Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

44987763 .. 44988149

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0277300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGCAGTTTAAGAGCACCCATAACCGGCGAAGTGGGTCAGAACTGTTCACTCTCTGCTCCTCATCATCATCATCTTCTTCTTCTTCTCTCCGAACCCTCATCTCTCACTATAATCCCTCAACGAATCAAAATCTCCGATTCAAACCTCCATCAAACTCTAAGCCCATATATGTAGAAAGCTCTAAGCGACATCGTGAGCACACTGGACATGGTGGAACCGAGTCGCTCTACGCTCTGGGACTACATCTCGCCGTTGGTCAACACTTGACTAAACGACGTCGTCGCGGACATGAACGACCTAAGCTGGCAGGAGTGCTGCATCACCACCATCAAAATGCTGAGCTCGTGTCGACTAAACGACGCTGTCTAATGCTTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

128

Amino Acids

14.52

Weight (kDa)

10.72

Isoelectric Point (pI)

78.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	145, 380
AluBI	AGCT	3 cut(s)	183, 307, 346
AluI	AGCT	3 cut(s)	183, 307, 346
Alw21I	GWGCWC	3 cut(s)	20, 204, 348
ApeKI	GCWGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	347
Bbv12I	GWGCWC	3 cut(s)	20, 204, 348
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	160, 339
BceAI	ACGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	288
BsiHKAI	GWGCWC	3 cut(s)	20, 204, 348
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	20, 204, 348
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	162, 186, 303, 342
BstFNI	CGCG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	27
CseI	GACGC	1 cut(s)	372
CviAII	CATG	2 cut(s)	212, 293
CviJI	RGCY	4 cut(s)	166, 183, 307, 346
CviKI_1	RGCY	4 cut(s)	166, 183, 307, 346
DdeI	CTNAG	4 cut(s)	162, 186, 303, 342
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	2 cut(s)	215, 296
FaiI	YATR	7 cut(s)	24, 114, 170, 172, 174, 213, 294
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	211, 292
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	372
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	215, 296
HincII	GTYRAC	2 cut(s)	263, 354
HindII	GTYRAC	2 cut(s)	263, 354
HinfI	GANTC	3 cut(s)	127, 141, 224
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	51, 263, 354
Hpy188I	TCNGA	3 cut(s)	43, 95, 140
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	3 cut(s)	51, 263, 354
Hpy99I	CGWCG	4 cut(s)	282, 285, 288, 366
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	7, 322
HpyF3I	CTNAG	4 cut(s)	162, 186, 303, 342
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	215, 296
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	41, 192, 224, 293, 297
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	1 cut(s)	280
MboII	GAAGA	4 cut(s)	69, 72, 75, 78
MhlI	GDGCHC	3 cut(s)	20, 204, 348
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	73, 110, 130, 159
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	288
NlaIII	CATG	2 cut(s)	215, 296
NlaIV	GGNNCC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	127, 141
PflFI	GACNNNGTC	2 cut(s)	282, 366
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	220
PsyI	GACNNNGTC	2 cut(s)	282, 366
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	3 cut(s)	20, 204, 348
SetI	ASST	6 cut(s)	151, 185, 283, 304, 309, 348
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	336
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	127, 141
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	2 cut(s)	282, 366
XmiI	GTMKAC	1 cut(s)	353
ZraI	GACGTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.