AT1G25530

Tryptophan/tyrosine permease family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
8964544 .. 8967562
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25530.1

Sequence Viewer

Length: 1323 bp
ATGGTCTCTAGTTCTCCGGTTTCTCCGTCTAAGGAAACTGACCGGAAGTCCGGCGAGAAATGGACGGCGGAAGATCCATCACGGCCAGCCAAGTGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATTGGCGCGGGAGTCCTCAGCCTTCCTTATGCCATGGCTTACCTTGGCTGGGGACCAGGGACCTTTGTGTTGGCAATGACGTGGGGACTGACCCTAAACACTATGTGGCAAATGGTGCAGCTCCATGAGTGTGTACCGGGAACCCGGTTTGACCGGTATATCGATCTAGGCCGGTATGCTTTTGGCCCAAAACTTGGCCCATGGATCGTCCTCCCTCAACAGCTAATCGTCCAGGTCGGCTGCAACATCGTTTACATGGTGACAGGAGGCAAGTGCTTGAAGCAGTTCGTGGAGATCACTTGTTCCACCTGTACACCGGTACGACAGTCGTACTGGATCCTCGGCTTCGGTGGAGTCCATTTCATTCTCTCCCAGCTCCCTAACTTCAACTCCGTTGCCGGAGTCTCCCTGGCTGCCGCCGTCATGTCTCTCTGCTACTCGACGATAGCTTGGGGAGGAAGTATCGCACATGGAAGAGTGCCTGACGTGAGCTATGATTACAAGGCGACGAATCCGGGTGACTTCACATTCCGAGTCTTTAATGCGTTAGGTCAGATCTCATTCGCTTTCGCTGGCCACGCTGTGGCTCTAGAGATTCAAGCCACGATGCCTTCCACTCCTGAGAGACCATCCAAGGTGCCCATGTGGCAAGGAGTGATCGGAGCTTACGTGGTCAACGCCGTTTGCTATTTTCCTGTGGCTCTGATATGCTATTGGGCCTTTGGTCAAGACGTGGACGACAATGTGCTGATGAATCTACAGAGACCAGCTTGGCTCATTGCTGCTGCTAATCTCATGGTTGTTGTCCATGTCATTGGTAGCTACCAAGTGTTTGCTATGCCTGTCTTTGATCTTTTGGAGAGGATGATGGTTAACAAATTTGGTTTTAAGCATGGAGTTGTTCTGAGGTTTTTCACTCGAACTATTTATGTCGCATTTACATTGTTCATTGGAGTGAGTTTCCCCTTCTTTGGAGACCTTCTAGGCTTCTTTGGAGGATTTGGTTTTGCACCTACTTCTTTCTTCCTCCCAAGTATAATGTGGCTTATCATCAAGAAACCAAGGAGATTCAGCGTCACCTGGTTCGTCAATTGGATCTCCATTATCGTAGGAGTGTTCATAATGTTAGCGTCAACAATTGGAGGGTTGAGGAACATCATTGCAGATTCTTCTACTTATAGTTTCTACGCTTAA

Protein Analysis

440

Amino Acids

48.82

Weight (kDa)

9.03

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 29 - 424 2.3e-99 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 32 - 144 2.9e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 3 cut(s) 96, 323, 712
AccII CGCG 1 cut(s) 137
AciI CCGC 4 cut(s) 68, 123, 137, 546
AclWI GGATC 5 cut(s) 68, 341, 460, 473, 1232
AcoI YGGCCR 2 cut(s) 83, 703
AcsI RAATTY 1 cut(s) 1007
AdeI CACNNNGTG 2 cut(s) 234, 712
AfaI GTAC 5 cut(s) 101, 264, 442, 450, 461
AfiI CCNNNNNNNGG 5 cut(s) 96, 178, 323, 712, 1100
AgeI ACCGGT 2 cut(s) 282, 445
AgsI TTSAA 3 cut(s) 409, 517, 728
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 3 cut(s) 210, 616, 862
AjnI CCWGG 4 cut(s) 184, 360, 537, 1208
AluBI AGCT 8 cut(s) 250, 352, 505, 578, 621, 794, 899, 951
AluI AGCT 8 cut(s) 250, 352, 505, 578, 621, 794, 899, 951
Alw26I GTCTC 6 cut(s) 10, 538, 561, 748, 886, 1098
AlwI GGATC 5 cut(s) 68, 341, 460, 473, 1232
AoxI GGCC 6 cut(s) 83, 298, 313, 325, 703, 846
ApeKI GCWGC 5 cut(s) 247, 369, 542, 911, 914
ApoI RAATTY 1 cut(s) 1007
AsiGI ACCGGT 2 cut(s) 282, 445
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 5 cut(s) 182, 189, 314, 326, 846
AsuC2I CCSGG 3 cut(s) 267, 274, 645
AsuHPI GGTGA 4 cut(s) 112, 400, 659, 1198
AvaII GGWCC 2 cut(s) 182, 189
BaeGI GKGCMC 1 cut(s) 771
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BalI TGGCCA 1 cut(s) 705
BamHI GGATCC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 766
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 5 cut(s) 259, 356, 529, 898, 901
BccI CCATC 3 cut(s) 85, 766, 991
BceAI ACGGC 4 cut(s) 81, 98, 533, 794
BciT130I CCWGG 4 cut(s) 186, 362, 539, 1210
BcnI CCSGG 3 cut(s) 267, 274, 645
BcoDI GTCTC 6 cut(s) 10, 538, 561, 748, 886, 1098
BfaI CTAG 4 cut(s) 9, 296, 719, 1112
BfmI CTRYAG 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 684
BisI GCNGC 6 cut(s) 248, 370, 543, 546, 912, 915
BlsI GCNGC 6 cut(s) 249, 371, 544, 547, 913, 916
Bme1390I CCNGG 7 cut(s) 186, 267, 274, 362, 539, 645, 1210
Bme18I GGWCC 2 cut(s) 182, 189
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgBI CACGTC 3 cut(s) 210, 616, 862
BmgT120I GGNCC 5 cut(s) 182, 189, 314, 326, 846
BmiI GGNNCC 5 cut(s) 183, 190, 271, 467, 768
BmrFI CCNGG 7 cut(s) 186, 267, 274, 362, 539, 645, 1210
BmsI GCATC 1 cut(s) 726
Bpu10I CCTNAGC 1 cut(s) 146
BpuMI CCSGG 3 cut(s) 267, 274, 645
Bsa29I ATCGAT 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 799
BsaI GGTCTC 4 cut(s) 10, 748, 886, 1098
BsaJI CCNNGG 8 cut(s) 162, 172, 185, 329, 469, 537, 762, 1190
BsaWI WCCGGW 4 cut(s) 16, 42, 282, 445
BsaXI ACNNNNNCTCC 4 cut(s) 503, 533, 783, 813
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 178, 323, 712, 1100
Bse118I RCCGGY 3 cut(s) 282, 300, 445
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 3 cut(s) 210, 906, 1287
BseBI CCWGG 4 cut(s) 186, 362, 539, 1210
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 8 cut(s) 162, 172, 185, 329, 469, 537, 762, 1190
BseGI GGATG 2 cut(s) 758, 999
BseLI CCNNNNNNNGG 5 cut(s) 96, 178, 323, 712, 1100
BseMI GCAATG 3 cut(s) 210, 906, 1287
BseMII CTCAG 3 cut(s) 160, 741, 1025
BseNI ACTGG 1 cut(s) 467
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 5 cut(s) 259, 356, 529, 898, 901
BseYI CCCAGC 2 cut(s) 177, 501
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 6 cut(s) 85, 300, 315, 327, 705, 848
BshNI GGYRCC 1 cut(s) 766
BshTI ACCGGT 2 cut(s) 282, 445
BshVI ATCGAT 1 cut(s) 291
BslFI GGGAC 3 cut(s) 195, 202, 228
BslI CCNNNNNNNGG 5 cut(s) 96, 178, 323, 712, 1100
BsmAI GTCTC 6 cut(s) 10, 538, 561, 748, 886, 1098
BsmFI GGGAC 3 cut(s) 195, 202, 228
BsnI GGCC 6 cut(s) 85, 300, 315, 327, 705, 848
Bso31I GGTCTC 4 cut(s) 10, 748, 886, 1098
Bsp1286I GDGCHC 1 cut(s) 771
Bsp1407I TGTACA 1 cut(s) 440
Bsp143I GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
Bsp19I CCATGG 2 cut(s) 162, 329
BspACI CCGC 4 cut(s) 68, 123, 137, 546
BspANI GGCC 6 cut(s) 85, 300, 315, 327, 705, 848
BspCNI CTCAG 3 cut(s) 159, 742, 1026
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 5 cut(s) 183, 190, 271, 467, 768
BspPI GGATC 5 cut(s) 68, 341, 460, 473, 1232
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 4 cut(s) 10, 748, 886, 1098
BsrDI GCAATG 3 cut(s) 210, 906, 1287
BsrFI RCCGGY 3 cut(s) 282, 300, 445
BsrGI TGTACA 1 cut(s) 440
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 3 cut(s) 282, 300, 445
BssECI CCNNGG 8 cut(s) 162, 172, 185, 329, 469, 537, 762, 1190
BssMI GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
BssT1I CCWWGG 5 cut(s) 162, 172, 329, 762, 1190
Bst2UI CCWGG 4 cut(s) 186, 362, 539, 1210
Bst4CI ACNGT 2 cut(s) 118, 456
Bst6I CTCTTC 1 cut(s) 598
BstAPI GCANNNNNTGC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 799
BstC8I GCNNGC 2 cut(s) 87, 703
BstDEI CTNAG 4 cut(s) 30, 146, 750, 1034
BstDSI CCRYGG 2 cut(s) 162, 329
BstF5I GGATG 2 cut(s) 758, 999
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 9 cut(s) 76, 295, 336, 426, 468, 687, 789, 982, 1227
BstMAI GTCTC 6 cut(s) 10, 538, 561, 748, 886, 1098
BstMBI GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
BstMWI GCNNNNNNNGC 3 cut(s) 244, 707, 775
BstNI CCWGG 4 cut(s) 186, 362, 539, 1210
BstSCI CCNGG 7 cut(s) 184, 265, 272, 360, 537, 643, 1208
BstSFI CTRYAG 1 cut(s) 887
BstSLI GKGCMC 1 cut(s) 771
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 5 cut(s) 259, 356, 529, 898, 901
BstX2I RGATCY 4 cut(s) 73, 465, 684, 1224
BstXI CCANNNNNNTGG 2 cut(s) 93, 944
BstYI RGATCY 4 cut(s) 73, 465, 684, 1224
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 6 cut(s) 85, 300, 315, 327, 705, 848
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 2 cut(s) 162, 329
BtrI CACGTC 3 cut(s) 210, 616, 862
BtsCI GGATG 2 cut(s) 758, 999
Cac8I GCNNGC 2 cut(s) 87, 703
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 3 cut(s) 282, 300, 445
Cfr13I GGNCC 5 cut(s) 182, 189, 314, 326, 846
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 2 cut(s) 1192, 1248
CsiI ACCWGGT 1 cut(s) 1208
Csp6I GTAC 5 cut(s) 100, 263, 441, 449, 460
CspAI ACCGGT 2 cut(s) 282, 445
CviQI GTAC 5 cut(s) 100, 263, 441, 449, 460
DdeI CTNAG 4 cut(s) 30, 146, 750, 1034
DpnI GATC 9 cut(s) 75, 294, 335, 425, 467, 686, 788, 981, 1226
DpnII GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
DraIII CACNNNGTG 2 cut(s) 234, 712
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 83, 703
Eam1104I CTCTTC 1 cut(s) 598
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 598
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 5 cut(s) 162, 172, 329, 762, 1190
Eco31I GGTCTC 4 cut(s) 10, 748, 886, 1098
Eco47I GGWCC 2 cut(s) 182, 189
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 4 cut(s) 184, 360, 537, 1208
EcoT14I CCWWGG 5 cut(s) 162, 172, 329, 762, 1190
ErhI CCWWGG 5 cut(s) 162, 172, 329, 762, 1190
FaqI GGGAC 3 cut(s) 195, 202, 228
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 248, 370, 543, 546, 912, 915
FokI GGATG 2 cut(s) 745, 1006
Fsp4HI GCNGC 6 cut(s) 248, 370, 543, 546, 912, 915
FspBI CTAG 4 cut(s) 9, 296, 719, 1112
GlaI GCGC 1 cut(s) 136
GluI GCNGC 6 cut(s) 248, 370, 543, 546, 912, 915
GsaI CCCAGC 2 cut(s) 181, 505
HaeIII GGCC 6 cut(s) 85, 300, 315, 327, 705, 848
HgaI GACGC 2 cut(s) 1192, 1248
HhaI GCGC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 3 cut(s) 805, 1003, 1263
HindII GTYRAC 3 cut(s) 805, 1003, 1263
HinfI GANTC 9 cut(s) 141, 483, 531, 640, 663, 724, 883, 1197, 1295
HpaI GTTAAC 1 cut(s) 1003
HphI GGTGA 4 cut(s) 112, 400, 659, 1198
Hpy166II GTNNAC 7 cut(s) 263, 382, 443, 805, 865, 1003, 1263
Hpy188I TCNGA 5 cut(s) 662, 684, 791, 834, 1035
Hpy188III TCNNGA 4 cut(s) 719, 749, 857, 1183
Hpy8I GTNNAC 7 cut(s) 263, 382, 443, 805, 865, 1003, 1263
Hpy99I CGWCG 2 cut(s) 574, 640
HpyAV CCTTC 5 cut(s) 118, 161, 750, 1105, 1118
HpyCH4III ACNGT 2 cut(s) 118, 456
HpyCH4IV ACGT 4 cut(s) 209, 615, 798, 861
HpyCH4V TGCA 4 cut(s) 247, 372, 1139, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 707, 775
HpyF3I CTNAG 4 cut(s) 30, 146, 750, 1034
HpySE526I ACGT 4 cut(s) 209, 615, 798, 861
HspAI GCGC 1 cut(s) 135
KspAI GTTAAC 1 cut(s) 1003
Kzo9I GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
LmnI GCTCC 3 cut(s) 255, 510, 791
Lsp1109I GCAGC 5 cut(s) 259, 356, 529, 898, 901
LweI GCATC 1 cut(s) 726
MabI ACCWGGT 1 cut(s) 1208
MaeI CTAG 4 cut(s) 9, 296, 719, 1112
MaeII ACGT 4 cut(s) 209, 615, 798, 861
MaeIII GTNAC 4 cut(s) 118, 388, 647, 1204
MalI GATC 9 cut(s) 75, 294, 335, 425, 467, 686, 788, 981, 1226
MboI GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
MboII GAAGA 4 cut(s) 83, 615, 1144, 1290
MfeI CAATTG 2 cut(s) 1219, 1266
MflI RGATCY 4 cut(s) 73, 465, 684, 1224
MhlI GDGCHC 1 cut(s) 771
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 3 cut(s) 1007, 1219, 1266
MluNI TGGCCA 1 cut(s) 705
MlyI GAGTC 4 cut(s) 150, 492, 540, 672
Mox20I TGGCCA 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 705
MseI TTAA 4 cut(s) 669, 1002, 1017, 1321
MslI CAYNNNNRTG 3 cut(s) 125, 258, 1082
Msp20I TGGCCA 1 cut(s) 705
MspR9I CCNGG 7 cut(s) 186, 267, 274, 362, 539, 645, 1210
MunI CAATTG 2 cut(s) 1219, 1266
MvaI CCWGG 4 cut(s) 186, 362, 539, 1210
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 244, 707, 775
NciI CCSGG 3 cut(s) 267, 274, 645
NcoI CCATGG 2 cut(s) 162, 329
NdeII GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
NlaIV GGNNCC 5 cut(s) 183, 190, 271, 467, 768
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 4 cut(s) 118, 388, 647, 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 5 cut(s) 640, 724, 883, 1197, 1295
PflMI CCANNNNNTGG 3 cut(s) 96, 323, 712
PinAI ACCGGT 2 cut(s) 282, 445
PkrI GCNGC 6 cut(s) 249, 371, 544, 547, 913, 916
PleI GAGTC 4 cut(s) 149, 491, 539, 671
PpsI GAGTC 4 cut(s) 149, 491, 539, 671
Ppu21I YACGTR 1 cut(s) 799
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 4 cut(s) 184, 360, 537, 1208
PspFI CCCAGC 2 cut(s) 177, 501
PspGI CCWGG 4 cut(s) 184, 360, 537, 1208
PspN4I GGNNCC 5 cut(s) 183, 190, 271, 467, 768
PspPI GGNCC 5 cut(s) 182, 189, 314, 326, 846
PspPPI RGGWCCY 1 cut(s) 189
PsuI RGATCY 4 cut(s) 73, 465, 684, 1224
RsaI GTAC 5 cut(s) 101, 264, 442, 450, 461
RsaNI GTAC 5 cut(s) 100, 263, 441, 449, 460
RseI CAYNNNNRTG 3 cut(s) 125, 258, 1082
SaqAI TTAA 4 cut(s) 669, 1002, 1017, 1321
SatI GCNGC 6 cut(s) 248, 370, 543, 546, 912, 915
Sau3AI GATC 9 cut(s) 73, 292, 333, 423, 465, 684, 786, 979, 1224
Sau96I GGNCC 5 cut(s) 182, 189, 314, 326, 846
SchI GAGTC 4 cut(s) 150, 492, 540, 672
ScrFI CCNGG 7 cut(s) 186, 267, 274, 362, 539, 645, 1210
SduI GDGCHC 1 cut(s) 771
SexAI ACCWGGT 1 cut(s) 1208
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 1 cut(s) 887
SinI GGWCC 2 cut(s) 182, 189
SmiMI CAYNNNNRTG 3 cut(s) 125, 258, 1082
Sse9I AATT 3 cut(s) 1007, 1219, 1266
SsiI CCGC 4 cut(s) 68, 123, 137, 546
SspMI CTAG 4 cut(s) 9, 296, 719, 1112
StyD4I CCNGG 7 cut(s) 184, 265, 272, 360, 537, 643, 1208
StyI CCWWGG 5 cut(s) 162, 172, 329, 762, 1190
TaaI ACNGT 2 cut(s) 118, 456
TaiI ACGT 4 cut(s) 212, 618, 801, 864
TaqI TCGA 3 cut(s) 291, 569, 1048
TasI AATT 3 cut(s) 1007, 1219, 1266
TatI WGTACW 1 cut(s) 440
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 5 cut(s) 640, 724, 883, 1197, 1295
Tru1I TTAA 4 cut(s) 669, 1002, 1017, 1321
Tru9I TTAA 4 cut(s) 669, 1002, 1017, 1321
TseFI GTSAC 4 cut(s) 118, 388, 647, 1204
TseI GCWGC 5 cut(s) 247, 369, 542, 911, 914
Tsp45I GTSAC 4 cut(s) 118, 388, 647, 1204
TspDTI ATGAA 4 cut(s) 481, 896, 1066, 1237
TspGWI ACGGA 2 cut(s) 15, 511
Van91I CCANNNNNTGG 3 cut(s) 96, 323, 712
VpaK11BI GGWCC 2 cut(s) 182, 189
XapI RAATTY 1 cut(s) 1007
XbaI TCTAGA 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 2 cut(s) 93, 1167
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 4 cut(s) 9, 296, 719, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.