Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011639

Physical Location & Seq

Genomic Coordinates Reverse (-)

65124328 .. 65126676

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTTACAACTTCTCCTCCTCCAAAGGAAGCTCTTTCAGATAACAAATGGAAGGAGGAGGCAGACACCACGCGCCGAGCCAAATGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATAGGCGCCGGTGTCCTCAGCCTACCATATGCCATGGCCTACTTAGGATGGGGTCCAGGGACAATGGTACTGGCAGTCTCTTGGTGCATGACCTTGAACACAATGTGGCAGATGATACAACTCCATGAATGTGTTCCAGGGGTTCGCTTCGACCGATACATAGACCTTGGTCGACACGCCTTCGGTCCTAAACTCGGGCCATGGATCGTGCTTCCACAGCAGTTAATTGTCCAAGTTGGGTGTGACATAGTGTACATGGTCACTGGGGGAAAGTGTCTGAAGCAGTTTTTGGAAATGGCATGTTCCAGTTGCACACCAGTCAAGCAATCCTACTGGATTTTGATCTTTGGTTCCATTCATTTCGTCCTCTCCCAGCTTCCCAATTTCAACTCTGTCGCTGGTGTTTCACTAGCAGCAGCTATCATGTCACTAAGTTATTCAACAATAGCTTGGGCTGGTTGCTTAAGTAGAGGCCAGGTCGACAATGTTAGCTATGCATACAAGAAAACTAGCCCAGCTGATTACATGTTCCGGGTGTTCAATTCCCTTGGTCAAATCTCGTTTGCATTTGCTGGACATGCTGTGGCTCTTGAAATTCAGGCCACAATTCCTTCGACTCCAGAGAGGCCTTCAAGAATACCGATGTGGAAAGGTGCCGTCGGAGCCTATTTTATCAATGCAATTTGCTATTTCCCGGTGGCCCTCATCGGCTACTGGGCTTTTGGGCAAGATGTTGATGATAATGTTCTAGTAGGTCTCAAGAGACCTGCTTGGCTCATTGCATCTGCAAATTTAATGGTTGTTGTCCATGTTTCCATTTTCATTGGAGTGTTCATTATGTTGGCCTCCACAGTTGGTGGTTTGAGGAACATCATCACTGATGCATCCACATATCGTTTCTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

342

Amino Acids

37.77

Weight (kDa)

8.84

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	26 - 320	6.3e-70	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	28 - 159	2.1e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25530
fragaria_vesca	FvH4_4g27830 FvH4_4g27960 FvH4_4g27960 FvH4_4g27960 FvH4_4g27960
malus_domestica	MD13G1045300.v1.1 MD16G1046600.v1.1 MD16G1047100.v1.1
prunus_persica	Prupe.1G306700_v2.0.a1 Prupe.1G306700_v2.0.a1
pyrus_communis	pycom13g03990 pycom16g04100
rosa_chinensis	RchiOBHm_Chr4g0435661
rosa_laevigata	RLG00000006569
rosa_multiflora	Rmu_sc0000051.1_g000010
rosa_rugosa	Rorug04G0287800
rosa_samantha	Rh4AG342900
rosa_wichuraiana	Rw4G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	895
AccB1I	GGYRCC	2 cut(s)	125, 773
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	292, 600
AccII	CGCG	1 cut(s)	73
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	714, 910
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	92, 189, 374
AfiI	CCNNNNNNNGG	2 cut(s)	87, 314
AflII	CTTAAG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	6 cut(s)	217, 508, 561, 661, 713, 753
AjnI	CCWGG	3 cut(s)	175, 256, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	6 cut(s)	32, 496, 539, 569, 612, 638
AluI	AGCT	6 cut(s)	32, 496, 539, 569, 612, 638
Alw26I	GTCTC	3 cut(s)	202, 877, 881
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	7 cut(s)	156, 317, 592, 720, 746, 819, 963
ApeKI	GCWGC	2 cut(s)	533, 536
ApoI	RAATTY	2 cut(s)	714, 910
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	75, 128
AspS9I	GGNCC	4 cut(s)	173, 305, 317, 820
AsuC2I	CCSGG	2 cut(s)	653, 815
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	173, 305
BanI	GGYRCC	2 cut(s)	125, 773
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	545, 548
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	761
BciT130I	CCWGG	3 cut(s)	177, 258, 596
BcnI	CCSGG	2 cut(s)	653, 815
BcoDI	GTCTC	3 cut(s)	202, 877, 881
BfaI	CTAG	3 cut(s)	530, 630, 869
BfoI	RGCGCY	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	583
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	2 cut(s)	534, 537
BlsI	GCNGC	2 cut(s)	535, 538
Bme1390I	CCNGG	5 cut(s)	177, 258, 596, 653, 815
Bme18I	GGWCC	2 cut(s)	173, 305
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	4 cut(s)	173, 305, 317, 820
BmiI	GGNNCC	5 cut(s)	127, 174, 472, 775, 784
BmrFI	CCNGG	5 cut(s)	177, 258, 596, 653, 815
BmrI	ACTGGG	2 cut(s)	393, 844
BmsI	GCATC	3 cut(s)	911, 991, 1013
BmuI	ACTGGG	2 cut(s)	393, 844
BoxI	GACNNNNGTC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	2 cut(s)	653, 815
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	2 cut(s)	877, 881
BsaJI	CCNNGG	6 cut(s)	153, 176, 257, 286, 320, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 31
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 314
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	6 cut(s)	195, 388, 426, 437, 458, 839
Bse3DI	GCAATG	1 cut(s)	897
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	177, 258, 596
BseDI	CCNNGG	6 cut(s)	153, 176, 257, 286, 320, 667
BseGI	GGATG	2 cut(s)	173, 1004
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	2 cut(s)	87, 314
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	6 cut(s)	195, 388, 426, 437, 458, 839
BseRI	GAGGAG	3 cut(s)	6, 9, 71
BseXI	GCAGC	2 cut(s)	545, 548
BseYI	CCCAGC	2 cut(s)	492, 634
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	7 cut(s)	158, 319, 594, 722, 748, 821, 965
BshNI	GGYRCC	2 cut(s)	125, 773
BsiEI	CGRYCG	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	129, 652, 815
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	87, 314
BsmAI	GTCTC	3 cut(s)	202, 877, 881
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	7 cut(s)	158, 319, 594, 722, 748, 821, 965
Bso31I	GGTCTC	2 cut(s)	877, 881
BsoBI	CYCGRG	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	324, 462
Bsp19I	CCATGG	2 cut(s)	153, 320
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	7 cut(s)	158, 319, 594, 722, 748, 821, 965
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	5 cut(s)	127, 174, 472, 775, 784
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	2 cut(s)	125, 773
BspTI	CTTAAG	1 cut(s)	583
BspTNI	GGTCTC	2 cut(s)	877, 881
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	6 cut(s)	195, 388, 426, 437, 458, 839
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	6 cut(s)	153, 176, 257, 286, 320, 667
BssMI	GATC	2 cut(s)	324, 462
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	4 cut(s)	153, 286, 320, 667
Bst2UI	CCWGG	3 cut(s)	177, 258, 596
Bst4CI	ACNGT	2 cut(s)	109, 973
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	137, 163, 551
BstDSI	CCRYGG	2 cut(s)	153, 320
BstF5I	GGATG	2 cut(s)	173, 1004
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	75, 128
BstKTI	GATC	2 cut(s)	327, 465
BstMAI	GTCTC	3 cut(s)	202, 877, 881
BstMBI	GATC	2 cut(s)	324, 462
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 698, 782
BstNI	CCWGG	3 cut(s)	177, 258, 596
BstNSI	RCATGY	3 cut(s)	423, 649, 701
BstPAI	GACNNNNGTC	1 cut(s)	288
BstSCI	CCNGG	5 cut(s)	175, 256, 594, 651, 813
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	545, 548
BsuRI	GGCC	7 cut(s)	158, 319, 594, 722, 748, 821, 965
BtgI	CCRYGG	2 cut(s)	153, 320
BtsCI	GGATG	2 cut(s)	173, 1004
BtsIMutI	CAGTG	2 cut(s)	381, 996
BveI	ACCTGC	1 cut(s)	895
CfoI	GCGC	2 cut(s)	75, 128
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	4 cut(s)	173, 305, 317, 820
Csp6I	GTAC	3 cut(s)	91, 188, 373
CviQI	GTAC	3 cut(s)	91, 188, 373
DdeI	CTNAG	3 cut(s)	137, 163, 551
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	2 cut(s)	326, 464
DpnII	GATC	2 cut(s)	324, 462
DraIII	CACNNNGTG	1 cut(s)	225
Eco130I	CCWWGG	4 cut(s)	153, 286, 320, 667
Eco147I	AGGCCT	1 cut(s)	748
Eco31I	GGTCTC	2 cut(s)	877, 881
Eco47I	GGWCC	2 cut(s)	173, 305
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	175, 256, 594
EcoT14I	CCWWGG	4 cut(s)	153, 286, 320, 667
EcoT22I	ATGCAT	2 cut(s)	619, 1006
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	4 cut(s)	153, 286, 320, 667
FaqI	GGGAC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	148
FblI	GTMKAC	2 cut(s)	292, 600
Fnu4HI	GCNGC	2 cut(s)	534, 537
FokI	GGATG	2 cut(s)	180, 991
Fsp4HI	GCNGC	2 cut(s)	534, 537
FspBI	CTAG	3 cut(s)	530, 630, 869
GlaI	GCGC	2 cut(s)	74, 127
GluI	GCNGC	2 cut(s)	534, 537
GsaI	CCCAGC	2 cut(s)	496, 638
GsuI	CTGGAG	1 cut(s)	723
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	7 cut(s)	158, 319, 594, 722, 748, 821, 965
HapII	CCGG	3 cut(s)	129, 652, 815
HhaI	GCGC	2 cut(s)	75, 128
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	2 cut(s)	73, 126
HinP1I	GCGC	2 cut(s)	73, 126
HincII	GTYRAC	2 cut(s)	293, 601
HindII	GTYRAC	2 cut(s)	293, 601
HinfI	GANTC	1 cut(s)	736
HpaII	CCGG	3 cut(s)	129, 652, 815
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	293, 373, 601
Hpy188I	TCNGA	3 cut(s)	40, 399, 782
Hpy188III	TCNNGA	4 cut(s)	710, 740, 753, 880
Hpy8I	GTNNAC	3 cut(s)	293, 373, 601
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	5 cut(s)	46, 109, 310, 741, 759
HpyCH4III	ACNGT	2 cut(s)	109, 973
HpyCH4V	TGCA	8 cut(s)	207, 432, 617, 686, 800, 902, 908, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 698, 782
HpyF3I	CTNAG	3 cut(s)	137, 163, 551
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	2 cut(s)	73, 126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	324, 462
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	2 cut(s)	545, 548
LweI	GCATC	3 cut(s)	911, 991, 1013
MaeI	CTAG	3 cut(s)	530, 630, 869
MaeIII	GTNAC	5 cut(s)	4, 109, 362, 379, 546
MalI	GATC	2 cut(s)	326, 464
MboI	GATC	2 cut(s)	324, 462
MluCI	AATT	7 cut(s)	345, 502, 661, 714, 726, 801, 910
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	1 cut(s)	760
Mph1103I	ATGCAT	2 cut(s)	619, 1006
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	344, 584, 914, 1027
MslI	CAYNNNNRTG	3 cut(s)	116, 249, 947
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	583
MspI	CCGG	3 cut(s)	129, 652, 815
MspR9I	CCNGG	5 cut(s)	177, 258, 596, 653, 815
MvaI	CCWGG	3 cut(s)	177, 258, 596
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	337, 698, 782
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	653, 815
NcoI	CCATGG	2 cut(s)	153, 320
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	2 cut(s)	324, 462
NlaIV	GGNNCC	5 cut(s)	127, 174, 472, 775, 784
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	4 cut(s)	109, 362, 379, 546
NsiI	ATGCAT	2 cut(s)	619, 1006
NspI	RCATGY	3 cut(s)	423, 649, 701
PceI	AGGCCT	1 cut(s)	748
PciI	ACATGT	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	535, 538
PleI	GAGTC	1 cut(s)	730
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	730
PscI	ACATGT	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	175, 256, 594
PspFI	CCCAGC	2 cut(s)	492, 634
PspGI	CCWGG	3 cut(s)	175, 256, 594
PspN4I	GGNNCC	5 cut(s)	127, 174, 472, 775, 784
PspPI	GGNCC	4 cut(s)	173, 305, 317, 820
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	3 cut(s)	92, 189, 374
RsaNI	GTAC	3 cut(s)	91, 188, 373
RseI	CAYNNNNRTG	3 cut(s)	116, 249, 947
SalI	GTCGAC	2 cut(s)	291, 599
SaqAI	TTAA	4 cut(s)	344, 584, 914, 1027
SatI	GCNGC	2 cut(s)	534, 537
Sau3AI	GATC	2 cut(s)	324, 462
Sau96I	GGNCC	4 cut(s)	173, 305, 317, 820
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	5 cut(s)	177, 258, 596, 653, 815
SfaNI	GCATC	3 cut(s)	911, 991, 1013
SfoI	GGCGCC	1 cut(s)	127
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	173, 305
SmiMI	CAYNNNNRTG	3 cut(s)	116, 249, 947
SmlI	CTYRAG	2 cut(s)	583, 878
SmoI	CTYRAG	2 cut(s)	583, 878
Sse9I	AATT	7 cut(s)	345, 502, 661, 714, 726, 801, 910
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	1 cut(s)	114
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	3 cut(s)	530, 630, 869
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	5 cut(s)	175, 256, 594, 651, 813
StyI	CCWWGG	4 cut(s)	153, 286, 320, 667
TaaI	ACNGT	2 cut(s)	109, 973
TaqI	TCGA	4 cut(s)	270, 292, 600, 734
TaqII	GACCGA	2 cut(s)	288, 293
TasI	AATT	7 cut(s)	345, 502, 661, 714, 726, 801, 910
TatI	WGTACW	1 cut(s)	372
Tru1I	TTAA	4 cut(s)	344, 584, 914, 1027
Tru9I	TTAA	4 cut(s)	344, 584, 914, 1027
TscAI	CASTG	2 cut(s)	388, 1003
TseFI	GTSAC	4 cut(s)	109, 362, 379, 546
TseI	GCWGC	2 cut(s)	533, 536
Tsp45I	GTSAC	4 cut(s)	109, 362, 379, 546
TspDTI	ATGAA	4 cut(s)	261, 467, 931, 943
TspRI	CASTG	2 cut(s)	388, 1003
Van91I	CCANNNNNTGG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	173, 305
XapI	RAATTY	2 cut(s)	714, 910
XceI	RCATGY	3 cut(s)	423, 649, 701
XmiI	GTMKAC	2 cut(s)	292, 600
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	3 cut(s)	530, 630, 869
Zsp2I	ATGCAT	2 cut(s)	619, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.