Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

2131680 .. 2134077

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03170.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTGTTGTGGCCGAACATTCCGATCGCCAATCTATCAGAGATGTCATCTGCCACGCCGGTGCTGGCGCCTCCGCTGGTGCTATGGCGGCTACGTTTGTATGCCCCTTGGATGTCATCAAGACTAGGCTGCAGGTCCATGGCATGCCTTCTGGTCAGAGAGGTAGTATCATTGTCACGAGCCTACAGAAAATATTAAAGACGGAAGGTGTGAAGGGGATGTACCGGGGCCTTTCGCCTACAATTCTAGCGCTACTTCCAAATTGGGCAGTGTACTTCACAGTTTATGAGCAACTCAAAGGCCTACTCCACTCTCATGTTCATGGCAGCGGAGAACTCACAATCGGTGAAAATATGATTGCTGCTGCTGGTGCCGGGGCAGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACACAAGGAATGAGGCCTGGTGTGATTCCTTACAAAAGCATGATCGATCTGCTTTCTCAAGGATTACAACTGAGGAAGGCTTACGAGATAATACAACAGTTGATAAGTTACACCCTAGTAGGGTTGCCTTTGCCTCATCAGTATCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

195

Amino Acids

20.87

Weight (kDa)

9.58

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	2 cut(s)	68, 371
AciI	CCGC	3 cut(s)	75, 89, 330
AcoI	YGGCCR	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	224, 275
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	396, 431
AjnI	CCWGG	1 cut(s)	448
AleI	CACNNNNGTG	1 cut(s)	60
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	4 cut(s)	12, 229, 301, 446
ApeKI	GCWGC	5 cut(s)	130, 327, 362, 365, 380
AspLEI	GCGC	2 cut(s)	71, 253
AspS9I	GGNCC	2 cut(s)	136, 229
AsuC2I	CCSGG	2 cut(s)	227, 376
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	68, 371
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BauI	CACGAG	1 cut(s)	178
BbvI	GCAGC	5 cut(s)	117, 339, 349, 352, 392
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	227, 376
BfaI	CTAG	3 cut(s)	126, 248, 548
BfmI	CTRYAG	2 cut(s)	131, 185
BfoI	RGCGCY	2 cut(s)	72, 254
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	6 cut(s)	90, 131, 328, 363, 366, 381
BlsI	GCNGC	6 cut(s)	91, 132, 329, 364, 367, 382
Bme1390I	CCNGG	3 cut(s)	227, 376, 450
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 229
BmiI	GGNNCC	3 cut(s)	70, 230, 373
BmrFI	CCNGG	3 cut(s)	227, 376, 450
BpuEI	CTTGAG	1 cut(s)	474
BpuMI	CCSGG	2 cut(s)	227, 376
Bsa29I	ATCGAT	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	108, 139, 226, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse118I	RCCGGY	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	108, 139, 226, 375
BseGI	GGATG	2 cut(s)	118, 225
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	494
BseXI	GCAGC	5 cut(s)	117, 339, 349, 352, 392
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	14, 231, 303, 448
BshNI	GGYRCC	2 cut(s)	68, 371
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	60, 226, 375
BslI	CCNNNNNNNGG	1 cut(s)	552
BsnI	GGCC	4 cut(s)	14, 231, 303, 448
Bsp143I	GATC	3 cut(s)	25, 474, 478
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	3 cut(s)	75, 89, 330
BspANI	GGCC	4 cut(s)	14, 231, 303, 448
BspCNI	CTCAG	1 cut(s)	495
BspDI	ATCGAT	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	70, 230, 373
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	124
BspT107I	GGYRCC	2 cut(s)	68, 371
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	4 cut(s)	108, 139, 226, 375
BssMI	GATC	3 cut(s)	25, 474, 478
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	108, 139
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	283, 531
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	67, 146
BstDEI	CTNAG	1 cut(s)	503
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	118, 225
BstH2I	RGCGCY	2 cut(s)	72, 254
BstHHI	GCGC	2 cut(s)	71, 253
BstKTI	GATC	3 cut(s)	28, 477, 481
BstMBI	GATC	3 cut(s)	25, 474, 478
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 371, 380, 386
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	225, 374, 448
BstSFI	CTRYAG	2 cut(s)	131, 185
BstV1I	GCAGC	5 cut(s)	117, 339, 349, 352, 392
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	14, 231, 303, 448
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	118, 225
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	67, 146
CfoI	GCGC	2 cut(s)	71, 253
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	136, 229
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	223, 274
CviAII	CATG	5 cut(s)	140, 145, 317, 323, 472
CviQI	GTAC	2 cut(s)	223, 274
DdeI	CTNAG	1 cut(s)	503
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	3 cut(s)	27, 476, 480
DpnII	GATC	3 cut(s)	25, 474, 478
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	108, 139
Eco147I	AGGCCT	2 cut(s)	303, 448
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	108, 139
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	108, 139
FaeI	CATG	5 cut(s)	143, 148, 320, 326, 475
FaiI	YATR	9 cut(s)	86, 103, 141, 146, 288, 318, 324, 356, 473
FatI	CATG	5 cut(s)	139, 144, 316, 322, 471
Fnu4HI	GCNGC	6 cut(s)	90, 131, 328, 363, 366, 381
FokI	GGATG	2 cut(s)	125, 232
Fsp4HI	GCNGC	6 cut(s)	90, 131, 328, 363, 366, 381
FspBI	CTAG	3 cut(s)	126, 248, 548
GlaI	GCGC	2 cut(s)	70, 252
GluI	GCNGC	6 cut(s)	90, 131, 328, 363, 366, 381
HaeII	RGCGCY	2 cut(s)	72, 254
HaeIII	GGCC	4 cut(s)	14, 231, 303, 448
HapII	CCGG	3 cut(s)	60, 226, 375
HhaI	GCGC	2 cut(s)	71, 253
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	143, 148, 320, 326, 475
Hin6I	GCGC	2 cut(s)	69, 251
HinP1I	GCGC	2 cut(s)	69, 251
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	3 cut(s)	60, 226, 375
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	25, 41, 159
Hpy188III	TCNNGA	2 cut(s)	121, 178
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	4 cut(s)	159, 200, 208, 502
HpyCH4III	ACNGT	2 cut(s)	283, 531
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 371, 380, 386
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	143, 148, 320, 326, 475
HspAI	GCGC	2 cut(s)	69, 251
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	25, 474, 478
Lsp1109I	GCAGC	5 cut(s)	117, 339, 349, 352, 392
MaeI	CTAG	3 cut(s)	126, 248, 548
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	175, 539
MalI	GATC	3 cut(s)	27, 476, 480
MboI	GATC	3 cut(s)	25, 474, 478
MluCI	AATT	2 cut(s)	243, 262
Mly113I	GGCGCC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	82, 155, 438, 498, 576
MseI	TTAA	2 cut(s)	197, 417
MslI	CAYNNNNRTG	3 cut(s)	60, 315, 321
MspA1I	CMGCKG	2 cut(s)	77, 330
MspI	CCGG	3 cut(s)	60, 226, 375
MspR9I	CCNGG	3 cut(s)	227, 376, 450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	89, 371, 380, 386
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	227, 376
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	25, 474, 478
NlaIII	CATG	5 cut(s)	143, 148, 320, 326, 475
NlaIV	GGNNCC	3 cut(s)	70, 230, 373
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	148
PceI	AGGCCT	2 cut(s)	303, 448
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	6 cut(s)	91, 132, 329, 364, 367, 382
Ple19I	CGATCG	1 cut(s)	28
PluTI	GGCGCC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	70, 230, 373
PspPI	GGNCC	2 cut(s)	136, 229
PstI	CTGCAG	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	224, 275
RsaNI	GTAC	2 cut(s)	223, 274
RseI	CAYNNNNRTG	3 cut(s)	60, 315, 321
SaqAI	TTAA	2 cut(s)	197, 417
SatI	GCNGC	6 cut(s)	90, 131, 328, 363, 366, 381
Sau3AI	GATC	3 cut(s)	25, 474, 478
Sau96I	GGNCC	2 cut(s)	136, 229
ScrFI	CCNGG	3 cut(s)	227, 376, 450
SetI	ASST	4 cut(s)	98, 138, 166, 211
SfcI	CTRYAG	2 cut(s)	131, 185
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	3 cut(s)	60, 315, 321
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	2 cut(s)	243, 262
SseBI	AGGCCT	2 cut(s)	303, 448
SsiI	CCGC	3 cut(s)	75, 89, 330
SspDI	GGCGCC	1 cut(s)	68
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	3 cut(s)	126, 248, 548
StuI	AGGCCT	2 cut(s)	303, 448
StyD4I	CCNGG	3 cut(s)	225, 374, 448
StyI	CCWWGG	2 cut(s)	108, 139
TaaI	ACNGT	2 cut(s)	283, 531
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	477
TasI	AATT	2 cut(s)	243, 262
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	197, 417
Tru9I	TTAA	2 cut(s)	197, 417
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	5 cut(s)	130, 327, 362, 365, 380
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	136
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	3 cut(s)	126, 248, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.