Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006542

Physical Location & Seq

Genomic Coordinates Reverse (-)

28069504 .. 28073722

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGCGGCGAGACGGCCCACCATTCCGACCACCAGGCCGCCAGAGATATCTTCTGCCACGCCGTCGCCGGCGCCTCCGCCGGTTCTATGGCGGCTGCGTTCGTCTGCCCTTTGGATGTTATCAAGACCAGGTTACAGGTCCATGGCATGCCTACCGGTCAAAGAGGCAGTATCATTGTCACGAGCCTGCAGAACATATTGAAGACGGAGGGTATTAGGGGGATGTATCGTGGCCTTTCGCCTACAATTCTTGCGCTACTTCCGAACTGGGCGGTGTATTTCACAGTTTATGAACAACTCAAAGGTCTACTGCAGTCACATGAGGATGGCAGTGAACGCTCAATTGGTGAAAATATGATAGCTGCTGCTGGTGCTGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAACACAAGGAATGAGGCCTGGTGTGATTCCATACAAAAGCATGAGATCTGCTTTCACAAGGATAGCAACTGAGGAAGGGTTGCGGGGTTTATATAGTGGGATTATACCTTCTTTGGCTGGGATAAGTCATGTTGCAATTCAGTTTCCTGCTTATGAAAAGATAAAATCAATCATGGCAAAAGAGGATAGCACAACTGTTGATAAGTTAAAGCCGGGGAGAGTTGCTGTTGCCTCATCAATATCAAAAATACTGGCCTCTGTAATAACTTACCCTCATGAGGTCATACGTTCCAGGCTTCAAGAGCAAGGGCAGGCTAGACATATTCAACCCAAGTATGCGGGTGTTATTGATTGTATTAAGAAGGTGTTCCTAAAGGAAGGCCTTCCTGGTTTCTATAACGGTTGCGCTACAAATTTAATAAGAACAACACCTTCTGCTGTTATTACATTTACCAGTTACGAGATGATAGATAGGTTCTTGCGAAGAGTGGTGCTTTCAGAAAAGGAGCACTCACGAGATCCCCCGAAATCAGATGGCAATGACAAACCGCAGCAAGGAGATAGAGGCAGTGTGGGAGATGATAATAACCCTTCTTTGCGGCAACTACAAACCCAATCAAATAAGGGGGGAACAATTCCAGTTGGAAACAAAGAGCAGCTAACAGCAAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006862 GO:0008150 GO:0015215 GO:0015605 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0035352 GO:0043132 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051182 GO:0051184 GO:0051185 GO:0051234 GO:0051724 GO:0055085 GO:0071702 GO:0071705 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

369

Amino Acids

39.89

Weight (kDa)

9.55

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	2 - 78	2.6e-21	Mitochondrial carrier protein
Mito_carr	PF00153	84 - 175	1.8e-22	Mitochondrial carrier protein
Mito_carr	PF00153	184 - 277	3.4e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25380 AT1G25380
fragaria_vesca	FvH4_4g26870 FvH4_4g26870 FvH4_4g26870
malus_domestica	MD13G1036400.v1.1 MD16G1039000.v1.1
prunus_persica	Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1 Prupe.1G315700_v2.0.a1
pyrus_communis	pycom13g03170 pycom16g03340
rosa_chinensis	RchiOBHm_Chr4g0434631
rosa_laevigata	RLG00000006661
rosa_multiflora	Rmu_co8445801.1_g000001 Rmu_sc0005783.1_g000002 Rmu_sc0005899.1_g000017
rosa_roxburghii	Rroxscaffold_5G00375870
rosa_rugosa	Rorug04G0277300
rosa_samantha	Rh4AG333200 Rh4BG341400 Rh4CG356200
rosa_wichuraiana	Rw4G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	9 cut(s)	6, 39, 78, 92, 272, 514, 770, 980, 1030
AclWI	GGATC	1 cut(s)	944
AcsI	RAATTY	1 cut(s)	844
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	709, 986
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	202, 396, 731, 758
AjnI	CCWGG	5 cut(s)	33, 128, 448, 722, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	2 cut(s)	362, 1090
AluI	AGCT	2 cut(s)	362, 1090
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	944
AoxI	GGCC	6 cut(s)	15, 36, 232, 446, 684, 811
ApeKI	GCWGC	6 cut(s)	95, 362, 365, 380, 982, 1087
ApoI	RAATTY	1 cut(s)	844
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	2 cut(s)	797, 813
AspLEI	GCGC	3 cut(s)	74, 256, 839
AspS9I	GGNCC	2 cut(s)	16, 139
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	2 cut(s)	181, 945
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	6 cut(s)	82, 349, 352, 367, 994, 1099
BccI	CCATC	2 cut(s)	320, 959
BceAI	ACGGC	2 cut(s)	30, 47
BciT130I	CCWGG	5 cut(s)	35, 130, 450, 724, 819
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	2 cut(s)	188, 311
BfoI	RGCGCY	1 cut(s)	75
BglII	AGATCT	1 cut(s)	476
Bme1390I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	16, 139
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
BmrI	ACTGGG	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	142, 644
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 986
Bse118I	RCCGGY	3 cut(s)	68, 80, 155
Bse1I	ACTGG	4 cut(s)	272, 687, 885, 1070
Bse3DI	GCAATG	1 cut(s)	976
BseBI	CCWGG	5 cut(s)	35, 130, 450, 724, 819
BseDI	CCNNGG	2 cut(s)	142, 644
BseGI	GGATG	3 cut(s)	121, 228, 331
BseLI	CCNNNNNNNGG	2 cut(s)	709, 986
BseMI	GCAATG	1 cut(s)	976
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	4 cut(s)	272, 687, 885, 1070
BseXI	GCAGC	6 cut(s)	82, 349, 352, 367, 994, 1099
BseYI	CCCAGC	2 cut(s)	374, 548
BshFI	GGCC	6 cut(s)	17, 38, 234, 448, 686, 813
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	4 cut(s)	69, 81, 156, 644
BslI	CCNNNNNNNGG	2 cut(s)	709, 986
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	6 cut(s)	17, 38, 234, 448, 686, 813
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	2 cut(s)	476, 949
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	9 cut(s)	6, 39, 78, 92, 272, 514, 770, 980, 1030
BspANI	GGCC	6 cut(s)	17, 38, 234, 448, 686, 813
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	192, 315
BspPI	GGATC	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	976
BsrFI	RCCGGY	3 cut(s)	68, 80, 155
BsrI	ACTGG	4 cut(s)	272, 687, 885, 1070
BssAI	RCCGGY	3 cut(s)	68, 80, 155
BssECI	CCNNGG	2 cut(s)	142, 644
BssMI	GATC	2 cut(s)	476, 949
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	2 cut(s)	181, 945
BssT1I	CCWWGG	1 cut(s)	142
Bst2BI	CACGAG	2 cut(s)	181, 945
Bst2UI	CCWGG	5 cut(s)	35, 130, 450, 724, 819
Bst4CI	ACNGT	3 cut(s)	286, 628, 833
Bst6I	CTCTTC	1 cut(s)	910
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	70, 149, 188, 744
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	121, 228, 331
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	74, 256, 839
BstKTI	GATC	2 cut(s)	479, 952
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	476, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	336, 371, 380, 386, 733
BstNI	CCWGG	5 cut(s)	35, 130, 450, 724, 819
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
BstSFI	CTRYAG	2 cut(s)	188, 311
BstV1I	GCAGC	6 cut(s)	82, 349, 352, 367, 994, 1099
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	476, 949
BstYI	RGATCY	2 cut(s)	476, 949
BsuRI	GGCC	6 cut(s)	17, 38, 234, 448, 686, 813
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	121, 228, 331
BtsI	GCAGTG	2 cut(s)	337, 1006
BtsIMutI	CAGTG	3 cut(s)	337, 1006, 1102
Cac8I	GCNNGC	4 cut(s)	70, 149, 188, 744
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	3 cut(s)	74, 256, 839
Cfr10I	RCCGGY	3 cut(s)	68, 80, 155
Cfr13I	GGNCC	2 cut(s)	16, 139
CsiI	ACCWGGT	1 cut(s)	128
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	7 cut(s)	143, 148, 320, 472, 560, 604, 707
DdeI	CTNAG	1 cut(s)	501
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	2 cut(s)	478, 951
DpnII	GATC	2 cut(s)	476, 949
Eam1104I	CTCTTC	1 cut(s)	910
EarI	CTCTTC	1 cut(s)	910
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	2 cut(s)	448, 813
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	139
EcoRII	CCWGG	5 cut(s)	33, 128, 448, 722, 817
EcoRV	GATATC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	7 cut(s)	146, 151, 323, 475, 563, 607, 710
FatI	CATG	7 cut(s)	142, 147, 319, 471, 559, 603, 706
FauI	CCCGC	2 cut(s)	507, 763
FblI	GTMKAC	1 cut(s)	307
FokI	GGATG	3 cut(s)	128, 235, 338
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	3 cut(s)	73, 255, 838
GsaI	CCCAGC	2 cut(s)	378, 552
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	6 cut(s)	17, 38, 234, 448, 686, 813
HapII	CCGG	4 cut(s)	69, 81, 156, 644
HhaI	GCGC	3 cut(s)	74, 256, 839
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	7 cut(s)	146, 151, 323, 475, 563, 607, 710
Hin6I	GCGC	3 cut(s)	72, 254, 837
HinP1I	GCGC	3 cut(s)	72, 254, 837
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	4 cut(s)	69, 81, 156, 644
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	308, 335
Hpy188I	TCNGA	4 cut(s)	28, 264, 931, 964
Hpy188III	TCNNGA	5 cut(s)	124, 181, 707, 731, 945
Hpy8I	GTNNAC	2 cut(s)	308, 335
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	7 cut(s)	500, 549, 787, 803, 824, 873, 1032
HpyCH4III	ACNGT	3 cut(s)	286, 628, 833
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	4 cut(s)	190, 313, 430, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	336, 371, 380, 386, 733
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	7 cut(s)	146, 151, 323, 475, 563, 607, 710
HspAI	GCGC	3 cut(s)	72, 254, 837
KasI	GGCGCC	1 cut(s)	71
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	476, 949
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	6 cut(s)	82, 349, 352, 367, 994, 1099
MabI	ACCWGGT	1 cut(s)	128
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	4 cut(s)	132, 178, 315, 887
MalI	GATC	2 cut(s)	478, 951
MboI	GATC	2 cut(s)	476, 949
MboII	GAAGA	3 cut(s)	43, 214, 927
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	476, 949
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	5 cut(s)	246, 342, 567, 844, 1065
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	51, 1054
MreI	CGCCGGCG	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	2 cut(s)	797, 813
MseI	TTAA	4 cut(s)	417, 638, 789, 848
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	4 cut(s)	69, 81, 156, 644
MspR9I	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	5 cut(s)	35, 130, 450, 724, 819
MwoI	GCNNNNNNNGC	5 cut(s)	336, 371, 380, 386, 733
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	645
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	476, 949
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	7 cut(s)	146, 151, 323, 475, 563, 607, 710
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	178, 315
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	706
PceI	AGGCCT	2 cut(s)	448, 813
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	797, 813
PfeI	GAWTC	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	155
PluTI	GGCGCC	1 cut(s)	75
Psp6I	CCWGG	5 cut(s)	33, 128, 448, 722, 817
PspFI	CCCAGC	2 cut(s)	374, 548
PspGI	CCWGG	5 cut(s)	33, 128, 448, 722, 817
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	16, 139
PstI	CTGCAG	2 cut(s)	192, 315
PsuI	RGATCY	2 cut(s)	476, 949
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	417, 638, 789, 848
Sau3AI	GATC	2 cut(s)	476, 949
Sau96I	GGNCC	2 cut(s)	16, 139
ScrFI	CCNGG	6 cut(s)	35, 130, 450, 645, 724, 819
SduI	GDGCHC	1 cut(s)	942
SexAI	ACCWGGT	1 cut(s)	128
SfcI	CTRYAG	2 cut(s)	188, 311
SfoI	GGCGCC	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	324
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	5 cut(s)	246, 342, 567, 844, 1065
SseBI	AGGCCT	2 cut(s)	448, 813
SsiI	CCGC	9 cut(s)	6, 39, 78, 92, 272, 514, 770, 980, 1030
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	747
StuI	AGGCCT	2 cut(s)	448, 813
StyD4I	CCNGG	6 cut(s)	33, 128, 448, 643, 722, 817
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	286, 628, 833
TaiI	ACGT	1 cut(s)	721
TasI	AATT	5 cut(s)	246, 342, 567, 844, 1065
TauI	GCSGC	4 cut(s)	9, 41, 95, 1033
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	4 cut(s)	417, 638, 789, 848
Tru9I	TTAA	4 cut(s)	417, 638, 789, 848
TscAI	CASTG	2 cut(s)	337, 1006
TseFI	GTSAC	2 cut(s)	178, 315
TseI	GCWGC	6 cut(s)	95, 362, 365, 380, 982, 1087
Tsp45I	GTSAC	2 cut(s)	178, 315
TspDTI	ATGAA	2 cut(s)	306, 600
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	337, 1006
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	844
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	797, 813
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.