MD16G1047100.v1.1

Lysine histidine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
3266698 .. 3269842
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1047100.v1.1.491

Sequence Viewer

Length: 1317 bp
ATGGTTACAACTTCTCCTCCTCCAAAGGAAGTTGTTTCAGACGACAAATGGAAGGAGGAGCCGGTGGACAACGCCCGCCGAGCAAAATGGTGGTACTCCACCTTTCACACAGTCACCGCCATGATCGGTGCCGGTGTACTCAGCCTGCCGTATGCCATGGCCTTCTTAGGATGGGGTCCAGGGACAATGGTGCTGGTAATATCATGGTGCATGACCTTGAACACAATGTGGCAGATGATTCAGCTCCATGAATGTGTTCCGGGAACTAGGTTTGACCGATACATCGACCTTGGCCGACACGCCTTCGGACCAAAGTTCGGGCCATGGATTGTGCTTCCGCAACAAATGATTGTGCAGGTTGGTTGTGACATAGTGTACATGGTCACCGGAGGAAAGTGTCTAAAGAAATTTGTGGAGATGGCATGTGCCAATTGCACACCAGTCAAGCAATCGTACTGGATTGTCATCTTTGGTTCCCTTCATTTCTTTCTTTCCCAGCTCCCCAATTTCAACTCTGTTGCTGGTGTTTCTCTAGCAGCAGCTATCATGTCACTAAGTTATTCAACTATAGCGTGGGCAGGTTGCTTAAGCAAAGGTCAGGTTGAAAACGTGAGCTATGCATACAAGAAAACAAGCCCTGCAGATTACATGTTTAGGGTTTTCAATGCATTAGGTCAAATCTCGTTTGCATTTGCTGGGCATGCAGTGGTGCTTGAAATCCAAGCCACAATTCCATCGACGCCTGAGAAGCCGTCGAGAATTCCCATGTGGAAAGGTGCTCTAGGAGCCTACTTTATCAACGCAATTTGCTATTTCCCGGTGGCCCTCATCGGGTACTGGGCTTTTGGTCAAGATGTCGATGATAACGTGCTCATAGATCTTAAAAAACCTACATGGCTCATTGCTGCTGCTAACCTAATGGTTGTCGTCCATGTCATTGGCAGCTACCAGGTTTATGCTATGCCTGTTTTTGACATGCTTGAGAGGATGATGGTGAAAAAGATGAACTTCCCACCTGGAATTGCACTTAGACTAATCACGAGATCAGCTTATGTTGCATTTACATTATTTGTTGGAGTCACCTTCCCTTTCTTTGGAGACCTTCTTGGTTTCTTTGGTGGATTTGGTTTTGCCCCCACTTCATACTTTCTTCCTTGTATAATGTGGCTGAGAATTAAGAAACCAAAGAGATACAGCATTCAATGGCTCGTCAACTGGGTTTGCATATTCATCGGAGTGTTCATCATGTTGGCTTCCACAGTTGGAGGTTTTCGTAATATCATTGCTGATGCATCAACATATCGTTTTTACACGTAA

Protein Analysis

439

Amino Acids

49.1

Weight (kDa)

9.16

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 27 - 422 1.5e-102 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 29 - 159 2.8e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011639)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 346, 569
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 3 cut(s) 76, 117, 338
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 2 cut(s) 407, 759
AcyI GRCGYC 1 cut(s) 740
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 5 cut(s) 95, 138, 377, 455, 836
AfiI CCNNNNNNNGG 3 cut(s) 317, 831, 1094
AflII CTTAAG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 648, 1311
AgsI TTSAA 7 cut(s) 220, 511, 564, 605, 664, 716, 1202
AjnI CCWGG 3 cut(s) 178, 948, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
AluBI AGCT 6 cut(s) 244, 499, 542, 615, 945, 1049
AluI AGCT 6 cut(s) 244, 499, 542, 615, 945, 1049
Alw21I GWGCWC 2 cut(s) 781, 873
Alw26I GTCTC 1 cut(s) 1092
AoxI GGCC 4 cut(s) 159, 292, 320, 822
ApeKI GCWGC 5 cut(s) 536, 539, 905, 908, 942
ApoI RAATTY 2 cut(s) 407, 759
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 4 cut(s) 176, 308, 320, 823
AsuC2I CCSGG 2 cut(s) 261, 818
AsuHPI GGTGA 4 cut(s) 106, 376, 1006, 1072
AvaII GGWCC 2 cut(s) 176, 308
BanI GGYRCC 1 cut(s) 128
BauI CACGAG 1 cut(s) 1039
Bbv12I GWGCWC 2 cut(s) 781, 873
BbvI GCAGC 5 cut(s) 548, 551, 892, 895, 954
BccI CCATC 4 cut(s) 165, 412, 742, 985
BceAI ACGGC 2 cut(s) 133, 736
BcgI CGANNNNNNTGC 2 cut(s) 1213, 1247
BciT130I CCWGG 3 cut(s) 180, 950, 1017
BcnI CCSGG 2 cut(s) 261, 818
BcoDI GTCTC 1 cut(s) 1092
BfaI CTAG 3 cut(s) 267, 533, 782
BfmI CTRYAG 2 cut(s) 567, 639
BfrI CTTAAG 1 cut(s) 586
BfuAI ACCTGC 2 cut(s) 346, 569
BglII AGATCT 1 cut(s) 877
BisI GCNGC 5 cut(s) 537, 540, 906, 909, 943
BlsI GCNGC 5 cut(s) 538, 541, 907, 910, 944
Bme1390I CCNGG 5 cut(s) 180, 261, 818, 950, 1017
Bme18I GGWCC 2 cut(s) 176, 308
BmgT120I GGNCC 4 cut(s) 176, 308, 320, 823
BmiI GGNNCC 5 cut(s) 60, 130, 177, 475, 787
BmrFI CCNGG 5 cut(s) 180, 261, 818, 950, 1017
BmrI ACTGGG 2 cut(s) 847, 1225
BmsI GCATC 2 cut(s) 1279, 1301
BmuI ACTGGG 2 cut(s) 847, 1225
BpuEI CTTGAG 1 cut(s) 1001
BpuMI CCSGG 2 cut(s) 261, 818
BsaAI YACGTR 1 cut(s) 1314
BsaBI GATNNNNATC 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 1092
BsaJI CCNNGG 4 cut(s) 156, 179, 289, 323
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 28, 31
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 831, 1094
Bse118I RCCGGY 2 cut(s) 61, 131
Bse1I ACTGG 4 cut(s) 440, 461, 842, 1220
Bse3DI GCAATG 2 cut(s) 900, 1281
Bse8I GATNNNNATC 1 cut(s) 464
BseBI CCWGG 3 cut(s) 180, 950, 1017
BseDI CCNNGG 4 cut(s) 156, 179, 289, 323
BseGI GGATG 2 cut(s) 176, 993
BseJI GATNNNNATC 1 cut(s) 464
BseLI CCNNNNNNNGG 3 cut(s) 317, 831, 1094
BseMI GCAATG 2 cut(s) 900, 1281
BseMII CTCAG 3 cut(s) 154, 735, 1160
BseNI ACTGG 4 cut(s) 440, 461, 842, 1220
BseRI GAGGAG 3 cut(s) 6, 9, 71
BseXI GCAGC 5 cut(s) 548, 551, 892, 895, 954
BseYI CCCAGC 2 cut(s) 495, 695
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 4 cut(s) 161, 294, 322, 824
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 781, 873
BsiSI CCGG 5 cut(s) 62, 132, 260, 387, 818
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 317, 831, 1094
BsmAI GTCTC 1 cut(s) 1092
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 4 cut(s) 161, 294, 322, 824
Bso31I GGTCTC 1 cut(s) 1092
Bsp1286I GDGCHC 2 cut(s) 781, 873
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 3 cut(s) 123, 877, 1043
Bsp19I CCATGG 2 cut(s) 156, 323
BspACI CCGC 3 cut(s) 76, 117, 338
BspANI GGCC 4 cut(s) 161, 294, 322, 824
BspCNI CTCAG 3 cut(s) 153, 736, 1161
BspLI GGNNCC 5 cut(s) 60, 130, 177, 475, 787
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 2 cut(s) 346, 569
BspT107I GGYRCC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 1092
BsrDI GCAATG 2 cut(s) 900, 1281
BsrFI RCCGGY 2 cut(s) 61, 131
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 4 cut(s) 440, 461, 842, 1220
BssAI RCCGGY 2 cut(s) 61, 131
BssECI CCNNGG 4 cut(s) 156, 179, 289, 323
BssMI GATC 3 cut(s) 123, 877, 1043
BssNI GRCGYC 1 cut(s) 740
BssSI CACGAG 1 cut(s) 1039
BssT1I CCWWGG 3 cut(s) 156, 289, 323
Bst2BI CACGAG 1 cut(s) 1039
Bst2UI CCWGG 3 cut(s) 180, 950, 1017
Bst4CI ACNGT 2 cut(s) 112, 1261
BstACI GRCGYC 1 cut(s) 740
BstAFI CTTAAG 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 1314
BstC8I GCNNGC 3 cut(s) 76, 146, 702
BstDEI CTNAG 6 cut(s) 140, 166, 554, 744, 1028, 1169
BstDSI CCRYGG 2 cut(s) 156, 323
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 2 cut(s) 176, 993
BstKTI GATC 3 cut(s) 126, 880, 1046
BstMAI GTCTC 1 cut(s) 1092
BstMBI GATC 3 cut(s) 123, 877, 1043
BstMWI GCNNNNNNNGC 5 cut(s) 80, 701, 748, 785, 1055
BstNI CCWGG 3 cut(s) 180, 950, 1017
BstNSI RCATGY 4 cut(s) 426, 652, 704, 979
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 5 cut(s) 178, 259, 816, 948, 1015
BstSFI CTRYAG 2 cut(s) 567, 639
BstV1I GCAGC 5 cut(s) 548, 551, 892, 895, 954
BstX2I RGATCY 1 cut(s) 877
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 1 cut(s) 877
BsuRI GGCC 4 cut(s) 161, 294, 322, 824
BtgI CCRYGG 2 cut(s) 156, 323
BtsCI GGATG 2 cut(s) 176, 993
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 1 cut(s) 711
BveI ACCTGC 2 cut(s) 346, 569
Cac8I GCNNGC 3 cut(s) 76, 146, 702
Cfr10I RCCGGY 2 cut(s) 61, 131
Cfr13I GGNCC 4 cut(s) 176, 308, 320, 823
CseI GACGC 1 cut(s) 748
CsiI ACCWGGT 1 cut(s) 948
Csp6I GTAC 5 cut(s) 94, 137, 376, 454, 835
CviQI GTAC 5 cut(s) 94, 137, 376, 454, 835
DdeI CTNAG 6 cut(s) 140, 166, 554, 744, 1028, 1169
DpnI GATC 3 cut(s) 125, 879, 1045
DpnII GATC 3 cut(s) 123, 877, 1043
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 156, 289, 323
Eco31I GGTCTC 1 cut(s) 1092
Eco47I GGWCC 2 cut(s) 176, 308
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 759
EcoRII CCWGG 3 cut(s) 178, 948, 1015
EcoT14I CCWWGG 3 cut(s) 156, 289, 323
EcoT22I ATGCAT 3 cut(s) 622, 670, 1294
ErhI CCWWGG 3 cut(s) 156, 289, 323
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 1 cut(s) 196
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 5 cut(s) 537, 540, 906, 909, 943
FokI GGATG 2 cut(s) 183, 1000
Fsp4HI GCNGC 5 cut(s) 537, 540, 906, 909, 943
FspBI CTAG 3 cut(s) 267, 533, 782
GluI GCNGC 5 cut(s) 537, 540, 906, 909, 943
GsaI CCCAGC 2 cut(s) 499, 699
HaeIII GGCC 4 cut(s) 161, 294, 322, 824
HapII CCGG 5 cut(s) 62, 132, 260, 387, 818
HgaI GACGC 1 cut(s) 748
Hin1I GRCGYC 1 cut(s) 740
HincII GTYRAC 1 cut(s) 1213
HindII GTYRAC 1 cut(s) 1213
HinfI GANTC 2 cut(s) 238, 1077
HpaII CCGG 5 cut(s) 62, 132, 260, 387, 818
HphI GGTGA 4 cut(s) 106, 376, 1006, 1072
Hpy166II GTNNAC 4 cut(s) 67, 137, 376, 1213
Hpy188I TCNGA 3 cut(s) 40, 308, 1235
Hpy188III TCNNGA 3 cut(s) 756, 851, 1039
Hpy8I GTNNAC 4 cut(s) 67, 137, 376, 1213
Hpy99I CGWCG 2 cut(s) 742, 757
HpyAV CCTTC 6 cut(s) 46, 172, 313, 488, 1093, 1112
HpyCH4III ACNGT 2 cut(s) 112, 1261
HpyCH4IV ACGT 3 cut(s) 609, 867, 1313
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 701, 748, 785, 1055
HpyF3I CTNAG 6 cut(s) 140, 166, 554, 744, 1028, 1169
HpySE526I ACGT 3 cut(s) 609, 867, 1313
Hsp92I GRCGYC 1 cut(s) 740
Kzo9I GATC 3 cut(s) 123, 877, 1043
LmnI GCTCC 4 cut(s) 58, 249, 504, 785
Lsp1109I GCAGC 5 cut(s) 548, 551, 892, 895, 954
LweI GCATC 2 cut(s) 1279, 1301
MabI ACCWGGT 1 cut(s) 948
MaeI CTAG 3 cut(s) 267, 533, 782
MaeII ACGT 3 cut(s) 609, 867, 1313
MaeIII GTNAC 6 cut(s) 4, 112, 365, 382, 549, 1078
MalI GATC 3 cut(s) 125, 879, 1045
MboI GATC 3 cut(s) 123, 877, 1043
MboII GAAGA 1 cut(s) 1142
MfeI CAATTG 1 cut(s) 430
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 781, 873
MluCI AATT 8 cut(s) 407, 430, 505, 729, 759, 804, 1020, 1173
MlyI GAGTC 1 cut(s) 1086
MmeI TCCRAC 2 cut(s) 1054, 1243
MnlI CCTC 7 cut(s) 27, 30, 49, 383, 836, 978, 1259
Mph1103I ATGCAT 3 cut(s) 622, 670, 1294
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 3 cut(s) 587, 882, 1176
MslI CAYNNNNRTG 3 cut(s) 119, 252, 1235
MspCI CTTAAG 1 cut(s) 586
MspI CCGG 5 cut(s) 62, 132, 260, 387, 818
MspR9I CCNGG 5 cut(s) 180, 261, 818, 950, 1017
MunI CAATTG 1 cut(s) 430
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 3 cut(s) 180, 950, 1017
MwoI GCNNNNNNNGC 5 cut(s) 80, 701, 748, 785, 1055
NciI CCSGG 2 cut(s) 261, 818
NcoI CCATGG 2 cut(s) 156, 323
NdeII GATC 3 cut(s) 123, 877, 1043
NlaIV GGNNCC 5 cut(s) 60, 130, 177, 475, 787
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 5 cut(s) 112, 365, 382, 549, 1078
NsiI ATGCAT 3 cut(s) 622, 670, 1294
NspI RCATGY 4 cut(s) 426, 652, 704, 979
PaeI GCATGC 1 cut(s) 704
PciI ACATGT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 1197
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 5 cut(s) 538, 541, 907, 910, 944
PleI GAGTC 1 cut(s) 1085
PpsI GAGTC 1 cut(s) 1085
Ppu21I YACGTR 1 cut(s) 1314
PscI ACATGT 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 178, 948, 1015
PspEI GGTNACC 1 cut(s) 382
PspFI CCCAGC 2 cut(s) 495, 695
PspGI CCWGG 3 cut(s) 178, 948, 1015
PspN4I GGNNCC 5 cut(s) 60, 130, 177, 475, 787
PspPI GGNCC 4 cut(s) 176, 308, 320, 823
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 877
RsaI GTAC 5 cut(s) 95, 138, 377, 455, 836
RsaNI GTAC 5 cut(s) 94, 137, 376, 454, 835
RseI CAYNNNNRTG 3 cut(s) 119, 252, 1235
SaqAI TTAA 3 cut(s) 587, 882, 1176
SatI GCNGC 5 cut(s) 537, 540, 906, 909, 943
Sau3AI GATC 3 cut(s) 123, 877, 1043
Sau96I GGNCC 4 cut(s) 176, 308, 320, 823
SchI GAGTC 1 cut(s) 1086
ScrFI CCNGG 5 cut(s) 180, 261, 818, 950, 1017
SduI GDGCHC 2 cut(s) 781, 873
SexAI ACCWGGT 1 cut(s) 948
SfaNI GCATC 2 cut(s) 1279, 1301
SfcI CTRYAG 2 cut(s) 567, 639
SinI GGWCC 2 cut(s) 176, 308
SmiMI CAYNNNNRTG 3 cut(s) 119, 252, 1235
SmlI CTYRAG 2 cut(s) 586, 980
SmoI CTYRAG 2 cut(s) 586, 980
SphI GCATGC 1 cut(s) 704
Sse9I AATT 8 cut(s) 407, 430, 505, 729, 759, 804, 1020, 1173
SsiI CCGC 3 cut(s) 76, 117, 338
SspMI CTAG 3 cut(s) 267, 533, 782
StyD4I CCNGG 5 cut(s) 178, 259, 816, 948, 1015
StyI CCWWGG 3 cut(s) 156, 289, 323
TaaI ACNGT 2 cut(s) 112, 1261
TaiI ACGT 3 cut(s) 612, 870, 1316
TaqI TCGA 4 cut(s) 285, 737, 755, 858
TaqII GACCGA 1 cut(s) 291
TasI AATT 8 cut(s) 407, 430, 505, 729, 759, 804, 1020, 1173
TatI WGTACW 2 cut(s) 136, 375
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 587, 882, 1176
Tru9I TTAA 3 cut(s) 587, 882, 1176
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 5 cut(s) 112, 365, 382, 549, 1078
TseI GCWGC 5 cut(s) 536, 539, 905, 908, 942
Tsp45I GTSAC 5 cut(s) 112, 365, 382, 549, 1078
TspDTI ATGAA 6 cut(s) 264, 470, 1019, 1131, 1219, 1231
TspRI CASTG 1 cut(s) 711
Vha464I CTTAAG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 176, 308
XapI RAATTY 2 cut(s) 407, 759
XceI RCATGY 4 cut(s) 426, 652, 704, 979
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 3 cut(s) 267, 533, 782
Zsp2I ATGCAT 3 cut(s) 622, 670, 1294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.