MD16G1046600.v1.1

Lysine histidine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
3233576 .. 3237840
4265 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1046600.v1.1.491

Sequence Viewer

Length: 1314 bp
ATGGTTACAACTTCTCCTCCAAAGGAAGTTGTTTCAGACGACAAATGGAAGGAGGAGCCGGTGGACAACGCCCGCCGAGCAAAATGGTGGTACTCCACCTTTCACACAGTCACCGCCATGATCGGTGCCGGTGTACTCAGCCTGCCTTATGCCATGGCCTACTTAGGATGGGGTCCAGGGACAATGGTGCTGGTAATATCATGGTGCATGACCTTGAACACAATGTGGCAGATGATTCAGCTCCATGAATGTGTTCCGGGAACTCGGTTTGACCGATACATCGACCTTGGCCGACACGCCTTCGGACCAAAGTTCGGGCCATGGATTGTGCTTCCGCAACAAATGATTGTGCAGGTTGGTTGTGACATAGTGTACATGGTCACCGGAGGAAAGTGTCTAAAGAAGTTTGTGGAGATGGTATGTGCCAATTGCACACCGGTCAAGCAATCGTACTGGATTGTCATCTTTGGTTCCCTTCATTTCTTTCTTTCCCAGCTCCCCAATTTCAACTCTGTTGCTGGTGTTTCTCTAGCAGCAGCTATCATGTCACTAAGTTATTCAACTATAGCGTGGGCAGGTTGCTTAAGCAAAGGTCAGGTTGAAAACGTGAGCTATGCATACAAGAAAACAAGCCCTGCAGATTACATGTTTAGGGTTTTCAATGCATTAGGTCAAATCTCGTTTGCATTTGCCGGGCATGCAGTGGTGCTTGAAATCCAAGCCACAATTTCATCGACGCCCGAGAAGCCATCGAGAATTCCCATGTGGAAAGGTGCTCTAGGAGCCTACTTTATCAATGCAATTTGCTATTTCCCGGTGGCTCTCATCGGGTACTGGGCTTTCGGTCAAGATGTCGATGATAACGTGCTCATAGATCTTAAAAAACCTGCATGGCTCATTGCTGCTGCTAACCTAATGGTTGTCGTCCATGTCATTGGCAGCTACCAGGTTTATGCTATGCCTGTTTTTGACATGCTTGAGAGGATGATGGTGAAAAAGGTGAACTTCCCACCTGGAATTGCACTTAGACTGATCACGAGATCAGCTTATGTTGCATTTACATTATTTGTTGGAGTCACCTTCCCTTTCTTTGGAGACCTTCTTGGTTTCTTTGGTGGATTTGGTTTTGCCCCCACTTCATACTTTCTTCCTTGTATAATGTGGCTGAGAATTAAGAAACCAAAGAGATACAGCATTCCATGGCTCGTCAACTGGGTTTGCATATTCATCGGAGTGTTCATCATGTTGGCTTCCACAGTTGGAGGTTTTCGTAATATCATTGCTGATGCATCAACATATCGTTTTTACACGTAA

Protein Analysis

438

Amino Acids

48.94

Weight (kDa)

9.15

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 26 - 421 1.8e-102 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 28 - 158 2.4e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 343, 566, 895
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 3 cut(s) 73, 114, 335
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 737
AdeI CACNNNGTG 1 cut(s) 225
AfaI GTAC 5 cut(s) 92, 135, 374, 452, 833
AfiI CCNNNNNNNGG 2 cut(s) 314, 1091
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 2 cut(s) 645, 1308
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 6 cut(s) 217, 508, 561, 602, 661, 713
AjnI CCWGG 3 cut(s) 175, 945, 1012
AluBI AGCT 6 cut(s) 241, 496, 539, 612, 942, 1046
AluI AGCT 6 cut(s) 241, 496, 539, 612, 942, 1046
Alw21I GWGCWC 2 cut(s) 778, 870
Alw26I GTCTC 1 cut(s) 1089
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 3 cut(s) 156, 289, 317
ApeKI GCWGC 5 cut(s) 533, 536, 902, 905, 939
ApoI RAATTY 1 cut(s) 756
AsiGI ACCGGT 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 173, 305, 317
AsuC2I CCSGG 3 cut(s) 258, 694, 815
AsuHPI GGTGA 5 cut(s) 103, 373, 1003, 1012, 1069
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 2 cut(s) 173, 305
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 1036
Bbv12I GWGCWC 2 cut(s) 778, 870
BbvI GCAGC 5 cut(s) 545, 548, 889, 892, 951
BccI CCATC 4 cut(s) 162, 409, 757, 982
BcgI CGANNNNNNTGC 2 cut(s) 1210, 1244
BciT130I CCWGG 3 cut(s) 177, 947, 1014
BclI TGATCA 1 cut(s) 1032
BcnI CCSGG 3 cut(s) 258, 694, 815
BcoDI GTCTC 1 cut(s) 1089
BfaI CTAG 2 cut(s) 530, 779
BfmI CTRYAG 2 cut(s) 564, 636
BfrI CTTAAG 1 cut(s) 583
BfuAI ACCTGC 3 cut(s) 343, 566, 895
BglII AGATCT 1 cut(s) 874
BisI GCNGC 5 cut(s) 534, 537, 903, 906, 940
BlsI GCNGC 5 cut(s) 535, 538, 904, 907, 941
Bme1390I CCNGG 6 cut(s) 177, 258, 694, 815, 947, 1014
Bme18I GGWCC 2 cut(s) 173, 305
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 3 cut(s) 173, 305, 317
BmiI GGNNCC 5 cut(s) 57, 127, 174, 472, 784
BmrFI CCNGG 6 cut(s) 177, 258, 694, 815, 947, 1014
BmrI ACTGGG 2 cut(s) 844, 1222
BmsI GCATC 2 cut(s) 1276, 1298
BmuI ACTGGG 2 cut(s) 844, 1222
BpuEI CTTGAG 1 cut(s) 998
BpuMI CCSGG 3 cut(s) 258, 694, 815
BsaAI YACGTR 1 cut(s) 1311
BsaBI GATNNNNATC 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 737
BsaI GGTCTC 1 cut(s) 1089
BsaJI CCNNGG 5 cut(s) 153, 176, 286, 320, 1199
BsaWI WCCGGW 2 cut(s) 383, 436
BsaXI ACNNNNNCTCC 2 cut(s) 28, 31
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 1091
Bse118I RCCGGY 3 cut(s) 58, 128, 436
Bse1I ACTGG 3 cut(s) 458, 839, 1217
Bse3DI GCAATG 2 cut(s) 897, 1278
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 3 cut(s) 177, 947, 1014
BseDI CCNNGG 5 cut(s) 153, 176, 286, 320, 1199
BseGI GGATG 2 cut(s) 173, 990
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 2 cut(s) 314, 1091
BseMI GCAATG 2 cut(s) 897, 1278
BseMII CTCAG 2 cut(s) 151, 1157
BseNI ACTGG 3 cut(s) 458, 839, 1217
BseRI GAGGAG 2 cut(s) 6, 68
BseXI GCAGC 5 cut(s) 545, 548, 889, 892, 951
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 3 cut(s) 158, 291, 319
BshNI GGYRCC 1 cut(s) 125
BshTI ACCGGT 1 cut(s) 436
BsiHKAI GWGCWC 2 cut(s) 778, 870
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 7 cut(s) 59, 129, 257, 384, 437, 693, 815
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 314, 1091
BsmAI GTCTC 1 cut(s) 1089
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 1194
BsnI GGCC 3 cut(s) 158, 291, 319
Bso31I GGTCTC 1 cut(s) 1089
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 2 cut(s) 778, 870
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 4 cut(s) 120, 874, 1032, 1040
Bsp19I CCATGG 3 cut(s) 153, 320, 1199
BspACI CCGC 3 cut(s) 73, 114, 335
BspANI GGCC 3 cut(s) 158, 291, 319
BspCNI CTCAG 2 cut(s) 150, 1158
BspLI GGNNCC 5 cut(s) 57, 127, 174, 472, 784
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 3 cut(s) 343, 566, 895
BspT107I GGYRCC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 1089
BsrDI GCAATG 2 cut(s) 897, 1278
BsrFI RCCGGY 3 cut(s) 58, 128, 436
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 3 cut(s) 458, 839, 1217
BssAI RCCGGY 3 cut(s) 58, 128, 436
BssECI CCNNGG 5 cut(s) 153, 176, 286, 320, 1199
BssMI GATC 4 cut(s) 120, 874, 1032, 1040
BssNI GRCGYC 1 cut(s) 737
BssSI CACGAG 1 cut(s) 1036
BssT1I CCWWGG 4 cut(s) 153, 286, 320, 1199
Bst2BI CACGAG 1 cut(s) 1036
Bst2UI CCWGG 3 cut(s) 177, 947, 1014
Bst4CI ACNGT 2 cut(s) 109, 1258
BstACI GRCGYC 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 1311
BstC8I GCNNGC 3 cut(s) 73, 143, 699
BstDEI CTNAG 5 cut(s) 137, 163, 551, 1025, 1166
BstDSI CCRYGG 3 cut(s) 153, 320, 1199
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 2 cut(s) 173, 990
BstKTI GATC 4 cut(s) 123, 877, 1035, 1043
BstMAI GTCTC 1 cut(s) 1089
BstMBI GATC 4 cut(s) 120, 874, 1032, 1040
BstMWI GCNNNNNNNGC 5 cut(s) 77, 698, 745, 782, 1052
BstNI CCWGG 3 cut(s) 177, 947, 1014
BstNSI RCATGY 3 cut(s) 649, 701, 976
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 6 cut(s) 175, 256, 692, 813, 945, 1012
BstSFI CTRYAG 2 cut(s) 564, 636
BstV1I GCAGC 5 cut(s) 545, 548, 889, 892, 951
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 3 cut(s) 158, 291, 319
BtgI CCRYGG 3 cut(s) 153, 320, 1199
BtsCI GGATG 2 cut(s) 173, 990
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 1 cut(s) 708
BveI ACCTGC 3 cut(s) 343, 566, 895
Cac8I GCNNGC 3 cut(s) 73, 143, 699
Cfr10I RCCGGY 3 cut(s) 58, 128, 436
Cfr13I GGNCC 3 cut(s) 173, 305, 317
CseI GACGC 1 cut(s) 745
CsiI ACCWGGT 1 cut(s) 945
Csp6I GTAC 5 cut(s) 91, 134, 373, 451, 832
CspAI ACCGGT 1 cut(s) 436
CviQI GTAC 5 cut(s) 91, 134, 373, 451, 832
DdeI CTNAG 5 cut(s) 137, 163, 551, 1025, 1166
DpnI GATC 4 cut(s) 122, 876, 1034, 1042
DpnII GATC 4 cut(s) 120, 874, 1032, 1040
DraIII CACNNNGTG 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 289
Eco130I CCWWGG 4 cut(s) 153, 286, 320, 1199
Eco31I GGTCTC 1 cut(s) 1089
Eco47I GGWCC 2 cut(s) 173, 305
Eco88I CYCGRG 1 cut(s) 740
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 3 cut(s) 175, 945, 1012
EcoT14I CCWWGG 4 cut(s) 153, 286, 320, 1199
EcoT22I ATGCAT 3 cut(s) 619, 667, 1291
ErhI CCWWGG 4 cut(s) 153, 286, 320, 1199
FalI AAGNNNNNCTT 2 cut(s) 989, 1021
FaqI GGGAC 1 cut(s) 193
FauI CCCGC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 1032
Fnu4HI GCNGC 5 cut(s) 534, 537, 903, 906, 940
FokI GGATG 2 cut(s) 180, 997
Fsp4HI GCNGC 5 cut(s) 534, 537, 903, 906, 940
FspBI CTAG 2 cut(s) 530, 779
GluI GCNGC 5 cut(s) 534, 537, 903, 906, 940
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 3 cut(s) 158, 291, 319
HapII CCGG 7 cut(s) 59, 129, 257, 384, 437, 693, 815
HgaI GACGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 737
HincII GTYRAC 1 cut(s) 1210
HindII GTYRAC 1 cut(s) 1210
HinfI GANTC 2 cut(s) 235, 1074
HpaII CCGG 7 cut(s) 59, 129, 257, 384, 437, 693, 815
HphI GGTGA 5 cut(s) 103, 373, 1003, 1012, 1069
Hpy166II GTNNAC 5 cut(s) 64, 134, 373, 1003, 1210
Hpy188I TCNGA 3 cut(s) 37, 305, 1232
Hpy188III TCNNGA 3 cut(s) 753, 848, 1036
Hpy8I GTNNAC 5 cut(s) 64, 134, 373, 1003, 1210
Hpy99I CGWCG 1 cut(s) 739
HpyAV CCTTC 5 cut(s) 43, 310, 485, 1090, 1109
HpyCH4III ACNGT 2 cut(s) 109, 1258
HpyCH4IV ACGT 3 cut(s) 606, 864, 1310
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 698, 745, 782, 1052
HpyF3I CTNAG 5 cut(s) 137, 163, 551, 1025, 1166
HpySE526I ACGT 3 cut(s) 606, 864, 1310
Hsp92I GRCGYC 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 1032
Kzo9I GATC 4 cut(s) 120, 874, 1032, 1040
LmnI GCTCC 4 cut(s) 55, 246, 501, 782
Lsp1109I GCAGC 5 cut(s) 545, 548, 889, 892, 951
LweI GCATC 2 cut(s) 1276, 1298
MabI ACCWGGT 1 cut(s) 945
MaeI CTAG 2 cut(s) 530, 779
MaeII ACGT 3 cut(s) 606, 864, 1310
MaeIII GTNAC 6 cut(s) 4, 109, 362, 379, 546, 1075
MalI GATC 4 cut(s) 122, 876, 1034, 1042
MboI GATC 4 cut(s) 120, 874, 1032, 1040
MboII GAAGA 1 cut(s) 1139
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 2 cut(s) 778, 870
MluCI AATT 7 cut(s) 427, 502, 726, 756, 801, 1017, 1170
MlyI GAGTC 1 cut(s) 1083
MmeI TCCRAC 2 cut(s) 1051, 1240
MnlI CCTC 5 cut(s) 27, 46, 380, 975, 1256
Mph1103I ATGCAT 3 cut(s) 619, 667, 1291
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 3 cut(s) 584, 879, 1173
MslI CAYNNNNRTG 3 cut(s) 116, 249, 1232
MspCI CTTAAG 1 cut(s) 583
MspI CCGG 7 cut(s) 59, 129, 257, 384, 437, 693, 815
MspR9I CCNGG 6 cut(s) 177, 258, 694, 815, 947, 1014
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 1194
MvaI CCWGG 3 cut(s) 177, 947, 1014
MwoI GCNNNNNNNGC 5 cut(s) 77, 698, 745, 782, 1052
NciI CCSGG 3 cut(s) 258, 694, 815
NcoI CCATGG 3 cut(s) 153, 320, 1199
NdeII GATC 4 cut(s) 120, 874, 1032, 1040
NlaIV GGNNCC 5 cut(s) 57, 127, 174, 472, 784
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 5 cut(s) 109, 362, 379, 546, 1075
NsiI ATGCAT 3 cut(s) 619, 667, 1291
NspI RCATGY 3 cut(s) 649, 701, 976
PaeI GCATGC 1 cut(s) 701
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 861
PctI GAATGC 1 cut(s) 1194
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 5 cut(s) 535, 538, 904, 907, 941
PleI GAGTC 1 cut(s) 1082
PpsI GAGTC 1 cut(s) 1082
Ppu21I YACGTR 1 cut(s) 1311
PscI ACATGT 1 cut(s) 645
Psp6I CCWGG 3 cut(s) 175, 945, 1012
PspEI GGTNACC 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 3 cut(s) 175, 945, 1012
PspN4I GGNNCC 5 cut(s) 57, 127, 174, 472, 784
PspPI GGNCC 3 cut(s) 173, 305, 317
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 5 cut(s) 92, 135, 374, 452, 833
RsaNI GTAC 5 cut(s) 91, 134, 373, 451, 832
RseI CAYNNNNRTG 3 cut(s) 116, 249, 1232
SaqAI TTAA 3 cut(s) 584, 879, 1173
SatI GCNGC 5 cut(s) 534, 537, 903, 906, 940
Sau3AI GATC 4 cut(s) 120, 874, 1032, 1040
Sau96I GGNCC 3 cut(s) 173, 305, 317
SchI GAGTC 1 cut(s) 1083
ScrFI CCNGG 6 cut(s) 177, 258, 694, 815, 947, 1014
SduI GDGCHC 2 cut(s) 778, 870
SexAI ACCWGGT 1 cut(s) 945
SfaNI GCATC 2 cut(s) 1276, 1298
SfcI CTRYAG 2 cut(s) 564, 636
SinI GGWCC 2 cut(s) 173, 305
SmiMI CAYNNNNRTG 3 cut(s) 116, 249, 1232
SmlI CTYRAG 2 cut(s) 583, 977
SmoI CTYRAG 2 cut(s) 583, 977
SphI GCATGC 1 cut(s) 701
Sse9I AATT 7 cut(s) 427, 502, 726, 756, 801, 1017, 1170
SsiI CCGC 3 cut(s) 73, 114, 335
SspMI CTAG 2 cut(s) 530, 779
StyD4I CCNGG 6 cut(s) 175, 256, 692, 813, 945, 1012
StyI CCWWGG 4 cut(s) 153, 286, 320, 1199
TaaI ACNGT 2 cut(s) 109, 1258
TaiI ACGT 3 cut(s) 609, 867, 1313
TaqI TCGA 4 cut(s) 282, 734, 752, 855
TaqII GACCGA 2 cut(s) 288, 833
TasI AATT 7 cut(s) 427, 502, 726, 756, 801, 1017, 1170
TatI WGTACW 2 cut(s) 133, 372
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 3 cut(s) 584, 879, 1173
Tru9I TTAA 3 cut(s) 584, 879, 1173
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 5 cut(s) 109, 362, 379, 546, 1075
TseI GCWGC 5 cut(s) 533, 536, 902, 905, 939
Tsp45I GTSAC 5 cut(s) 109, 362, 379, 546, 1075
TspDTI ATGAA 6 cut(s) 261, 467, 720, 1128, 1216, 1228
TspRI CASTG 1 cut(s) 708
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 173, 305
XapI RAATTY 1 cut(s) 756
XceI RCATGY 3 cut(s) 649, 701, 976
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 530, 779
Zsp2I ATGCAT 3 cut(s) 619, 667, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.