Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

55544572 .. 55548063

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGCGTCGAGGCGGCCCACCATTCCGACCACCAGGCTGGCAGAGATGTCATCTGCCACGCCGTTGCCGGCGCCTCTGCTGGTTCCATGGCGGCTACGTTCGTCTGCCCTCTGGATGTCATCAAGACCAGGTTACAGGTCCACGGCATGCCTACCGGTCAAAGAGGCAGTATCATTGTCACGAGCCTACAGAACATATTGAAGACGGAGGGTATTAGGGGGATGTATCGTGGCCTCTCGCCAACAATTCTTGCGCTACTTCCGAATTGGGCAGTGTATTTCACAGTTTATGAACAACTCAAACGTCTACTCCAGATACATGAGGATGGTGGGGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCTGGGGCTGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTGAAGACAAGACTGCAAACACAAGGAATGAGGCCTGGTGTGGTTCCATACAAAAGCATGAGATCTGCTTTCACAAGGATAGCAACTGAGGAAGGGATGCGAGGTTTATATAGTGGGATCATACCTTCTTTGGCTGGTATAAGTCATGTTGCAATTCAGTTTCCTGCTTATGAAAAGATAAAATCATTCATGGCAAAAGAAGATAACACAACTGTTGATAAGTTAAAGCCTGGGAGAGTTGCCATTGCCTCATCAATATCAAAAATATTCGCTTCTGTAATAACTTATCCTCACGAGGTCATACGTTCCAGGCTTCAAGAGCAAGGGCAGGCTAGACATATTCCACCGAAGTATGCAGGGGTTATTGATTGTATTAAGAAGGTGTTCCTTAAGGAAGGCCTTCCTGGTTTCTATAACGGGTGTGCTACAAATTTAATAAGAACAACACCTTCTGCTGTTATTACGTTTACCAGTTACGAGATGATAGATAGGTTCTTGCGAAGGGTTGTACTTGCGGAAAAGGAGCACTCGCAAGACCCCCCAAAATCTGATGGCCACGGCAAACCTCAGCAGGGGGATAGAGGCAATGTGGGAGATGATAATAACACTTCTTTGCGGCAACTACAAAGCCAATCAAGTAAGGGGGGTACAATTCCTGTTGGAAACAAAGAGCAGCTAACAGCAAGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

368

Amino Acids

39.84

Weight (kDa)

9.48

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	18 - 106	2.1e-26	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 204	1.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	213 - 306	4.8e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	4 cut(s)	14, 92, 929, 1030
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	1 cut(s)	844
AcyI	GRCGYC	2 cut(s)	6, 72
AfaI	GTAC	2 cut(s)	924, 1063
AfiI	CCNNNNNNNGG	1 cut(s)	986
AflII	CTTAAG	1 cut(s)	803
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	202, 396, 731
AjnI	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	2 cut(s)	362, 1090
AluI	AGCT	2 cut(s)	362, 1090
Alw21I	GWGCWC	1 cut(s)	942
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	5 cut(s)	15, 232, 446, 811, 967
ApeKI	GCWGC	4 cut(s)	362, 365, 380, 1087
ApoI	RAATTY	1 cut(s)	844
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	2 cut(s)	797, 813
AspLEI	GCGC	2 cut(s)	74, 256
AspS9I	GGNCC	2 cut(s)	16, 139
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	969
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	2 cut(s)	181, 707
BbsI	GAAGAC	2 cut(s)	209, 425
Bbv12I	GWGCWC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	981
BbvI	GCAGC	4 cut(s)	349, 352, 367, 1099
BccI	CCATC	2 cut(s)	320, 959
BceAI	ACGGC	3 cut(s)	47, 160, 988
BciT130I	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	803
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	7 cut(s)	15, 93, 363, 366, 381, 1031, 1088
BlsI	GCNGC	7 cut(s)	16, 94, 364, 367, 382, 1032, 1089
Bme1390I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	16, 139
BmiI	GGNNCC	3 cut(s)	73, 85, 459
BmrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	209, 425
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	981
BsaHI	GRCGYC	2 cut(s)	6, 72
BsaJI	CCNNGG	4 cut(s)	87, 142, 644, 970
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse118I	RCCGGY	2 cut(s)	68, 155
Bse1I	ACTGG	1 cut(s)	885
Bse3DI	GCAATG	2 cut(s)	657, 1006
BseBI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BseDI	CCNNGG	4 cut(s)	87, 142, 644, 970
BseGI	GGATG	4 cut(s)	121, 228, 331, 516
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMI	GCAATG	2 cut(s)	657, 1006
BseMII	CTCAG	2 cut(s)	492, 995
BseNI	ACTGG	1 cut(s)	885
BseXI	GCAGC	4 cut(s)	349, 352, 367, 1099
BseYI	CCCAGC	2 cut(s)	368, 374
BshFI	GGCC	5 cut(s)	17, 234, 448, 813, 969
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	2 cut(s)	69, 156
BslI	CCNNNNNNNGG	1 cut(s)	986
BsnI	GGCC	5 cut(s)	17, 234, 448, 813, 969
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	2 cut(s)	476, 531
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	14, 92, 929, 1030
BspANI	GGCC	5 cut(s)	17, 234, 448, 813, 969
BspCNI	CTCAG	2 cut(s)	493, 994
BspLI	GGNNCC	3 cut(s)	73, 85, 459
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	657, 1006
BsrFI	RCCGGY	2 cut(s)	68, 155
BsrI	ACTGG	1 cut(s)	885
BssAI	RCCGGY	2 cut(s)	68, 155
BssECI	CCNNGG	4 cut(s)	87, 142, 644, 970
BssMI	GATC	2 cut(s)	476, 531
BssNI	GRCGYC	2 cut(s)	6, 72
BssSI	CACGAG	2 cut(s)	181, 707
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	2 cut(s)	181, 707
Bst2UI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
Bst4CI	ACNGT	2 cut(s)	286, 628
BstACI	GRCGYC	2 cut(s)	6, 72
BstAFI	CTTAAG	1 cut(s)	803
BstC8I	GCNNGC	5 cut(s)	40, 70, 149, 744, 1099
BstDEI	CTNAG	2 cut(s)	501, 981
BstDSI	CCRYGG	3 cut(s)	87, 142, 970
BstF5I	GGATG	4 cut(s)	121, 228, 331, 516
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 256
BstKTI	GATC	2 cut(s)	479, 534
BstMBI	GATC	2 cut(s)	476, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
BstNI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	349, 352, 367, 1099
BstV2I	GAAGAC	2 cut(s)	209, 425
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	5 cut(s)	17, 234, 448, 813, 969
BtgI	CCRYGG	3 cut(s)	87, 142, 970
BtsCI	GGATG	4 cut(s)	121, 228, 331, 516
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 1102
Cac8I	GCNNGC	5 cut(s)	40, 70, 149, 744, 1099
CfoI	GCGC	2 cut(s)	74, 256
Cfr10I	RCCGGY	2 cut(s)	68, 155
Cfr13I	GGNCC	2 cut(s)	16, 139
CsiI	ACCWGGT	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	923, 1062
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	6 cut(s)	88, 148, 320, 472, 560, 604
CviQI	GTAC	2 cut(s)	923, 1062
DdeI	CTNAG	2 cut(s)	501, 981
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	478, 533
DpnII	GATC	2 cut(s)	476, 531
EaeI	YGGCCR	1 cut(s)	967
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	2 cut(s)	448, 813
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
EcoT14I	CCWWGG	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
FatI	CATG	6 cut(s)	87, 147, 319, 471, 559, 603
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	7 cut(s)	15, 93, 363, 366, 381, 1031, 1088
FokI	GGATG	4 cut(s)	128, 235, 338, 523
Fsp4HI	GCNGC	7 cut(s)	15, 93, 363, 366, 381, 1031, 1088
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	2 cut(s)	73, 255
GluI	GCNGC	7 cut(s)	15, 93, 363, 366, 381, 1031, 1088
GsaI	CCCAGC	2 cut(s)	372, 378
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	17, 234, 448, 813, 969
HapII	CCGG	2 cut(s)	69, 156
HhaI	GCGC	2 cut(s)	74, 256
Hin1I	GRCGYC	2 cut(s)	6, 72
Hin1II	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
Hin6I	GCGC	2 cut(s)	72, 254
HinP1I	GCGC	2 cut(s)	72, 254
HpaII	CCGG	2 cut(s)	69, 156
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	3 cut(s)	142, 308, 882
Hpy188I	TCNGA	3 cut(s)	28, 264, 964
Hpy188III	TCNNGA	6 cut(s)	113, 124, 181, 313, 707, 731
Hpy8I	GTNNAC	3 cut(s)	142, 308, 882
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	7 cut(s)	500, 549, 787, 803, 824, 873, 909
HpyCH4III	ACNGT	2 cut(s)	286, 628
HpyCH4IV	ACGT	4 cut(s)	98, 304, 718, 878
HpyCH4V	TGCA	3 cut(s)	430, 566, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
HpyF3I	CTNAG	2 cut(s)	501, 981
HpySE526I	ACGT	4 cut(s)	98, 304, 718, 878
Hsp92I	GRCGYC	2 cut(s)	6, 72
Hsp92II	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
HspAI	GCGC	2 cut(s)	72, 254
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	476, 531
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	4 cut(s)	349, 352, 367, 1099
LweI	GCATC	1 cut(s)	501
MabI	ACCWGGT	1 cut(s)	128
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	4 cut(s)	98, 304, 718, 878
MaeIII	GTNAC	3 cut(s)	132, 178, 887
MalI	GATC	2 cut(s)	478, 533
MboI	GATC	2 cut(s)	476, 531
MboII	GAAGA	3 cut(s)	214, 430, 626
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	942
MlsI	TGGCCA	1 cut(s)	969
MluCI	AATT	6 cut(s)	246, 265, 342, 567, 844, 1065
MluNI	TGGCCA	1 cut(s)	969
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	51, 1054
Mox20I	TGGCCA	1 cut(s)	969
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	2 cut(s)	797, 813
MscI	TGGCCA	1 cut(s)	969
MseI	TTAA	4 cut(s)	638, 789, 804, 848
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	969
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	2 cut(s)	69, 156
MspR9I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	6 cut(s)	35, 130, 450, 645, 724, 819
MwoI	GCNNNNNNNGC	4 cut(s)	371, 380, 386, 733
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	476, 531
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	6 cut(s)	91, 151, 323, 475, 563, 607
NlaIV	GGNNCC	3 cut(s)	73, 85, 459
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PceI	AGGCCT	2 cut(s)	448, 813
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	797, 813
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	7 cut(s)	16, 94, 364, 367, 382, 1032, 1089
PluTI	GGCGCC	1 cut(s)	75
Psp6I	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
PspFI	CCCAGC	2 cut(s)	368, 374
PspGI	CCWGG	6 cut(s)	33, 128, 448, 643, 722, 817
PspN4I	GGNNCC	3 cut(s)	73, 85, 459
PspPI	GGNCC	2 cut(s)	16, 139
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	924, 1063
RsaNI	GTAC	2 cut(s)	923, 1062
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	638, 789, 804, 848
SatI	GCNGC	7 cut(s)	15, 93, 363, 366, 381, 1031, 1088
Sau3AI	GATC	2 cut(s)	476, 531
Sau96I	GGNCC	2 cut(s)	16, 139
ScrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
SduI	GDGCHC	1 cut(s)	942
SexAI	ACCWGGT	1 cut(s)	128
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	188
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	6 cut(s)	246, 265, 342, 567, 844, 1065
SseBI	AGGCCT	2 cut(s)	448, 813
SsiI	CCGC	4 cut(s)	14, 92, 929, 1030
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	1 cut(s)	747
StuI	AGGCCT	2 cut(s)	448, 813
StyD4I	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	286, 628
TaiI	ACGT	4 cut(s)	101, 307, 721, 881
TaqI	TCGA	1 cut(s)	9
TasI	AATT	6 cut(s)	246, 265, 342, 567, 844, 1065
TatI	WGTACW	1 cut(s)	922
TauI	GCSGC	3 cut(s)	17, 95, 1033
Tru1I	TTAA	4 cut(s)	638, 789, 804, 848
Tru9I	TTAA	4 cut(s)	638, 789, 804, 848
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	362, 365, 380, 1087
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	306, 592, 600
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	844
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	797, 813
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.