MD16G1039000.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
2753305 .. 2757383
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1039000.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGTGTTGTGGCCGAACATTCCGATCGCCAAACTATCAGAGATGTCATCTGCCACGCCGGTGCTGGCGCCTCCGCTGGTGCTATTGCGGCTACGTTTGTATGCCCCTTGGATGTCATCAAGACTAGGCTGCAGGTCCATGGCATGCCTTCTGGGCAAAGAGGTAGTATCATTGTCACAAGCCTACAAAAAATATTAAAGACTGAAGGTGTGAAGGGGATGTACCGGGGCCTTTCACCTACAATTCTAGCGCTACTTCCAAACTGGGCAGTGTACTTCACAGTTTATGAGCAACTCAAAGGCCTACTCCACACTCATGTTCATGGCATCGGAGAACTCACAATTGGTGAAAATATGATTGCTGCTGCTGGTGCCGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACACAAGGAATGAGGCCTGGTGTGATTCCTTACAAAAGCATGAGATCTGCTTTCTCAAGGATTGCAACTGAGGAAGGCTTGCGAGGTTTATATAGTGGGATCTTGCCTTCGTTGGCTGGCATAAGTCATGTTGCAATTCAATTTCCTGCTTATGAAAAGATAAAGTCTTTCATGGCAAAAAGGGATAATACAACTGTTGATAAGTTACACCCTAGTAGAGTTGCCTTTGCTTCATCAGTATCAAAAGTAATCGCTTCTGTAATAACATACCCTCACGAGGTTGTGCGCTCGAGGCTGCAAGAGCAAGGGCAGGCGAGACATATTGAACCCCAGTACGCAGGAGTTATTGACTGTATGAAGAAGGTGTTCCAAAAGGAAGGCCTTCGTGGATTCTATAATGGTTGTGCTACTAATCTACTAAGAACCACTCCTTCTGCCGTTATTACATTTACCAGCTACGAGATGATAGATAGGTTCTTGCGGAGGGTTGTACTTACAGAAAACGAGCACTCAGGTGGCCACCCTAAGTCTGATGGCCACGCCGAACCTCAGAAGGGAAATGGAGGCACCGAGAGAGAGGGGAATGACTCTGCATTGCGGCAAGCACAAGCCCAAACAAATCAGAGGACTCCACTTCCTCTTGGAAACAAAGACCCGCTAACGGCAAGACATTGA

Protein Analysis

369

Amino Acids

39.91

Weight (kDa)

9.71

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 18 - 105 1.8e-26 Mitochondrial carrier protein
Mito_carr PF00153 113 - 204 6.8e-23 Mitochondrial carrier protein
Mito_carr PF00153 213 - 306 2e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccB1I GGYRCC 3 cut(s) 68, 371, 998
AciI CCGC 5 cut(s) 75, 89, 913, 1030, 1088
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 3 cut(s) 12, 949, 967
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 4 cut(s) 224, 275, 767, 924
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 3 cut(s) 709, 986, 1093
AgsI TTSAA 4 cut(s) 396, 431, 572, 758
AjnI CCWGG 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AleI CACNNNNGTG 2 cut(s) 60, 945
AluBI AGCT 1 cut(s) 888
AluI AGCT 1 cut(s) 888
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 721
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 7 cut(s) 12, 229, 301, 446, 811, 949, 967
ApeKI GCWGC 5 cut(s) 130, 362, 365, 380, 727
Asp700I GAANNNNTTC 2 cut(s) 797, 813
AspLEI GCGC 3 cut(s) 71, 253, 720
AspS9I GGNCC 2 cut(s) 136, 229
AsuC2I CCSGG 2 cut(s) 227, 376
AsuHPI GGTGA 2 cut(s) 228, 359
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 2 cut(s) 951, 969
BanI GGYRCC 3 cut(s) 68, 371, 998
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BauI CACGAG 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 5 cut(s) 117, 349, 352, 367, 714
BccI CCATC 1 cut(s) 959
BceAI ACGGC 1 cut(s) 854
BciT130I CCWGG 1 cut(s) 450
BcnI CCSGG 2 cut(s) 227, 376
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 3 cut(s) 126, 248, 645
BfmI CTRYAG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 72, 254
BfuAI ACCTGC 1 cut(s) 124
BglI GCCNNNNNGGC 1 cut(s) 154
BglII AGATCT 1 cut(s) 476
BisI GCNGC 7 cut(s) 90, 131, 363, 366, 381, 728, 1031
BlsI GCNGC 7 cut(s) 91, 132, 364, 367, 382, 729, 1032
Bme1390I CCNGG 3 cut(s) 227, 376, 450
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 136, 229
BmiI GGNNCC 4 cut(s) 70, 230, 373, 1000
BmrFI CCNGG 3 cut(s) 227, 376, 450
BmrI ACTGGG 2 cut(s) 274, 757
BmsI GCATC 1 cut(s) 336
BmuI ACTGGG 2 cut(s) 274, 757
BpuEI CTTGAG 1 cut(s) 472
BpuMI CCSGG 2 cut(s) 227, 376
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 108, 139, 226, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 709, 986, 1093
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 269, 763
Bse3DI GCAATG 1 cut(s) 1025
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 4 cut(s) 108, 139, 226, 375
BseGI GGATG 2 cut(s) 118, 225
BseLI CCNNNNNNNGG 3 cut(s) 709, 986, 1093
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 3 cut(s) 492, 957, 995
BseNI ACTGG 2 cut(s) 269, 763
BseXI GCAGC 5 cut(s) 117, 349, 352, 367, 714
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 7 cut(s) 14, 231, 303, 448, 813, 951, 969
BshNI GGYRCC 3 cut(s) 68, 371, 998
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 3 cut(s) 60, 226, 375
BslI CCNNNNNNNGG 3 cut(s) 709, 986, 1093
BsmAI GTCTC 1 cut(s) 742
BsnI GGCC 7 cut(s) 14, 231, 303, 448, 813, 951, 969
BsoBI CYCGRG 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 3 cut(s) 25, 476, 531
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 5 cut(s) 75, 89, 913, 1030, 1088
BspANI GGCC 7 cut(s) 14, 231, 303, 448, 813, 951, 969
BspCNI CTCAG 3 cut(s) 493, 956, 994
BspLI GGNNCC 4 cut(s) 70, 230, 373, 1000
BspMAI CTGCAG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 3 cut(s) 68, 371, 998
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 269, 763
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 108, 139, 226, 375
BssMI GATC 3 cut(s) 25, 476, 531
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 707
BssT1I CCWWGG 2 cut(s) 108, 139
Bst2BI CACGAG 1 cut(s) 707
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 3 cut(s) 283, 628, 785
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 6 cut(s) 67, 146, 512, 550, 744, 1035
BstDEI CTNAG 5 cut(s) 501, 851, 943, 957, 981
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 118, 225
BstH2I RGCGCY 2 cut(s) 72, 254
BstHHI GCGC 3 cut(s) 71, 253, 720
BstKTI GATC 3 cut(s) 28, 479, 534
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 3 cut(s) 25, 476, 531
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 7 cut(s) 89, 154, 371, 380, 386, 724, 733
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 225, 374, 448
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 5 cut(s) 117, 349, 352, 367, 714
BstX2I RGATCY 2 cut(s) 476, 531
BstYI RGATCY 2 cut(s) 476, 531
BsuRI GGCC 7 cut(s) 14, 231, 303, 448, 813, 951, 969
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 118, 225
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 6 cut(s) 67, 146, 512, 550, 744, 1035
CfoI GCGC 3 cut(s) 71, 253, 720
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 136, 229
Csp6I GTAC 4 cut(s) 223, 274, 766, 923
CviAII CATG 7 cut(s) 140, 145, 317, 323, 472, 560, 604
CviQI GTAC 4 cut(s) 223, 274, 766, 923
DdeI CTNAG 5 cut(s) 501, 851, 943, 957, 981
DinI GGCGCC 1 cut(s) 70
DpnI GATC 3 cut(s) 27, 478, 533
DpnII GATC 3 cut(s) 25, 476, 531
EaeI YGGCCR 3 cut(s) 12, 949, 967
Eco130I CCWWGG 2 cut(s) 108, 139
Eco147I AGGCCT 3 cut(s) 303, 448, 813
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 721
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 108, 139
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 108, 139
FaeI CATG 7 cut(s) 143, 148, 320, 326, 475, 563, 607
FatI CATG 7 cut(s) 139, 144, 316, 322, 471, 559, 603
FauI CCCGC 1 cut(s) 1095
Fnu4HI GCNGC 7 cut(s) 90, 131, 363, 366, 381, 728, 1031
FokI GGATG 2 cut(s) 125, 232
Fsp4HI GCNGC 7 cut(s) 90, 131, 363, 366, 381, 728, 1031
FspBI CTAG 3 cut(s) 126, 248, 645
GlaI GCGC 3 cut(s) 70, 252, 719
GluI GCNGC 7 cut(s) 90, 131, 363, 366, 381, 728, 1031
HaeII RGCGCY 2 cut(s) 72, 254
HaeIII GGCC 7 cut(s) 14, 231, 303, 448, 813, 951, 969
HapII CCGG 3 cut(s) 60, 226, 375
HhaI GCGC 3 cut(s) 71, 253, 720
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 7 cut(s) 143, 148, 320, 326, 475, 563, 607
Hin6I GCGC 3 cut(s) 69, 251, 718
HinP1I GCGC 3 cut(s) 69, 251, 718
HinfI GANTC 4 cut(s) 457, 822, 1019, 1060
HpaII CCGG 3 cut(s) 60, 226, 375
HphI GGTGA 2 cut(s) 228, 359
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 25, 41, 332, 964, 984, 1056
Hpy188III TCNNGA 2 cut(s) 121, 707
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 283, 628, 785
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 5 cut(s) 133, 497, 566, 730, 1025
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 154, 371, 380, 386, 724, 733
HpyF3I CTNAG 5 cut(s) 501, 851, 943, 957, 981
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 7 cut(s) 143, 148, 320, 326, 475, 563, 607
HspAI GCGC 3 cut(s) 69, 251, 718
KasI GGCGCC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 25, 476, 531
Lsp1109I GCAGC 5 cut(s) 117, 349, 352, 367, 714
LweI GCATC 1 cut(s) 336
MaeI CTAG 3 cut(s) 126, 248, 645
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 175, 636
MalI GATC 3 cut(s) 27, 478, 533
MboI GATC 3 cut(s) 25, 476, 531
MboII GAAGA 1 cut(s) 802
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 2 cut(s) 476, 531
MhlI GDGCHC 1 cut(s) 942
MlsI TGGCCA 2 cut(s) 951, 969
MluCI AATT 4 cut(s) 243, 342, 567, 572
MluNI TGGCCA 2 cut(s) 951, 969
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 2 cut(s) 1013, 1054
Mox20I TGGCCA 2 cut(s) 951, 969
MroXI GAANNNNTTC 2 cut(s) 797, 813
MscI TGGCCA 2 cut(s) 951, 969
MseI TTAA 2 cut(s) 197, 417
MslI CAYNNNNRTG 4 cut(s) 60, 315, 321, 945
Msp20I TGGCCA 2 cut(s) 951, 969
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 60, 226, 375
MspR9I CCNGG 3 cut(s) 227, 376, 450
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 7 cut(s) 89, 154, 371, 380, 386, 724, 733
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 2 cut(s) 227, 376
NcoI CCATGG 1 cut(s) 139
NdeII GATC 3 cut(s) 25, 476, 531
NlaIII CATG 7 cut(s) 143, 148, 320, 326, 475, 563, 607
NlaIV GGNNCC 4 cut(s) 70, 230, 373, 1000
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 148
OliI CACNNNNGTG 2 cut(s) 60, 945
PaeI GCATGC 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 721
PceI AGGCCT 3 cut(s) 303, 448, 813
PdmI GAANNNNTTC 2 cut(s) 797, 813
PfeI GAWTC 2 cut(s) 457, 822
PkrI GCNGC 7 cut(s) 91, 132, 364, 367, 382, 729, 1032
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 2 cut(s) 1013, 1054
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 2 cut(s) 1013, 1054
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 4 cut(s) 70, 230, 373, 1000
PspPI GGNCC 2 cut(s) 136, 229
PspXI VCTCGAGB 1 cut(s) 721
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 2 cut(s) 476, 531
PvuI CGATCG 1 cut(s) 28
RsaI GTAC 4 cut(s) 224, 275, 767, 924
RsaNI GTAC 4 cut(s) 223, 274, 766, 923
RseI CAYNNNNRTG 4 cut(s) 60, 315, 321, 945
SaqAI TTAA 2 cut(s) 197, 417
SatI GCNGC 7 cut(s) 90, 131, 363, 366, 381, 728, 1031
Sau3AI GATC 3 cut(s) 25, 476, 531
Sau96I GGNCC 2 cut(s) 136, 229
SchI GAGTC 2 cut(s) 1013, 1054
ScrFI CCNGG 3 cut(s) 227, 376, 450
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 131
SfoI GGCGCC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 721
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 4 cut(s) 60, 315, 321, 945
SmlI CTYRAG 2 cut(s) 487, 721
SmoI CTYRAG 2 cut(s) 487, 721
SphI GCATGC 1 cut(s) 148
Sse9I AATT 4 cut(s) 243, 342, 567, 572
SseBI AGGCCT 3 cut(s) 303, 448, 813
SsiI CCGC 5 cut(s) 75, 89, 913, 1030, 1088
SspDI GGCGCC 1 cut(s) 68
SspI AATATT 1 cut(s) 195
SspMI CTAG 3 cut(s) 126, 248, 645
StuI AGGCCT 3 cut(s) 303, 448, 813
StyD4I CCNGG 3 cut(s) 225, 374, 448
StyI CCWWGG 2 cut(s) 108, 139
TaaI ACNGT 3 cut(s) 283, 628, 785
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 722
TasI AATT 4 cut(s) 243, 342, 567, 572
TatI WGTACW 2 cut(s) 273, 922
TauI GCSGC 2 cut(s) 92, 1033
TfiI GAWTC 2 cut(s) 457, 822
Tru1I TTAA 2 cut(s) 197, 417
Tru9I TTAA 2 cut(s) 197, 417
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 5 cut(s) 130, 362, 365, 380, 727
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 5 cut(s) 311, 592, 600, 654, 803
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 797, 813
XspI CTAG 3 cut(s) 126, 248, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.