Rorug04G0287800

Lysine histidine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011639
Physical Location & Seq
Forward (+)
46109797 .. 46110633
837 bp
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UTR
Exon/CDS
Intron
Rorug04G0287800.1

Sequence Viewer

Length: 837 bp
ATGGCTAGTGCTGCAAAGCACCTTACACCTGTTCTTTTGGAGCTTGGAGGCAAATCTCCTGTTGTTGTTGATTCTGGCATTAACTTACAAGTCGCAAGTAGGCGGATAATTGTAGGAAAGTGGGGGTGTAATAATGGACAGGCTTGTATTTCCCCTGATTACATTATAACAACAAAAGATTTTGCTTCTAAATTGGTGGATGCCATGAAAAGTGAATTGGATGGCTTTTATGGGAAGAATCCGCTACAGTCAAAAGATCTGTCTCGTATAGTGAATTATAATCACTATGCTCGCTTGACAAATCTGTTGGATGAGGATAAGGTTTCTGGGAAGGTCATCCATGGAGGTGAAAGGGACACGAGCAACTTGAGGATAGCTCCCACCGTCTTACTCGATGTCCCACAGGACTCCCTGATGATGCAGGAGGAGATCTTTGGTCCCTTGCTACCTATTATCACGGTTGACAAGATAGAAGACAGCTTTGATTTGATAAACTCAGGAACAAAGCCGCTTGCTGCATATTTGTTTACCAACAACCAGAAGCTGAAGGATCAGTTTGTAAGGAATATCTCTGCAGGAGGTATGGTTATCAATGACACTACCATTCATCTCGCTGTTCCCTCCTTGCCATTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTTGAAGCCTTCAGCCATAAGAAAGCAGTTGTTTGTCGAGGTTTTTTTGGAGATGCTTCTTTGAGGTACCCTCCATACACAGAGGGGAAGCTAAGTGTTCTAAAGGCTCTGGTCGGTGGTGATAGTATAGTGGACATAATCCTCTCTCTGTTCTGA

Protein Analysis

278

Amino Acids

30.12

Weight (kDa)

6.59

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 2 - 237 4.5e-47 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011639)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25530
fragaria_vesca FvH4_4g27830 FvH4_4g27960 FvH4_4g27960 FvH4_4g27960 FvH4_4g27960
malus_domestica MD13G1045300.v1.1 MD16G1046600.v1.1 MD16G1047100.v1.1
prunus_persica Prupe.1G306700_v2.0.a1 Prupe.1G306700_v2.0.a1
pyrus_communis pycom13g03990 pycom16g04100
rosa_chinensis RchiOBHm_Chr4g0435661
rosa_laevigata RLG00000006569
rosa_multiflora Rmu_sc0000051.1_g000010
rosa_rugosa Rorug04G0287800
rosa_samantha Rh4AG342900
rosa_wichuraiana Rw4G029930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 167, 279
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 747
AciI CCGC 3 cut(s) 103, 242, 509
AclWI GGATC 1 cut(s) 558
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 2 cut(s) 566, 676
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 1 cut(s) 635
AgsI TTSAA 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 5 cut(s) 43, 377, 480, 544, 772
AluI AGCT 5 cut(s) 43, 377, 480, 544, 772
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 544
ApeKI GCWGC 2 cut(s) 11, 515
ApoI RAATTY 1 cut(s) 674
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp718I GGTACC 1 cut(s) 747
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 359, 812
AvaII GGWCC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 747
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 502
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 2 cut(s) 245, 573
BglII AGATCT 2 cut(s) 256, 429
BisI GCNGC 3 cut(s) 12, 509, 516
BlsI GCNGC 3 cut(s) 13, 510, 517
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 439, 749
BmsI GCATC 3 cut(s) 190, 408, 724
BpiI GAAGAC 1 cut(s) 480
BplI GAGNNNNNCTC 4 cut(s) 361, 393, 736, 768
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 340, 667
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 635
BseDI CCNNGG 2 cut(s) 340, 667
BseGI GGATG 4 cut(s) 205, 226, 316, 336
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 2 cut(s) 440, 651
BseXI GCAGC 1 cut(s) 502
BshNI GGYRCC 1 cut(s) 747
BslFI GGGAC 3 cut(s) 368, 383, 423
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 3 cut(s) 368, 383, 423
Bsp143I GATC 3 cut(s) 256, 429, 550
Bsp19I CCATGG 2 cut(s) 340, 667
BspACI CCGC 3 cut(s) 103, 242, 509
BspCNI CTCAG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 439, 749
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 340, 667
BssMI GATC 3 cut(s) 256, 429, 550
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 340, 667
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 249, 385, 460
BstC8I GCNNGC 2 cut(s) 292, 513
BstDEI CTNAG 2 cut(s) 496, 773
BstDSI CCRYGG 2 cut(s) 340, 667
BstF5I GGATG 4 cut(s) 205, 226, 316, 336
BstKTI GATC 3 cut(s) 259, 432, 553
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 256, 429, 550
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 245, 573
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 2 cut(s) 256, 429
BstYI RGATCY 2 cut(s) 256, 429
BtgI CCRYGG 2 cut(s) 340, 667
BtsCI GGATG 4 cut(s) 205, 226, 316, 336
Cac8I GCNNGC 2 cut(s) 292, 513
CaiI CAGNNNCTG 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 748
CviAII CATG 3 cut(s) 205, 341, 668
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 2 cut(s) 496, 773
DpnI GATC 3 cut(s) 258, 431, 552
DpnII GATC 3 cut(s) 256, 429, 550
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 340, 667
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 566, 676
EcoT14I CCWWGG 2 cut(s) 340, 667
ErhI CCWWGG 2 cut(s) 340, 667
FaeI CATG 3 cut(s) 208, 344, 671
FaqI GGGAC 3 cut(s) 368, 383, 423
FatI CATG 3 cut(s) 204, 340, 667
Fnu4HI GCNGC 3 cut(s) 12, 509, 516
FokI GGATG 4 cut(s) 212, 233, 323, 323
Fsp4HI GCNGC 3 cut(s) 12, 509, 516
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 12, 509, 516
Hin1II CATG 3 cut(s) 208, 344, 671
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 71, 238, 407
HphI GGTGA 2 cut(s) 359, 812
Hpy166II GTNNAC 3 cut(s) 463, 528, 814
Hpy188I TCNGA 1 cut(s) 836
Hpy188III TCNNGA 1 cut(s) 498
Hpy8I GTNNAC 3 cut(s) 463, 528, 814
HpyAV CCTTC 3 cut(s) 325, 541, 700
HpyCH4III ACNGT 3 cut(s) 249, 385, 460
HpyCH4V TGCA 5 cut(s) 14, 421, 518, 575, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 496, 773
Hsp92II CATG 3 cut(s) 208, 344, 671
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 256, 429, 550
LmnI GCTCC 2 cut(s) 40, 382
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 3 cut(s) 190, 408, 724
MaeI CTAG 1 cut(s) 6
MalI GATC 3 cut(s) 258, 431, 552
MboI GATC 3 cut(s) 256, 429, 550
MboII GAAGA 2 cut(s) 247, 485
MflI RGATCY 2 cut(s) 256, 429
MluCI AATT 5 cut(s) 108, 191, 215, 274, 674
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 288
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 2 cut(s) 340, 667
NdeII GATC 3 cut(s) 256, 429, 550
NlaIII CATG 3 cut(s) 208, 344, 671
NlaIV GGNNCC 2 cut(s) 439, 749
PfeI GAWTC 2 cut(s) 71, 238
PkrI GCNGC 3 cut(s) 13, 510, 517
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PsiI TTATAA 2 cut(s) 167, 279
PspN4I GGNNCC 2 cut(s) 439, 749
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 577
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 2 cut(s) 256, 429
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 12, 509, 516
Sau3AI GATC 3 cut(s) 256, 429, 550
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 401
SfaNI GCATC 3 cut(s) 190, 408, 724
SfcI CTRYAG 2 cut(s) 245, 573
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 5 cut(s) 108, 191, 215, 274, 674
SsiI CCGC 3 cut(s) 103, 242, 509
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 340, 667
TaaI ACNGT 3 cut(s) 249, 385, 460
TaqI TCGA 2 cut(s) 393, 718
TasI AATT 5 cut(s) 108, 191, 215, 274, 674
TauI GCSGC 1 cut(s) 511
TfiI GAWTC 2 cut(s) 71, 238
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 11, 515
TspDTI ATGAA 2 cut(s) 221, 596
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 674
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.