FvH4_4g27960

Lysine histidine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
28749673 .. 28753127
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27960.t4

Sequence Viewer

Length: 1320 bp
ATGGTTTCAACTTCTCCTCCTCCAAAGCAGCAGGAAGCTCTTTCAGACAACAAATGGAAGGAGGAGGCAGACAACACACGCCGCGCCAAATGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATAGGTGCCGGTGTCCTCAGCCTACCATATGCCATGGCCTACTTAGGATGGGGTCCGGGGACAATGGTACTGGCAGTTTCTTGGTGCATGACCTTGAACACAATGTGGCAGATGATACAACTCCATGAATGTGTTCCAGGGGTTCGCTTTGATCGGTACATAGACCTCGGTCGACATGCCTTCGGTCCTAAACTCGGGCCATGGATCGTGCTTCCACAGCAGCTAATCGTCCAAATTGGGTGTGACATAGTGTACATGGTCACTGGGGGAAAGTGTCTGAAGCAGTTCATGGAGATGGCGTGCTCTAGTTGCACACCAATCAAGCAATCCTACTGGATTTTGATGTTTGGTTCCATTCATTTCTTCCTTTCCCAGCTTCCCAACTTCAACTCTGTCGCTGGTGTTTCGCTAGCAGCAGCTATCATGTCACTAAGTTATTCCACAATAGCTTGGGCAGGTTGCTTAAGTAAAGGCCCGGTAGATAATGTTAGCTATGCATACAAGAAAACAAGCTCAGTTGATTACATGTTCCGGGTGTTCAATTCACTTGGTCAAATCTCGTTTGCATTTGCCGGACATGCTGTGGCTCTTGAAATTCAGGCAACAATGCCATCAACTCCGGAGAGGCCTTCACGAATACCGATGTGGAAAGGTGCCGTTGGAGCCTATATTATTAATGCAATTTGCTATTTCCCGGTGGCCCTGATCGGTTACTGGGCTTTTGGGCAAGATGTTGCTGATAATGTCCTAGTGGACCTCAAGAGACCTGCTTGGCTAAGTGCATCTGCAAATTTAATGGTTGTTGTCCATGTTATTGGCAGCTATCAGGTTTTTGCTATGCCGGTTTTTGACTTGTTAGAGAGGATGATGATGAAAAAACTGAACTTCCCACCTGGAGTGGCACTTAGACTAGTTGCTAGATCAGCTTATGTTGCATTCACATTGTTTGTTGGAGTCACCTTCCCTTTCTTTGGAGACCTTCTTGGTTTCTTCGGCGGGTTTGGTTTCGCCCCAACTTCATACTTTCTTCCTAGTATAATGTGGCTAGCTATCAAGAAACCGAAGAGATTCAGCACCAATTGGTTCGTCAACTGGGCTTCCATATTTGTTGGAGTGTTCATTATGTTAGCATCCACCATTGGTGGTTTCAGGAACATCGTCACTGACGCATCCACATATCGTTTCTACACTTAA

Protein Analysis

440

Amino Acids

48.9

Weight (kDa)

9.28

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 27 - 422 4.8e-100 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 29 - 158 8e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 572, 901
AccB1I GGYRCC 2 cut(s) 131, 779
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 298
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 3 cut(s) 82, 120, 1122
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 2 cut(s) 720, 916
AcuI CTGAAG 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 231
AfaI GTAC 4 cut(s) 98, 195, 284, 380
AfiI CCNNNNNNNGG 3 cut(s) 93, 320, 1097
AflII CTTAAG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 9, 223, 514, 667, 719
AhlI ACTAGT 1 cut(s) 1036
AjnI CCWGG 2 cut(s) 262, 1018
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 883, 1095
AlwI GGATC 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 320
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 5 cut(s) 162, 323, 598, 752, 825
ApeKI GCWGC 5 cut(s) 28, 346, 539, 542, 945
ApoI RAATTY 2 cut(s) 720, 916
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 3 cut(s) 258, 410, 1193
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
AsuC2I CCSGG 4 cut(s) 183, 602, 659, 821
AsuHPI GGTGA 2 cut(s) 109, 1075
AsuNHI GCTAGC 2 cut(s) 535, 1171
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 179, 311, 880
BanI GGYRCC 2 cut(s) 131, 779
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 5 cut(s) 40, 358, 551, 554, 957
BccI CCATC 3 cut(s) 168, 415, 745
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 2 cut(s) 264, 1020
BcnI CCSGG 4 cut(s) 183, 602, 659, 821
BcoDI GTCTC 2 cut(s) 883, 1095
BcuI ACTAGT 1 cut(s) 1036
BfaI CTAG 7 cut(s) 432, 536, 875, 1037, 1044, 1158, 1172
BfrI CTTAAG 1 cut(s) 589
BfuAI ACCTGC 2 cut(s) 572, 901
BisI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
BlsI GCNGC 6 cut(s) 30, 83, 348, 541, 544, 947
Bme1390I CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
Bme18I GGWCC 3 cut(s) 179, 311, 880
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
BmiI GGNNCC 5 cut(s) 133, 180, 478, 781, 790
BmrFI CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
BmrI ACTGGG 3 cut(s) 399, 850, 1228
BmsI GCATC 3 cut(s) 917, 1265, 1304
BmtI GCTAGC 2 cut(s) 539, 1175
BmuI ACTGGG 3 cut(s) 399, 850, 1228
BoxI GACNNNNGTC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 4 cut(s) 183, 602, 659, 821
BsaI GGTCTC 2 cut(s) 883, 1095
BsaJI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 3 cut(s) 31, 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 320, 1097
Bse118I RCCGGY 2 cut(s) 134, 967
Bse1I ACTGG 5 cut(s) 201, 394, 464, 845, 1223
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 2 cut(s) 264, 1020
BseDI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BseGI GGATG 4 cut(s) 179, 996, 1256, 1295
BseLI CCNNNNNNNGG 3 cut(s) 93, 320, 1097
BseMII CTCAG 2 cut(s) 157, 654
BseNI ACTGG 5 cut(s) 201, 394, 464, 845, 1223
BseRI GAGGAG 3 cut(s) 6, 9, 77
BseXI GCAGC 5 cut(s) 40, 358, 551, 554, 957
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 5 cut(s) 164, 325, 600, 754, 827
BshNI GGYRCC 2 cut(s) 131, 779
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 8 cut(s) 135, 182, 602, 658, 699, 746, 821, 968
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 93, 320, 1097
BsmAI GTCTC 2 cut(s) 883, 1095
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 1061
BsnI GGCC 5 cut(s) 164, 325, 600, 754, 827
Bso31I GGTCTC 2 cut(s) 883, 1095
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 431
Bsp13I TCCGGA 1 cut(s) 745
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 4 cut(s) 277, 330, 831, 1046
Bsp19I CCATGG 2 cut(s) 159, 326
BspACI CCGC 3 cut(s) 82, 120, 1122
BspANI GGCC 5 cut(s) 164, 325, 600, 754, 827
BspCNI CTCAG 2 cut(s) 156, 653
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 5 cut(s) 133, 180, 478, 781, 790
BspMI ACCTGC 2 cut(s) 572, 901
BspOI GCTAGC 2 cut(s) 539, 1175
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 2 cut(s) 131, 779
BspTI CTTAAG 1 cut(s) 589
BspTNI GGTCTC 2 cut(s) 883, 1095
BsrFI RCCGGY 2 cut(s) 134, 967
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 5 cut(s) 201, 394, 464, 845, 1223
BssAI RCCGGY 2 cut(s) 134, 967
BssECI CCNNGG 5 cut(s) 159, 182, 263, 292, 326
BssMI GATC 4 cut(s) 277, 330, 831, 1046
BssT1I CCWWGG 2 cut(s) 159, 326
Bst2UI CCWGG 2 cut(s) 264, 1020
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 1184
BstAFI CTTAAG 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 427, 537, 1173
BstDEI CTNAG 6 cut(s) 143, 169, 557, 640, 902, 1031
BstDSI CCRYGG 2 cut(s) 159, 326
BstF5I GGATG 4 cut(s) 179, 996, 1256, 1295
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 280, 333, 834, 1049
BstMAI GTCTC 2 cut(s) 883, 1095
BstMBI GATC 4 cut(s) 277, 330, 831, 1046
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 6 cut(s) 343, 435, 704, 788, 1049, 1058
BstNI CCWGG 2 cut(s) 264, 1020
BstNSI RCATGY 3 cut(s) 305, 655, 707
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 6 cut(s) 181, 262, 600, 657, 819, 1018
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 5 cut(s) 40, 358, 551, 554, 957
BstXI CCANNNNNNTGG 1 cut(s) 941
BsuRI GGCC 5 cut(s) 164, 325, 600, 754, 827
BtgI CCRYGG 2 cut(s) 159, 326
BtsCI GGATG 4 cut(s) 179, 996, 1256, 1295
BtsIMutI CAGTG 2 cut(s) 387, 1287
BveI ACCTGC 2 cut(s) 572, 901
Cac8I GCNNGC 3 cut(s) 427, 537, 1173
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 2 cut(s) 134, 967
Cfr13I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
CseI GACGC 1 cut(s) 1301
Csp6I GTAC 4 cut(s) 97, 194, 283, 379
CviQI GTAC 4 cut(s) 97, 194, 283, 379
DdeI CTNAG 6 cut(s) 143, 169, 557, 640, 902, 1031
DpnI GATC 4 cut(s) 279, 332, 833, 1048
DpnII GATC 4 cut(s) 277, 330, 831, 1046
DraIII CACNNNGTG 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 1184
EarI CTCTTC 1 cut(s) 1184
Eco130I CCWWGG 2 cut(s) 159, 326
Eco147I AGGCCT 1 cut(s) 754
Eco31I GGTCTC 2 cut(s) 883, 1095
Eco47I GGWCC 3 cut(s) 179, 311, 880
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 262, 1018
EcoT14I CCWWGG 2 cut(s) 159, 326
EcoT22I ATGCAT 1 cut(s) 625
ErhI CCWWGG 2 cut(s) 159, 326
FaqI GGGAC 1 cut(s) 199
FauI CCCGC 1 cut(s) 1115
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
FokI GGATG 4 cut(s) 186, 1003, 1243, 1282
Fsp4HI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
FspBI CTAG 7 cut(s) 432, 536, 875, 1037, 1044, 1158, 1172
GlaI GCGC 1 cut(s) 85
GluI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
GsaI CCCAGC 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 5 cut(s) 164, 325, 600, 754, 827
HapII CCGG 8 cut(s) 135, 182, 602, 658, 699, 746, 821, 968
HgaI GACGC 1 cut(s) 1301
HhaI GCGC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 299, 1216
HindII GTYRAC 2 cut(s) 299, 1216
HinfI GANTC 2 cut(s) 1080, 1194
HpaII CCGG 8 cut(s) 135, 182, 602, 658, 699, 746, 821, 968
HphI GGTGA 2 cut(s) 109, 1075
Hpy166II GTNNAC 4 cut(s) 299, 379, 880, 1216
Hpy188I TCNGA 2 cut(s) 46, 405
Hpy188III TCNNGA 6 cut(s) 716, 746, 759, 886, 1180, 1276
Hpy8I GTNNAC 4 cut(s) 299, 379, 880, 1216
HpyAV CCTTC 6 cut(s) 52, 115, 316, 765, 1096, 1115
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 8 cut(s) 213, 438, 623, 692, 806, 908, 914, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 343, 435, 704, 788, 1049, 1058
HpyF3I CTNAG 6 cut(s) 143, 169, 557, 640, 902, 1031
HspAI GCGC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 745
Kzo9I GATC 4 cut(s) 277, 330, 831, 1046
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 5 cut(s) 40, 358, 551, 554, 957
LweI GCATC 3 cut(s) 917, 1265, 1304
MaeI CTAG 7 cut(s) 432, 536, 875, 1037, 1044, 1158, 1172
MaeIII GTNAC 7 cut(s) 115, 368, 385, 552, 836, 1081, 1285
MalI GATC 4 cut(s) 279, 332, 833, 1048
MboI GATC 4 cut(s) 277, 330, 831, 1046
MboII GAAGA 4 cut(s) 481, 1108, 1145, 1201
MfeI CAATTG 1 cut(s) 1204
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 6 cut(s) 360, 667, 720, 807, 916, 1204
MlyI GAGTC 1 cut(s) 1089
MmeI TCCRAC 3 cut(s) 766, 1057, 1216
MnlI CCTC 9 cut(s) 27, 30, 55, 58, 152, 302, 744, 893, 981
Mph1103I ATGCAT 1 cut(s) 625
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 3 cut(s) 258, 410, 1193
MseI TTAA 4 cut(s) 590, 801, 920, 1318
MslI CAYNNNNRTG 3 cut(s) 122, 255, 419
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 8 cut(s) 135, 182, 602, 658, 699, 746, 821, 968
MspR9I CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
MunI CAATTG 1 cut(s) 1204
Mva1269I GAATGC 1 cut(s) 1061
MvaI CCWGG 2 cut(s) 264, 1020
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 6 cut(s) 343, 435, 704, 788, 1049, 1058
NciI CCSGG 4 cut(s) 183, 602, 659, 821
NcoI CCATGG 2 cut(s) 159, 326
NdeI CATATG 1 cut(s) 154
NdeII GATC 4 cut(s) 277, 330, 831, 1046
NheI GCTAGC 2 cut(s) 535, 1171
NlaIV GGNNCC 5 cut(s) 133, 180, 478, 781, 790
NmuCI GTSAC 6 cut(s) 115, 368, 385, 552, 1081, 1285
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 3 cut(s) 305, 655, 707
PceI AGGCCT 1 cut(s) 754
PciI ACATGT 1 cut(s) 651
PctI GAATGC 1 cut(s) 1061
PdmI GAANNNNTTC 3 cut(s) 258, 410, 1193
PfeI GAWTC 1 cut(s) 1194
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 6 cut(s) 30, 83, 348, 541, 544, 947
PleI GAGTC 1 cut(s) 1088
PpsI GAGTC 1 cut(s) 1088
PscI ACATGT 1 cut(s) 651
PshAI GACNNNNGTC 1 cut(s) 294
PshBI ATTAAT 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 262, 1018
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 2 cut(s) 262, 1018
PspN4I GGNNCC 5 cut(s) 133, 180, 478, 781, 790
PspPI GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
RsaI GTAC 4 cut(s) 98, 195, 284, 380
RsaNI GTAC 4 cut(s) 97, 194, 283, 379
RseI CAYNNNNRTG 3 cut(s) 122, 255, 419
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 4 cut(s) 590, 801, 920, 1318
SatI GCNGC 6 cut(s) 29, 82, 347, 540, 543, 946
Sau3AI GATC 4 cut(s) 277, 330, 831, 1046
Sau96I GGNCC 6 cut(s) 179, 311, 323, 599, 826, 880
SchI GAGTC 1 cut(s) 1089
ScrFI CCNGG 6 cut(s) 183, 264, 602, 659, 821, 1020
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 3 cut(s) 917, 1265, 1304
SinI GGWCC 3 cut(s) 179, 311, 880
SmiMI CAYNNNNRTG 3 cut(s) 122, 255, 419
SmlI CTYRAG 2 cut(s) 589, 884
SmoI CTYRAG 2 cut(s) 589, 884
SpeI ACTAGT 1 cut(s) 1036
Sse9I AATT 6 cut(s) 360, 667, 720, 807, 916, 1204
SseBI AGGCCT 1 cut(s) 754
SsiI CCGC 3 cut(s) 82, 120, 1122
SspMI CTAG 7 cut(s) 432, 536, 875, 1037, 1044, 1158, 1172
StuI AGGCCT 1 cut(s) 754
StyD4I CCNGG 6 cut(s) 181, 262, 600, 657, 819, 1018
StyI CCWWGG 2 cut(s) 159, 326
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 298
TaqII GACCGA 2 cut(s) 284, 299
TasI AATT 6 cut(s) 360, 667, 720, 807, 916, 1204
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 1194
Tru1I TTAA 4 cut(s) 590, 801, 920, 1318
Tru9I TTAA 4 cut(s) 590, 801, 920, 1318
TscAI CASTG 2 cut(s) 394, 1294
TseFI GTSAC 6 cut(s) 115, 368, 385, 552, 1081, 1285
TseI GCWGC 5 cut(s) 28, 346, 539, 542, 945
Tsp45I GTSAC 6 cut(s) 115, 368, 385, 552, 1081, 1285
TspDTI ATGAA 6 cut(s) 267, 403, 473, 1013, 1134, 1234
TspRI CASTG 2 cut(s) 394, 1294
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 3 cut(s) 179, 311, 880
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 2 cut(s) 720, 916
XceI RCATGY 3 cut(s) 305, 655, 707
XmiI GTMKAC 1 cut(s) 298
XmnI GAANNNNTTC 3 cut(s) 258, 410, 1193
XspI CTAG 7 cut(s) 432, 536, 875, 1037, 1044, 1158, 1172
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.