 cut(s)	327, 373
BspPI	GGATC	1 cut(s)	568
BspT107I	GGYRCC	2 cut(s)	65, 463
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	633, 650, 824, 835
BssMI	GATC	5 cut(s)	120, 573, 687, 955, 1056
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	3 cut(s)	456, 651, 825
Bst4CI	ACNGT	2 cut(s)	533, 836
Bst6I	CTCTTC	1 cut(s)	958
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	64, 341
BstDEI	CTNAG	7 cut(s)	295, 344, 644, 762, 768, 857, 908
BstDSI	CCRYGG	2 cut(s)	633, 835
BstF5I	GGATG	4 cut(s)	322, 629, 845, 958
BstFNI	CGCG	3 cut(s)	92, 572, 680
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	5 cut(s)	123, 576, 690, 958, 1059
BstMAI	GTCTC	3 cut(s)	152, 758, 932
BstMBI	GATC	5 cut(s)	120, 573, 687, 955, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 92, 377, 386
BstNI	CCWGG	3 cut(s)	456, 651, 825
BstSCI	CCNGG	3 cut(s)	454, 649, 823
BstSFI	CTRYAG	2 cut(s)	323, 369
BstUI	CGCG	3 cut(s)	92, 572, 680
BstV1I	GCAGC	5 cut(s)	40, 309, 355, 373, 383
BsuRI	GGCC	1 cut(s)	454
BtgI	CCRYGG	2 cut(s)	633, 835
BtgZI	GCGATG	1 cut(s)	661
BtsCI	GGATG	4 cut(s)	322, 629, 845, 958
BtsIMutI	CAGTG	1 cut(s)	538
BtuMI	TCGCGA	2 cut(s)	572, 680
Cac8I	GCNNGC	2 cut(s)	64, 341
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	62
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	3 cut(s)	464, 529, 832
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	5 cut(s)	11, 361, 506, 566, 610
CviQI	GTAC	3 cut(s)	464, 529, 832
DdeI	CTNAG	7 cut(s)	295, 344, 644, 762, 768, 857, 908
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	5 cut(s)	122, 575, 689, 957, 1058
DpnII	GATC	5 cut(s)	120, 573, 687, 955, 1056
DrdI	GACNNNNNNGTC	1 cut(s)	946
DseDI	GACNNNNNNGTC	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	958
Eco147I	AGGCCT	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	152
Eco57I	CTGAAG	2 cut(s)	174, 221
EcoRII	CCWGG	3 cut(s)	454, 649, 823
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	5 cut(s)	14, 364, 509, 569, 613
FatI	CATG	5 cut(s)	10, 360, 505, 565, 609
FauI	CCCGC	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	6 cut(s)	54, 93, 323, 369, 372, 387
FokI	GGATG	4 cut(s)	329, 616, 852, 965
Fsp4HI	GCNGC	6 cut(s)	54, 93, 323, 369, 372, 387
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	54, 93, 323, 369, 372, 387
GsuI	CTGGAG	2 cut(s)	144, 402
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	3 cut(s)	34, 63, 69
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	14, 364, 509, 569, 613
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	341, 731
HinfI	GANTC	5 cut(s)	640, 646, 780, 820, 1034
HpaII	CCGG	3 cut(s)	34, 63, 69
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	201, 645, 809, 920, 952
Hpy188III	TCNNGA	6 cut(s)	424, 506, 571, 679, 737, 777
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	999
HpyAV	CCTTC	5 cut(s)	215, 281, 506, 555, 809
HpyCH4III	ACNGT	2 cut(s)	533, 836
HpyCH4V	TGCA	6 cut(s)	56, 325, 371, 401, 488, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 92, 377, 386
HpyF3I	CTNAG	7 cut(s)	295, 344, 644, 762, 768, 857, 908
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	14, 364, 509, 569, 613
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	467
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	120, 573, 687, 955, 1056
LmnI	GCTCC	3 cut(s)	71, 163, 383
Lsp1109I	GCAGC	5 cut(s)	40, 309, 355, 373, 383
LweI	GCATC	2 cut(s)	801, 894
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	5 cut(s)	122, 575, 689, 957, 1058
MboI	GATC	5 cut(s)	120, 573, 687, 955, 1056
MboII	GAAGA	9 cut(s)	214, 230, 521, 975, 980, 983, 1016, 1019, 1022
MluCI	AATT	6 cut(s)	210, 277, 447, 597, 720, 982
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	655, 789
MmeI	TCCRAC	2 cut(s)	930, 943
MreI	CGCCGGCG	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	3 cut(s)	213, 434, 600
MslI	CAYNNNNRTG	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	34, 63, 69
MspR9I	CCNGG	3 cut(s)	456, 651, 825
MvaI	CCWGG	3 cut(s)	456, 651, 825
MvnI	CGCG	3 cut(s)	92, 572, 680
MwoI	GCNNNNNNNGC	4 cut(s)	59, 92, 377, 386
NaeI	GCCGGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	5 cut(s)	120, 573, 687, 955, 1056
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	5 cut(s)	14, 364, 509, 569, 613
NlaIV	GGNNCC	3 cut(s)	67, 73, 465
NruI	TCGCGA	2 cut(s)	572, 680
OliI	CACNNNNGTG	1 cut(s)	800
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	640, 820, 1034
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	55, 94, 324, 370, 373, 388
PleI	GAGTC	2 cut(s)	654, 788
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	2 cut(s)	654, 788
PshBI	ATTAAT	1 cut(s)	434
Psp6I	CCWGG	3 cut(s)	454, 649, 823
PspGI	CCWGG	3 cut(s)	454, 649, 823
PspN4I	GGNNCC	3 cut(s)	67, 73, 465
PstI	CTGCAG	2 cut(s)	327, 373
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	374
RruI	TCGCGA	2 cut(s)	572, 680
RsaI	GTAC	3 cut(s)	465, 530, 833
RsaNI	GTAC	3 cut(s)	464, 529, 832
RseI	CAYNNNNRTG	1 cut(s)	800
SaqAI	TTAA	3 cut(s)	213, 434, 600
SatI	GCNGC	6 cut(s)	54, 93, 323, 369, 372, 387
Sau3AI	GATC	5 cut(s)	120, 573, 687, 955, 1056
SchI	GAGTC	2 cut(s)	655, 789
ScrFI	CCNGG	3 cut(s)	456, 651, 825
SfaNI	GCATC	2 cut(s)	801, 894
SfcI	CTRYAG	2 cut(s)	323, 369
SfoI	GGCGCC	1 cut(s)	67
SgrAI	CRCCGGYG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	800
Sse9I	AATT	6 cut(s)	210, 277, 447, 597, 720, 982
SseBI	AGGCCT	1 cut(s)	454
SsiI	CCGC	4 cut(s)	78, 92, 410, 554
SspDI	GGCGCC	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	454, 649, 823
TaaI	ACNGT	2 cut(s)	533, 836
TaqI	TCGA	1 cut(s)	241
TasI	AATT	6 cut(s)	210, 277, 447, 597, 720, 982
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	640, 820, 1034
Tru1I	TTAA	3 cut(s)	213, 434, 600
Tru9I	TTAA	3 cut(s)	213, 434, 600
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	5 cut(s)	53, 322, 368, 371, 386
TspDTI	ATGAA	2 cut(s)	522, 606
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	1 cut(s)	982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1076
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.