Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

2528840 .. 2532187

Gene Structure 3348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGTGTTGTGGCCGAACATTCCGATCGCCAATCTATCAGAGATGTCATCTGCCACGCCGGTGCTGGCGCCTCCGCTGGGGCTATGGCGGCTACATTTGTATGCCCCTTAGATGTCATCAAGACTAGGCTGCAGGTCCATGGCATGCCTTCTGGTCAAAGAGGTAGTATCATTGTCACGAGCCTACAAAAAATATTAAAGACAGAAGGTGTGAAGGGGATGTACCGGGGCCTTTCACCTACAATTCTAGCGCTACTTCCAAACTGGGCAGTGTACTTCACAGTTTATGAGCAACTCAAAGGCCTACTCCACTCTCATGTTCATGGCAGCGGAGAACTCACAATTGGTGAAAATATGATTGCTGCTGCTGGTGCCGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACACAAGGAATGAGGCCTGGTGTGATTCCTTACAAAAGCATGAGATCTGCTTTCTCAAGGATTACAACTGAGGAAGGCTTGCGAGGTTTATATAGTGGGATCTTGCCTTCTTTGGCTGGAGTAAGTCATGTTGCAATTCAATTTCCTGCTTATGAAAAGATAAAGTCTTTCATGGCAAAAAGGGATAATACAACTGTTGATAAGTTACACCCTAGTAGAGTTGCCTTTGCCTCATCGGTATCAAAAGTAATCGCTTCTGTAATAACATACCCTCACGAGGTTGTGCGCTCGAGGCTGCAAGAGCAAGGGCAGGCCAGACACATTGGAACCCAGTATGCAGGAGTAATTGACTGCATAAAGAAGGTGTTCCAAAAGGAAGGCCTTCGTGGATTCTATAATGGTTGTGCTACTAATCTAATAAGAACCACTCCATCTGCCGTTATTACATTTACCAGTTACGAGATGATAGATAGGTTCTTGCGGAGGGTTGTACTTCTAGAAAACGAGCATTCAGAAGGCCACCCTAACTCTGTCGGCCAAGCCGAACCTCACCAGGGAAATGGAGGTACCGAGAGAGCGGGGAATGACTCTGCGCTGCGGCAATCACAAGCCCAAACAAATCAGACTCCAATCCCCCTTGGAACCAAAGAGCCGCTAGCGGCAAGACATGGAAGGACTCCACCTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

375

Amino Acids

40.44

Weight (kDa)

9.76

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	18 - 105	3.7e-26	Mitochondrial carrier protein
Mito_carr	PF00153	113 - 204	8e-23	Mitochondrial carrier protein
Mito_carr	PF00153	213 - 306	6.6e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
Acc65I	GGTACC	1 cut(s)	998
AccB1I	GGYRCC	3 cut(s)	68, 371, 998
AccBSI	CCGCTC	1 cut(s)	1010
AciI	CCGC	8 cut(s)	75, 89, 330, 913, 1010, 1030, 1085, 1091
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	2 cut(s)	12, 967
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	4 cut(s)	224, 275, 924, 1000
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	78, 709, 986
AgsI	TTSAA	3 cut(s)	396, 431, 572
AjnI	CCWGG	2 cut(s)	448, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AleI	CACNNNNGTG	1 cut(s)	60
AlwI	GGATC	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	721
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	8 cut(s)	12, 229, 301, 446, 744, 811, 949, 967
ApeKI	GCWGC	7 cut(s)	130, 327, 362, 365, 380, 727, 1027
Asp700I	GAANNNNTTC	2 cut(s)	797, 813
Asp718I	GGTACC	1 cut(s)	998
AspLEI	GCGC	4 cut(s)	71, 253, 720, 1027
AspS9I	GGNCC	2 cut(s)	136, 229
AsuC2I	CCSGG	2 cut(s)	227, 376
AsuHPI	GGTGA	3 cut(s)	228, 359, 974
AsuNHI	GCTAGC	1 cut(s)	1087
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	3 cut(s)	68, 371, 998
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BauI	CACGAG	2 cut(s)	178, 707
BbvI	GCAGC	7 cut(s)	117, 339, 349, 352, 367, 714, 1014
BccI	CCATC	1 cut(s)	871
BceAI	ACGGC	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	450, 986
BcnI	CCSGG	2 cut(s)	227, 376
BfaI	CTAG	5 cut(s)	126, 248, 645, 929, 1088
BfmI	CTRYAG	1 cut(s)	131
BfoI	RGCGCY	2 cut(s)	72, 254
BfuAI	ACCTGC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	476
Bme1390I	CCNGG	4 cut(s)	227, 376, 450, 986
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	136, 229
BmiI	GGNNCC	6 cut(s)	70, 230, 373, 760, 1000, 1075
BmrFI	CCNGG	4 cut(s)	227, 376, 450, 986
BmrI	ACTGGG	2 cut(s)	274, 757
BmtI	GCTAGC	1 cut(s)	1091
BmuI	ACTGGG	2 cut(s)	274, 757
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	2 cut(s)	227, 376
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	5 cut(s)	139, 226, 375, 985, 1069
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 709, 986
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	269, 763, 885
BseBI	CCWGG	2 cut(s)	450, 986
BseDI	CCNNGG	5 cut(s)	139, 226, 375, 985, 1069
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	78, 709, 986
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	269, 763, 885
BseXI	GCAGC	7 cut(s)	117, 339, 349, 352, 367, 714, 1014
BseYI	CCCAGC	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	8 cut(s)	14, 231, 303, 448, 746, 813, 951, 969
BshNI	GGYRCC	3 cut(s)	68, 371, 998
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	60, 226, 375
BslI	CCNNNNNNNGG	3 cut(s)	78, 709, 986
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	8 cut(s)	14, 231, 303, 448, 746, 813, 951, 969
BsoBI	CYCGRG	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	25, 476, 531
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	8 cut(s)	75, 89, 330, 913, 1010, 1030, 1085, 1091
BspANI	GGCC	8 cut(s)	14, 231, 303, 448, 746, 813, 951, 969
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	6 cut(s)	70, 230, 373, 760, 1000, 1075
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	124
BspOI	GCTAGC	1 cut(s)	1091
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	3 cut(s)	68, 371, 998
BsrBI	CCGCTC	1 cut(s)	1010
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	269, 763, 885
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	5 cut(s)	139, 226, 375, 985, 1069
BssMI	GATC	3 cut(s)	25, 476, 531
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	2 cut(s)	178, 707
BssT1I	CCWWGG	2 cut(s)	139, 1069
Bst2BI	CACGAG	2 cut(s)	178, 707
Bst2UI	CCWGG	2 cut(s)	450, 986
Bst4CI	ACNGT	2 cut(s)	283, 628
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	5 cut(s)	67, 146, 512, 744, 1089
BstDEI	CTNAG	2 cut(s)	109, 501
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	225
BstH2I	RGCGCY	2 cut(s)	72, 254
BstHHI	GCGC	4 cut(s)	71, 253, 720, 1027
BstKTI	GATC	3 cut(s)	28, 479, 534
BstMBI	GATC	3 cut(s)	25, 476, 531
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 371, 380, 386, 724, 733
BstNI	CCWGG	2 cut(s)	450, 986
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	4 cut(s)	225, 374, 448, 984
BstSFI	CTRYAG	1 cut(s)	131
BstV1I	GCAGC	7 cut(s)	117, 339, 349, 352, 367, 714, 1014
BstX2I	RGATCY	2 cut(s)	476, 531
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	2 cut(s)	476, 531
BsuRI	GGCC	8 cut(s)	14, 231, 303, 448, 746, 813, 951, 969
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	5 cut(s)	67, 146, 512, 744, 1089
CfoI	GCGC	4 cut(s)	71, 253, 720, 1027
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	136, 229
Csp6I	GTAC	4 cut(s)	223, 274, 923, 999
CviAII	CATG	8 cut(s)	140, 145, 317, 323, 472, 560, 604, 1100
CviQI	GTAC	4 cut(s)	223, 274, 923, 999
DdeI	CTNAG	2 cut(s)	109, 501
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	3 cut(s)	27, 478, 533
DpnII	GATC	3 cut(s)	25, 476, 531
EaeI	YGGCCR	2 cut(s)	12, 967
Eco130I	CCWWGG	2 cut(s)	139, 1069
Eco147I	AGGCCT	3 cut(s)	303, 448, 813
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	721
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	448, 984
EcoT14I	CCWWGG	2 cut(s)	139, 1069
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	139, 1069
FaeI	CATG	8 cut(s)	143, 148, 320, 326, 475, 563, 607, 1103
FatI	CATG	8 cut(s)	139, 144, 316, 322, 471, 559, 603, 1099
FauI	CCCGC	1 cut(s)	1003
FokI	GGATG	1 cut(s)	232
FspBI	CTAG	5 cut(s)	126, 248, 645, 929, 1088
GlaI	GCGC	4 cut(s)	70, 252, 719, 1026
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	2 cut(s)	72, 254
HaeIII	GGCC	8 cut(s)	14, 231, 303, 448, 746, 813, 951, 969
HapII	CCGG	3 cut(s)	60, 226, 375
HhaI	GCGC	4 cut(s)	71, 253, 720, 1027
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	8 cut(s)	143, 148, 320, 326, 475, 563, 607, 1103
Hin6I	GCGC	4 cut(s)	69, 251, 718, 1025
HinP1I	GCGC	4 cut(s)	69, 251, 718, 1025
HinfI	GANTC	5 cut(s)	457, 822, 1019, 1057, 1108
HpaII	CCGG	3 cut(s)	60, 226, 375
HphI	GGTGA	3 cut(s)	228, 359, 974
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	25, 41, 946, 1056
Hpy188III	TCNNGA	4 cut(s)	121, 178, 707, 929
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	283, 628
HpyCH4V	TGCA	5 cut(s)	133, 566, 730, 770, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 371, 380, 386, 724, 733
HpyF3I	CTNAG	2 cut(s)	109, 501
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	8 cut(s)	143, 148, 320, 326, 475, 563, 607, 1103
HspAI	GCGC	4 cut(s)	69, 251, 718, 1025
KasI	GGCGCC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	1002
Kzo9I	GATC	3 cut(s)	25, 476, 531
Lsp1109I	GCAGC	7 cut(s)	117, 339, 349, 352, 367, 714, 1014
MaeI	CTAG	5 cut(s)	126, 248, 645, 929, 1088
MaeIII	GTNAC	3 cut(s)	175, 636, 887
MalI	GATC	3 cut(s)	27, 478, 533
MbiI	CCGCTC	1 cut(s)	1010
MboI	GATC	3 cut(s)	25, 476, 531
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	476, 531
MluCI	AATT	5 cut(s)	243, 342, 567, 572, 777
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	1013, 1051, 1102
MroXI	GAANNNNTTC	2 cut(s)	797, 813
MseI	TTAA	2 cut(s)	197, 417
MslI	CAYNNNNRTG	4 cut(s)	60, 100, 315, 321
MspA1I	CMGCKG	2 cut(s)	77, 330
MspI	CCGG	3 cut(s)	60, 226, 375
MspR9I	CCNGG	4 cut(s)	227, 376, 450, 986
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	2 cut(s)	450, 986
MwoI	GCNNNNNNNGC	6 cut(s)	89, 371, 380, 386, 724, 733
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	227, 376
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	25, 476, 531
NheI	GCTAGC	1 cut(s)	1087
NlaIII	CATG	8 cut(s)	143, 148, 320, 326, 475, 563, 607, 1103
NlaIV	GGNNCC	6 cut(s)	70, 230, 373, 760, 1000, 1075
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	721
PceI	AGGCCT	3 cut(s)	303, 448, 813
PcsI	WCGNNNNNNNCGW	1 cut(s)	972
PctI	GAATGC	1 cut(s)	940
PdmI	GAANNNNTTC	2 cut(s)	797, 813
PfeI	GAWTC	2 cut(s)	457, 822
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	3 cut(s)	1013, 1051, 1102
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	3 cut(s)	1013, 1051, 1102
Psp6I	CCWGG	2 cut(s)	448, 984
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	448, 984
PspN4I	GGNNCC	6 cut(s)	70, 230, 373, 760, 1000, 1075
PspPI	GGNCC	2 cut(s)	136, 229
PspXI	VCTCGAGB	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	476, 531
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	4 cut(s)	224, 275, 924, 1000
RsaNI	GTAC	4 cut(s)	223, 274, 923, 999
RseI	CAYNNNNRTG	4 cut(s)	60, 100, 315, 321
SaqAI	TTAA	2 cut(s)	197, 417
Sau3AI	GATC	3 cut(s)	25, 476, 531
Sau96I	GGNCC	2 cut(s)	136, 229
SchI	GAGTC	3 cut(s)	1013, 1051, 1102
ScrFI	CCNGG	4 cut(s)	227, 376, 450, 986
SfcI	CTRYAG	1 cut(s)	131
SfoI	GGCGCC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	721
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	721
SmiMI	CAYNNNNRTG	4 cut(s)	60, 100, 315, 321
SmlI	CTYRAG	2 cut(s)	487, 721
SmoI	CTYRAG	2 cut(s)	487, 721
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	5 cut(s)	243, 342, 567, 572, 777
SseBI	AGGCCT	3 cut(s)	303, 448, 813
SsiI	CCGC	8 cut(s)	75, 89, 330, 913, 1010, 1030, 1085, 1091
SspDI	GGCGCC	1 cut(s)	68
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	5 cut(s)	126, 248, 645, 929, 1088
StuI	AGGCCT	3 cut(s)	303, 448, 813
StyD4I	CCNGG	4 cut(s)	225, 374, 448, 984
StyI	CCWWGG	2 cut(s)	139, 1069
TaaI	ACNGT	2 cut(s)	283, 628
TaqI	TCGA	1 cut(s)	722
TasI	AATT	5 cut(s)	243, 342, 567, 572, 777
TatI	WGTACW	2 cut(s)	273, 922
TauI	GCSGC	4 cut(s)	92, 1033, 1087, 1094
TfiI	GAWTC	2 cut(s)	457, 822
Tru1I	TTAA	2 cut(s)	197, 417
Tru9I	TTAA	2 cut(s)	197, 417
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	7 cut(s)	130, 327, 362, 365, 380, 727, 1027
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	311, 592, 600
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	928
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	721
XmnI	GAANNNNTTC	2 cut(s)	797, 813
XspI	CTAG	5 cut(s)	126, 248, 645, 929, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.