Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

56631528 .. 56635616

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGCGTCGAGGCGGCCCACCATTCCGACCACCAGGCTGGCAGAGATGTCATCTGCCACGCCGTTGCCGGCGCCTCTGCTGGTTCCATGGCGGCTACGTTCGTCTGCCCTTTGGATGTCATCAAGACCAGGTTACAGGTCCACGGCATGCCTACTGGTCAAAGAGGCAGTATCATTGTCACGAGCCTACAGAACATATTGAAGACGGAGGGTATTAGGGGGATGTATCGTGGCCTTTCGCCAACAATTCTTGCGCTACTTCCGAATTGGGCAGTGTATTTCACAGTTTATGAACAATTCAAACGTCTACTCCAGATACATGAGGATGGTGGGGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCTGGGGCTGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTGAAGACAAGACTGCAAACACAAGGAATGAGGCCTGGTGTGGTTCCATACAAAAGCATGAGATCTGCTTTCACAAGGATAGCAACTGAGGAAGGGATGCGAGGTTTATATAGTGGGATCATACCTTCTTTGGCTGGTATAAGTCATGTTGCAATTCAGTTTCCTGCTTATGAAAAGATAAAATCATTCATGGCAAAAGAAGATAACACAACTGTTGATAAGTTAAAGCCTGGGAGAGTTGCTGTTGCCTCATCAATATCAAAAATATTGGCTTCTGTAATAACTTACCCTCACGAGGTCATACGTTCCAGGCTTCAAGAGCAAGGGCAGGCTAGACATATTCCACCGAAGTATGCAGGGGTTATTGATTGTATTAAGAAGGTGTTCCGTAAGGAAGGGCTTCCTGGTTTCTATAACGGGTGTGCTACAAATTTAATAAGAACAACACCTTCTGCTGTTATTACATTTACCAGTTACGAGATGATAGATAGGTTCTTGCGAAGGGTTGTACTTGCGGAAAAGGAGCACTCGCAAGACCCCCAAAATCTGATGGCCACGACAAACCTCAGCAGGGGGATAGAGGCAATGTGGGAGATGATAATAACACTTCTTTGCGGCAACTACAAAGCCAATCAAGTAAGGGGGGTACAATTCCTGTTGGAAACAAAGAGCAGGTACAATTCCTGTTGGAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.7

Weight (kDa)

9.56

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	18 - 106	1.6e-26	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 204	1.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	213 - 306	8.4e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1077
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	4 cut(s)	14, 92, 929, 1029
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	844
AcyI	GRCGYC	2 cut(s)	6, 72
AfaI	GTAC	3 cut(s)	924, 1062, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	709, 985
AgsI	TTSAA	4 cut(s)	202, 301, 396, 731
AjnI	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	942
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	4 cut(s)	15, 232, 446, 966
ApeKI	GCWGC	3 cut(s)	362, 365, 380
ApoI	RAATTY	1 cut(s)	844
Asp700I	GAANNNNTTC	2 cut(s)	797, 813
AspLEI	GCGC	2 cut(s)	74, 256
AspS9I	GGNCC	2 cut(s)	16, 139
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	968
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	2 cut(s)	181, 707
BbsI	GAAGAC	2 cut(s)	209, 425
Bbv12I	GWGCWC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	980
BbvI	GCAGC	3 cut(s)	349, 352, 367
BccI	CCATC	2 cut(s)	320, 958
BceAI	ACGGC	2 cut(s)	47, 160
BciT130I	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	1077
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	6 cut(s)	15, 93, 363, 366, 381, 1030
BlsI	GCNGC	6 cut(s)	16, 94, 364, 367, 382, 1031
Bme1390I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	16, 139
BmiI	GGNNCC	3 cut(s)	73, 85, 459
BmrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	209, 425
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	980
BsaHI	GRCGYC	2 cut(s)	6, 72
BsaJI	CCNNGG	3 cut(s)	87, 142, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 985
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	160, 885
Bse3DI	GCAATG	1 cut(s)	1005
BseBI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BseDI	CCNNGG	3 cut(s)	87, 142, 644
BseGI	GGATG	4 cut(s)	121, 228, 331, 516
BseLI	CCNNNNNNNGG	2 cut(s)	709, 985
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	2 cut(s)	492, 994
BseNI	ACTGG	2 cut(s)	160, 885
BseXI	GCAGC	3 cut(s)	349, 352, 367
BseYI	CCCAGC	2 cut(s)	368, 374
BshFI	GGCC	4 cut(s)	17, 234, 448, 968
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	709, 985
BsnI	GGCC	4 cut(s)	17, 234, 448, 968
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	2 cut(s)	476, 531
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	14, 92, 929, 1029
BspANI	GGCC	4 cut(s)	17, 234, 448, 968
BspCNI	CTCAG	2 cut(s)	493, 993
BspLI	GGNNCC	3 cut(s)	73, 85, 459
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	1005
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	160, 885
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	87, 142, 644
BssMI	GATC	2 cut(s)	476, 531
BssNI	GRCGYC	2 cut(s)	6, 72
BssSI	CACGAG	2 cut(s)	181, 707
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	2 cut(s)	181, 707
Bst2UI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
Bst4CI	ACNGT	2 cut(s)	286, 628
BstACI	GRCGYC	2 cut(s)	6, 72
BstC8I	GCNNGC	4 cut(s)	40, 70, 149, 744
BstDEI	CTNAG	2 cut(s)	501, 980
BstDSI	CCRYGG	2 cut(s)	87, 142
BstF5I	GGATG	4 cut(s)	121, 228, 331, 516
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 256
BstKTI	GATC	2 cut(s)	479, 534
BstMBI	GATC	2 cut(s)	476, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
BstNI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	349, 352, 367
BstV2I	GAAGAC	2 cut(s)	209, 425
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	4 cut(s)	17, 234, 448, 968
BtgI	CCRYGG	2 cut(s)	87, 142
BtsCI	GGATG	4 cut(s)	121, 228, 331, 516
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	4 cut(s)	40, 70, 149, 744
CfoI	GCGC	2 cut(s)	74, 256
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	16, 139
CsiI	ACCWGGT	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	923, 1061, 1090
CviAII	CATG	6 cut(s)	88, 148, 320, 472, 560, 604
CviQI	GTAC	3 cut(s)	923, 1061, 1090
DdeI	CTNAG	2 cut(s)	501, 980
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	478, 533
DpnII	GATC	2 cut(s)	476, 531
EaeI	YGGCCR	1 cut(s)	966
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
EcoT14I	CCWWGG	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
FatI	CATG	6 cut(s)	87, 147, 319, 471, 559, 603
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	6 cut(s)	15, 93, 363, 366, 381, 1030
FokI	GGATG	4 cut(s)	128, 235, 338, 523
Fsp4HI	GCNGC	6 cut(s)	15, 93, 363, 366, 381, 1030
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	2 cut(s)	73, 255
GluI	GCNGC	6 cut(s)	15, 93, 363, 366, 381, 1030
GsaI	CCCAGC	2 cut(s)	372, 378
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	17, 234, 448, 968
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	74, 256
Hin1I	GRCGYC	2 cut(s)	6, 72
Hin1II	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
Hin6I	GCGC	2 cut(s)	72, 254
HinP1I	GCGC	2 cut(s)	72, 254
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	142, 308
Hpy188I	TCNGA	3 cut(s)	28, 264, 963
Hpy188III	TCNNGA	5 cut(s)	124, 181, 313, 707, 731
Hpy8I	GTNNAC	2 cut(s)	142, 308
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	500, 549, 787, 803, 873, 909
HpyCH4III	ACNGT	2 cut(s)	286, 628
HpyCH4IV	ACGT	3 cut(s)	98, 304, 718
HpyCH4V	TGCA	3 cut(s)	430, 566, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
HpyF3I	CTNAG	2 cut(s)	501, 980
HpySE526I	ACGT	3 cut(s)	98, 304, 718
Hsp92I	GRCGYC	2 cut(s)	6, 72
Hsp92II	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
HspAI	GCGC	2 cut(s)	72, 254
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	476, 531
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	3 cut(s)	349, 352, 367
LweI	GCATC	1 cut(s)	501
MabI	ACCWGGT	1 cut(s)	128
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	3 cut(s)	98, 304, 718
MaeIII	GTNAC	3 cut(s)	132, 178, 887
MalI	GATC	2 cut(s)	478, 533
MboI	GATC	2 cut(s)	476, 531
MboII	GAAGA	3 cut(s)	214, 430, 626
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	942
MlsI	TGGCCA	1 cut(s)	968
MluCI	AATT	8 cut(s)	246, 265, 296, 342, 567, 844, 1064, 1093
MluNI	TGGCCA	1 cut(s)	968
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	3 cut(s)	51, 1053, 1082
Mox20I	TGGCCA	1 cut(s)	968
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	2 cut(s)	797, 813
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	3 cut(s)	638, 789, 848
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	968
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
MwoI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	476, 531
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
NlaIV	GGNNCC	3 cut(s)	73, 85, 459
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	797, 813
PkrI	GCNGC	6 cut(s)	16, 94, 364, 367, 382, 1031
PluTI	GGCGCC	1 cut(s)	75
Psp6I	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
PspFI	CCCAGC	2 cut(s)	368, 374
PspGI	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
PspN4I	GGNNCC	3 cut(s)	73, 85, 459
PspPI	GGNCC	2 cut(s)	16, 139
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	3 cut(s)	924, 1062, 1091
RsaNI	GTAC	3 cut(s)	923, 1061, 1090
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	638, 789, 848
SatI	GCNGC	6 cut(s)	15, 93, 363, 366, 381, 1030
Sau3AI	GATC	2 cut(s)	476, 531
Sau96I	GGNCC	2 cut(s)	16, 139
ScrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
SduI	GDGCHC	1 cut(s)	942
SexAI	ACCWGGT	1 cut(s)	128
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	188
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	324
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	8 cut(s)	246, 265, 296, 342, 567, 844, 1064, 1093
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	4 cut(s)	14, 92, 929, 1029
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	286, 628
TaiI	ACGT	3 cut(s)	101, 307, 721
TaqI	TCGA	1 cut(s)	9
TasI	AATT	8 cut(s)	246, 265, 296, 342, 567, 844, 1064, 1093
TatI	WGTACW	1 cut(s)	922
TauI	GCSGC	3 cut(s)	17, 95, 1032
Tru1I	TTAA	3 cut(s)	638, 789, 848
Tru9I	TTAA	3 cut(s)	638, 789, 848
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	362, 365, 380
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	306, 592, 600
TspGWI	ACGGA	2 cut(s)	221, 791
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	844
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	797, 813
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.