Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445801.1

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

666 .. 1545

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggaacttttatccttgtcgtttcagttgatgaaatgctttttgttgtgtgtggtttggaacagtgggatcataccttctttggctggtataagtcatgttgcaattcagtttcctgcttatgaaaagataaaatcattcatggcaaaagaagataacacaactgttgataaattaaagcctgggagagttgccattgcctcatcaatatcaaaaatattcgcttctgtaataacttatcctcacgaggtcatacgttccaggcttcaagagcaagggcaggctagacatattccaccgaagtatgcaggggttattgattgtattaagaaggtgttccttaaggaaggccttcctggtttctataacgggtgtgctacaaatttaataagaacaacaccttctgctgttattacatttaccagttacgagatgatagataggttcttgcgaagggttgtacttgcggaaaaggagcactcgcaagaccccccaaaatctgatggccacggcaaacctcagcagggggatagaggcaatgtgggagatgataataacacttctttgcggcaactacaaagccaatcaagtaaggggggtacaattcctgttggaaacaaagagcagctaacagcaagccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

214

Amino Acids

23.59

Weight (kDa)

9.28

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	467, 568
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	2 cut(s)	462, 601
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	181, 260, 355
AluBI	AGCT	1 cut(s)	628
AluI	AGCT	1 cut(s)	628
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	349, 505
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	382
Asp700I	GAANNNNTTC	2 cut(s)	335, 351
BalI	TGGCCA	1 cut(s)	507
BauI	CACGAG	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	3 cut(s)	183, 262, 357
BfaI	CTAG	1 cut(s)	285
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	569, 626
BlsI	GCNGC	2 cut(s)	570, 627
Bme1390I	CCNGG	3 cut(s)	183, 262, 357
BmrFI	CCNGG	3 cut(s)	183, 262, 357
Bpu10I	CCTNAGC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	182, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	2 cut(s)	195, 544
BseBI	CCWGG	3 cut(s)	183, 262, 357
BseDI	CCNNGG	2 cut(s)	182, 508
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMI	GCAATG	2 cut(s)	195, 544
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	637
BshFI	GGCC	2 cut(s)	351, 507
BsiHKAI	GWGCWC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	524
BsnI	GGCC	2 cut(s)	351, 507
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	467, 568
BspANI	GGCC	2 cut(s)	351, 507
BspCNI	CTCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	195, 544
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	182, 508
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	3 cut(s)	183, 262, 357
Bst4CI	ACNGT	2 cut(s)	65, 166
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	282, 637
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	508
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	3 cut(s)	183, 262, 357
BstSCI	CCNGG	3 cut(s)	181, 260, 355
BstV1I	GCAGC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	351, 507
BtgI	CCRYGG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	70, 640
Cac8I	GCNNGC	2 cut(s)	282, 637
Csp6I	GTAC	2 cut(s)	461, 600
CviAII	CATG	2 cut(s)	98, 142
CviJI	RGCY	9 cut(s)	86, 181, 265, 284, 351, 507, 582, 628, 639
CviKI_1	RGCY	9 cut(s)	86, 181, 265, 284, 351, 507, 582, 628, 639
CviQI	GTAC	2 cut(s)	461, 600
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	351
EcoRII	CCWGG	3 cut(s)	181, 260, 355
FaeI	CATG	2 cut(s)	101, 145
FaiI	YATR	9 cut(s)	74, 92, 99, 123, 143, 254, 291, 306, 366
FatI	CATG	2 cut(s)	97, 141
Fnu4HI	GCNGC	2 cut(s)	569, 626
Fsp4HI	GCNGC	2 cut(s)	569, 626
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	569, 626
HaeIII	GGCC	2 cut(s)	351, 507
Hin1II	CATG	2 cut(s)	101, 145
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	245, 269
HpyAV	CCTTC	6 cut(s)	87, 325, 341, 362, 411, 447
HpyCH4III	ACNGT	2 cut(s)	65, 166
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	104, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	101, 145
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	105, 173, 382, 603
MluNI	TGGCCA	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	5 cut(s)	211, 241, 252, 527, 528
Mox20I	TGGCCA	1 cut(s)	507
MroXI	GAANNNNTTC	2 cut(s)	335, 351
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	4 cut(s)	176, 327, 342, 386
Msp20I	TGGCCA	1 cut(s)	507
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	3 cut(s)	183, 262, 357
MvaI	CCWGG	3 cut(s)	183, 262, 357
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	101, 145
PceI	AGGCCT	1 cut(s)	351
PdmI	GAANNNNTTC	2 cut(s)	335, 351
PkrI	GCNGC	2 cut(s)	570, 627
Psp6I	CCWGG	3 cut(s)	181, 260, 355
PspGI	CCWGG	3 cut(s)	181, 260, 355
RsaI	GTAC	2 cut(s)	462, 601
RsaNI	GTAC	2 cut(s)	461, 600
SaqAI	TTAA	4 cut(s)	176, 327, 342, 386
SatI	GCNGC	2 cut(s)	569, 626
Sau3AI	GATC	1 cut(s)	69
ScrFI	CCNGG	3 cut(s)	183, 262, 357
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	8 cut(s)	79, 252, 259, 336, 403, 446, 520, 630
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	105, 173, 382, 603
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	2 cut(s)	467, 568
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	181, 260, 355
TaaI	ACNGT	2 cut(s)	65, 166
TaiI	ACGT	1 cut(s)	259
TasI	AATT	4 cut(s)	105, 173, 382, 603
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	1 cut(s)	571
Tru1I	TTAA	4 cut(s)	176, 327, 342, 386
Tru9I	TTAA	4 cut(s)	176, 327, 342, 386
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	625
TspDTI	ATGAA	3 cut(s)	47, 130, 138
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	382
XmnI	GAANNNNTTC	2 cut(s)	335, 351
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.